Contig 008701:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001A22Sequence558008701 (4)ref|NP_001053457.2|1e-54Os04g0543900 [Oryza sativa Japonica Group] dbj|BAF15371.2| Os04g0543900 [Oryza s734002649 (5)gb|KJB19598.1|2e-112hypothetical protein B456_003G110800 [Gossypium raimondii]
JMFF034G14Sequence594008701 (4)emb|CDX87065.1|3e-80BnaC09g03800D [Brassica napus]769002649 (5)gb|KJB19598.1|2e-126hypothetical protein B456_003G110800 [Gossypium raimondii]
JMFF039A08Sequence572008701 (4)emb|CDX87065.1|9e-104BnaC09g03800D [Brassica napus]744002649 (5)gb|KJB19598.1|8e-101hypothetical protein B456_003G110800 [Gossypium raimondii]
JMSF033L01Sequence642008701 (4)ref|XP_004235200.1|4e-122PREDICTED: glutamate dehydrogenase A [Solanum lycopersicum]717002649 (5)gb|KJB19598.1|1e-117hypothetical protein B456_003G110800 [Gossypium raimondii]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF033L01+ AAGGAGCCCCCGAGATCAATTGGTTTTCCTGTAACAATAGCAGGTGA
                      ____________________________________________________________
consensus AAGGAGCCCCCGAGATCAATTGGTTTTCCTGTAACAATAGCAGGTGA
 
. : . : . : . : . : . :
JMFF039A08+ TCATCCAGAATCCAAGCCATAGTCTGGGAATTAGTGCC
JMSF033L01+ GTGTCCATGAAACTTCGAATACTCATCCAGAATCCAAGCCATAGTCTGGGAATTAGTGCC
                      ____________________________________________________________
consensus GTGTCCATGAAACTTCGAATACTCATCCAGAATCCAAGCCATAGTCTGGGAATTAGTGCC
 
. : . : . : . : . : . :
JMFF039A08+ CATATCAGGAGCCGGCACATCAGTATTAACGCCAATAAGATCATGAATCTTCTGGGTGAA
JMSF033L01+ CATATCAGGAGCCGGCACATCAGTATTAACGCCAATAAGATCATGAATCTTCTGGGTGAA
JMFF034G14+ GGTGAA
                      ____________________________________________________________
consensus CATATCAGGAGCCGGCACATCAGTATTAACGCCAATAAGATCATGAATCTTCTGGGTGAA
 
. : . : . : . : . : . :
JMFF039A08+ GACACGCGTAAGGCGCTCCAACTCACTCTTACTTAAATCCTTAGGATTACATCCAATCCC
JMSF033L01+ GACACGCGTAAGGCGCTCCAACTCACTCTTACTTAAATCCTTAGGATTACATCCAATCCC
JMFF034G14+ GACACGCGTAAGGCGCTCCAACTCACTCTTACTTAAATCCTTAGGATTACATCCAATCCC
                      ____________________________________________________________
consensus GACACGCGTAAGGCGCTCCAACTCACTCTTACTTAAATCCTTAGGATTACATCCAATCCC
 
. : . : . : . : . : . :
JMFF039A08+ ACCCTTAGCTCCACCATATGGAATATCTGCCACCGCACTCTTCCAGGTCATCAGTTGAGC
JMSF033L01+ ACCCTTAGCTCCACCATATGGAATATCTGCCACCGCACTCTTCCAGGTCATCAGTTGAGC
JMFF034G14+ ACCCTTAGCTCCACCATATGGAATATCTGCCACCGCACTCTTCCAGGTCATCAGTTGAGC
JMFF001A22+ CCAGGTCATCAGTTGAGC
                      ____________________________________________________________
consensus ACCCTTAGCTCCACCATATGGAATATCTGCCACCGCACTCTTCCAGGTCATCAGTTGAGC
 
. : . : . : . : . : . :
JMFF039A08+ AAGGGCATTTACCTCATCGGGGTCAACCTCAGGATGGTATCTGATTCCTCCTTTCATGGG
JMSF033L01+ AAGGGCATTTACCTCATCGGGGTCAACCTCAGGATGGTATCTGATTCCTCCTTTCATGGG
JMFF034G14+ AAGGGCATTTACCTCATCGGGGTCAACCTCAGGATGGTATCTGATTCCTCCTTTCATGGG
JMFF001A22+ AAGGGCATTTACCTCATCGGGGTCAACCTCAGGATGGTATCTGATTCCTCCTTTCATGGG
                      ____________________________________________________________
consensus AAGGGCATTTACCTCATCGGGGTCAACCTCAGGATGGTATCTGATTCCTCCTTTCATGGG
 
. : . : . : . : . : . :
JMFF039A08+ CCCACGAGCATTATCATGCTGCACTCTAAATCCAACAAAGGACACCAGAGTTCCATCATC
JMSF033L01+ CCCACGAGCATTATCATGCTGCACTCTAAATCCAACAAAGGACACCAGAGTTCCATCATC
JMFF034G14+ CCCACGAGCATTATCATGCTGCACTCTAAATCCAACAAAGGACACCAGAGTTCCATCATC
JMFF001A22+ CCCACGAGCATTATCATGCTGCACTCTAAATCCAACAAAGGACACCAGAGTTCCATCATC
                      ____________________________________________________________
consensus CCCACGAGCATTATCATGCTGCACTCTAAATCCAACAAAGGACACCAGAGTTCCATCATC
 
