Contig 008708:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001O03Sequence544008708 (3)ref|XP_006353111.1|4e-47PREDICTED: acetolactate synthase small subunit 1, chloroplastic-like [Solanum t694014798ref|XP_004251994.1|7e-93PREDICTED: acetolactate synthase small subunit 1, chloroplastic [Solanum lycope
JMFS036E11Sequence618008708 (3)ref|XP_006353111.1|3e-47PREDICTED: acetolactate synthase small subunit 1, chloroplastic-like [Solanum t
JMSF030N08Sequence626008708 (3)ref|XP_006353111.1|1e-86PREDICTED: acetolactate synthase small subunit 1, chloroplastic-like [Solanum t122007547 (2)

Alignment

This contig is upended


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JMFS036E11+                  AGTAGCAGGCCTGTGTCTCTTTCCTAATCCTCAAGCTTAGGTAAAACAAACAG
                      ____________________________________________________________
consensus                    AGTAGCAGGCCTGTGTCTCTTTCCTAATCCTCAAGCTTAGGTAAAACAAACAG
 
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JMFS036E11+           ATATCCAAGATCAGTTTGGTCTTCGTCCATAATATCTCATGAAGCAGAATTTTATGATTC
                      ____________________________________________________________
consensus             ATATCCAAGATCAGTTTGGTCTTCGTCCATAATATCTCATGAAGCAGAATTTTATGATTC
 
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JMFS036E11+           ATGCATGCTGATAAGCGAGTTCGAACAAGCAGGGTATAAAATTGGCATGATAATAACCTT
JMSF030N08+                                                                 AACCTT
JMFF001O03+                                                                   CCTT
                      ____________________________________________________________
consensus             ATGCATGCTGATAAGCGAGTTCGAACAAGCAGGGTATAAAATTGGCATGATAATAACCTT
 
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JMFS036E11+           CAATACATTGACCAGCTTCTGTAGCTGTTCCATAACATTCTGTAACACTGCTTCAGTCCC
JMSF030N08+           CAATACATTGACCAGCTTCTGTAGCTGTTCCATAACATTCTGTAACACTGCTTCAGTCCC
JMFF001O03+           CAATACATTGACCAGCTTCTGTAGCTGTTCCATAACATTCTGTAACACTGCTTCAGTCCC
                      ____________________________________________________________
consensus             CAATACATTGACCAGCTTCTGTAGCTGTTCCATAACATTCTGTAACACTGCTTCAGTCCC
 
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JMFS036E11+           AGACACAACTATAGTAAAGAGAGCCTTGTCCTTGTTCAGACCAACAGCAAGGGACTCAAT
JMSF030N08+           AGACACAACTATAGTAAAGAGAGCCTTGTCCTTGTTCAGACCAACAGCAAGGGACTCAAT
JMFF001O03+           AGACACAACTATAGTAAAGAGAGCCTTGTCCTTGTTCAGACCAACAGCAAGGGACTCAAT
                      ____________________________________________________________
consensus             AGACACAACTATAGTAAAGAGAGCCTTGTCCTTGTTCAGACCAACAGCAAGGGACTCAAT
 
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JMFS036E11+           GTTATACCCTCTCCGCGCAAAGACCCCCGCAATCCGATTTATCATTCCGCTTTCATCACC
JMSF030N08+           GTTATACCCTCTCCGCGCAAAGACCCCCGCAATCCGATTTATCATTCCGCTTTCATCACC
JMFF001O03+           GTTATACCCTCTCCGCGCAAAGACCCCCGCAATCCGATTTATCATTCCGCTTTCATCACC
                      ____________________________________________________________
consensus             GTTATACCCTCTCCGCGCAAAGACCCCCGCAATCCGATTTATCATTCCGCTTTCATCACC
 
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JMFS036E11+           AACAAATACAGAGATTGTGTGACGTCTCACCTTTTGTCGAGGGGTTGGGGGAGCTGGATC
JMSF030N08+           AACAAATACAGAGATTGTGTGACGTCTCACCTTTTGTCGAGGGGTTGGGGGAGCTGGATC
JMFF001O03+           AACAAATACAGAGATTGTGTGACGTCTCACCTTTTGTCGAGGGGTTGGGGGAGCTGGATC
                      ____________________________________________________________
consensus             AACAAATACAGAGATTGTGTGACGTCTCACCTTTTGTCGAGGGGTTGGGGGAGCTGGATC
 
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JMFS036E11+           GGAGGTGGAGAGAGTGATTTCACTCGGGGCTTTGTGCTGCCCATCAGCGGCATTTGCGAA
JMSF030N08+           GGAGGTGGAGAGAGTGATTTCACTCGGGGCTTTGTGCTGCCCATCAGCGGCATTTGCGAA
JMFF001O03+           GGAGGTGGAGAGAGTGATTTCACTCGGGGCTTTGTGCTGCCCATCAGCGGCATTTGCGAA
                      ____________________________________________________________
consensus             GGAGGTGGAGAGAGTGATTTCACTCGGGGCTTTGTGCTGCCCATCAGCGGCATTTGCGAA
 
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JMFS036E11+           GACGACGGAGAGTTTCTTGGGCTTCCCGACGTGGATATTAGGGCTTGCCGTGCAGAAGCC
JMSF030N08+           GACGACGGAGAGTTTCTTGGGCTTCCCGACGTGGATATTAGGGCTTGCCGTGCAGAAGCC
JMFF001O03+           GACGACGGAGAGTTTCTTGGGCTTCCCGACGTGGATATTAGGGCTTGCCGTGCAGAAGCC
                      ____________________________________________________________
consensus             GACGACGGAGAGTTTCTTGGGCTTCCCGACGTGGATATTAGGGCTTGCCGTGCAGAAGCC
 
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JMFS036E11+           GAGCTTTCTGGAAAAACTCAGATCATCGCACGGTGGTTTCAGGCGTTGGAATAGAGTAGA
JMSF030N08+           GAGCTTTCTGGAAAAACTCAGATCATCGCACGGTGGTTTCAGGCGTTGGAATAGAGTAGA
JMFF001O03+           GAGCTTTCTGGAAAAACTCAGATCATCGCACGGTGGTTTCAGGCGTTGGAATAGAGTAGA
                      ____________________________________________________________
consensus             GAGCTTTCTGGAAAAACTCAGATCATCGCACGGTGGTTTCAGGCGTTGGAATAGAGTAGA
 
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JMFS036E11+           GTGAGTTGAGATAGCCGCCATCGAG                                   
JMSF030N08+           GTGAGTTGAGATAGCCGCCATCGAGGCTGCGGAACTGT                      
JMFF001O03+           GTGAGTTGAGATAGCCGCCATCGAGGCTGCGGAACTGTGGAAGAGAGCCTGCCTGCGTAA
                      ____________________________________________________________
consensus             GTGAGTTGAGATAGCCGCCATCGAGGCTGCGGAACTGTGGAAGAGAGCCTGCCTGCGTAA
 
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JMFF001O03+           TCGACCTTTTTTAAGGTGGAAATATATACGGGGATATCTGATACGATCCGCCCGAACCGT
                      ____________________________________________________________
consensus             TCGACCTTTTTTAAGGTGGAAATATATACGGGGATATCTGATACGATCCGCCCGAACCGT