. : . : . : . : . : . :
JMFF039A08+ CTTTGGAATTGTGCACTCCACCTTAATTTCTCTGAAGGGGATGAGGAGACTCTTCTCGAT
JMSF033L01+ CTTTGGAATTGTGCACTCCACCTTAATTTCTCTGAAGGGGATGAGGAGACTCTTCTCGAT
JMFF034G14+ CTTTGGAATTGTGCACTCCACCTTAATTTCTCTGAAGGGGATGAGGAGACTCTTCTCGAT
JMFF001A22+ CTTTGGAATTGTGCACTCCACCTTAATTTCTCTGAAGGGGATGAGGAGACTCTTCTCGAT
                      ____________________________________________________________
consensus CTTTGGAATTGTGCACTCCACCTTAATTTCTCTGAAGGGGATGAGGAGACTCTTCTCGAT
 
. : . : . : . : . : . :
JMFF039A08+ CTTGGAGTCCAGACCAAGAATGCGGGCCGCCTGGCGAAAGTTACGGGTGGTGGCTGCAAG
JMSF033L01+ CTTGGAGTCCAGACCAAGAATGCGGGCCGCCTGGCGAAAGTTACGGGTGGTGGCTGCAAG
JMFF034G14+ CTTGGAGTCCAGACCAAGAATGCGGGCCGCCTGGCGAAAGTTACGGGTGGTGGCTGCAAG
JMFF001A22+ CTTGGAGTCCAGACCAAGAATGCGGGCCGCCTGGCGAAAGTTACGGGTGGTGGCTGCAAG
                      ____________________________________________________________
consensus CTTGGAGTCCAGACCAAGAATGCGGGCCGCCTGGCGAAAGTTACGGGTGGTGGCTGCAAG
 
. : . : . : . : . : . :
JMFF039A08+ GGCGTTCATGGCAGGCAAATCTCCGAGGAAAATTAACGAAAAGGGAAAGACAAAAACAGC
JMSF033L01+ GGCGTTCATGGCAGGCAAATCTCCGAGGAAAATTAACGAAAAGGGAAAGACAAAAACAGC
JMFF034G14+ GGCGTTCATGGCAGGCAAATCTCCGAGGAAAATTAACGAAAAGGGAAAGACAAAAACAGC
JMFF001A22+ GGCGTTCATGGCAGGCAAATCTCCGAGGAAAATTAACGAAAAGGGAAAGACAAAAACAGC
                      ____________________________________________________________
consensus GGCGTTCATGGCAGGCAAATCTCCGAGGAAAATTAACGAAAAGGGAAAGACAAAAACAGC
 
. : . : . : . : . : . :
JMFF039A08+ AGATCAAAATAGTCCCAGCCTCCAAGGAAACAGGACGATACAACAAGCAACT
JMSF033L01+ AGATCAAAATAGTCCCAGCCTCCAAGGAAACAGGACGATACAACAAGCAACT
JMFF034G14+ AGATCAAAATAGTCCCAGCCTCCAAGGAAACAGGACGATACAACAAGCAACTGTGATCTA
JMFF001A22+ AGATCAAAATAGTCCCAGCCTCCAAGGAAACAGGACGATACAACAAGCAACTGTGATCTA
                      ____________________________________________________________
consensus AGATCAAAATAGTCCCAGCCTCCAAGGAAACAGGACGATACAACAAGCAACTGTGATCTA
 
. : . : . : . : . : . :
JMFF034G14+ TGAATTGCAGACAAGCAATGTTATATATATATGGAGAAATAAAGAAGCAAAGATTGTAAA
JMFF001A22+ TGAATTGCAGACAAGCAATGTTATATATATATGGAGAAATAAAGAAGCAAAGATTGTAAA
                      ____________________________________________________________
consensus TGAATTGCAGACAAGCAATGTTATATATATATGGAGAAATAAAGAAGCAAAGATTGTAAA
 
. : . : . : . : . : . :
JMFF034G14+ ATATGTTAGGTCTGACGGGGCAGTGACAGAGTTAGATTTCAACAATCT
JMFF001A22+ ATATGTTAGGTCTGACGGGGCAGTGACAGAGTTAGATTTCAACAATCTGAATTTGGTCTT
                      ____________________________________________________________
consensus ATATGTTAGGTCTGACGGGGCAGTGACAGAGTTAGATTTCAACAATCTGAATTTGGTCTT
 
. : . : . : . : . : . :
JMFF001A22+ TAAGGCGTCGGCGGATATAGGTACGCGGCGACTGGTGGATAATTTCTTGTCGTAGACAAT
                      ____________________________________________________________
consensus TAAGGCGTCGGCGGATATAGGTACGCGGCGACTGGTGGATAATTTCTTGTCGTAGACAAT