Contig 008696:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP003H12Sequence382008696 (4)ref|XP_006830462.1|5e-17hypothetical protein AMTR_s00115p00112450 [Amborella trichopoda] gb|ERM97878.1| 382008696 (4)ref|XP_006830462.1|5e-17hypothetical protein AMTR_s00115p00112450 [Amborella trichopoda] gb|ERM97878.1|
JMCP010A11Sequence628008696 (4)ref|XP_003588355.1|4e-54Mitochondrial protein, putative [Medicago truncatula]
JMFS050C10Sequence376008696 (4)gb|AGC78890.1|2e-21hypothetical protein (mitochondrion) [Vicia faba] gb|AGC79003.1| hypothetical pr

Alignment

This contig is upended


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JMCP010A11+                                           CATCGTGTTACCACTTAGCAGAGTCCTG
                      ____________________________________________________________
consensus                                             CATCGTGTTACCACTTAGCAGAGTCCTG
 
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JMCP010A11+           TGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAAAGATAGG
                      ____________________________________________________________
consensus             TGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAAAGATAGG
 
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JMFS050C10+                                               GCCGAGTTCCTTTGACATGGTTCT
JMCP010A11+           AGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCT
                      ____________________________________________________________
consensus             AGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTTGACATGGTTCT
 
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JMFS050C10+           CTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTACGGTCAGTTC
JMCP010A11+           CTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTACGGTCAGTTC
                      ____________________________________________________________
consensus             CTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTACGGTCAGTTC
 
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JMFS050C10+           ACCGGGAGGATCGCCCTCCCAATTCGAAGTTTTTTCCTGGAAGTTTCAACCTTGTTGACT
JMCP010A11+           ACCGGGAGGATCGCCCTCCCAATTCGAAGTTTTTTCCTGGAAGTTTCAACCTTGTTGACT
JMCP003H12+                                                 GGAAGTTTCAACCTTGTTGACT
rJMCP003H12+                                                GGAAGTTTCAACCTTGTTGACT
                      ____________________________________________________________
consensus             ACCGGGAGGATCGCCCTCCCAATTCGAAGTTTTTTCCTGGAAGTTTCAACCTTGTTGACT
 
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JMFS050C10+           ATGACAACAGTCGCGACTATAAACAGACTCGTGACTATGGCAGGGCGGTACGCTCTGCTC
JMCP010A11+           ATGACAACAGTCGCGACTATAAACAGACTCGTGACTATGGCAGGGCGGTACGCTCTGCCC
JMCP003H12+           ATGACAACAGTCGCGACTATAAACAGACTCGTGACTATGGCAGGGCGGTACGCTCTGCTC
rJMCP003H12+          ATGACAACAGTCGCGACTATAAACAGACTCGTGACTATGGCAGGGCGGTACGCTCTGCTC
                      ____________________________________________________________
consensus             ATGACAACAGTCGCGACTATAAACAGACTCGTGACTATGGCAGGGCGGTACGCTCTGCTC
 
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JMFS050C10+           TCTCGCGACCCCTACTCTAATCAAAAGACTAAAGGCCCCTACTGAAGATAGGTCGCCAAA
JMCP010A11+           TCTCGCGACCCCTACTCTAATCAAAAGACTAAAGGCCCCTACTGAAGATAGGTCGCCAAA
JMCP003H12+           TCTCGCGACCCCTACTCTAATCAAAAGACTAAAGGCCCCTACTGAAGATAGGTCGCCAAA
rJMCP003H12+          TCTCGCGACCCCTACTCTAATCAAAAGACTAAAGGCCCCTACTGAAGATAGGTCGCCAAA
                      ____________________________________________________________
consensus             TCTCGCGACCCCTACTCTAATCAAAAGACTAAAGGCCCCTACTGAAGATAGGTCGCCAAA
 
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JMFS050C10+           CTACGACGAGAGTTTCGCCTTTTGAAGCGCCAGTCGCGTAGGGCCAGGCCGAGTCAGAAA
JMCP010A11+           CTACGACGAGAGTTTCGCCTTTTGAAGCGCCAGTCGCGTAGGGCCAGGTCGAGTCAGAAA
JMCP003H12+           CTACGACGAGAGTTTCGCCTTTTGAAGCGCCAGTCGCGTAGGGCCAGGCCGAGTCAGAAA
rJMCP003H12+          CTACGACGAGAGTTTCGCCTTTTGAAGCGCCAGTCGCGTAGGGCCAGGCCGAGTCAGAAA
                      ____________________________________________________________
consensus             CTACGACGAGAGTTTCGCCTTTTGAAGCGCCAGTCGCGTAGGGCCAGGCCGAGTCAGAAA
 
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JMFS050C10+           GGCTTTGATGACTCAAGGTTCATATTAGGGAAAGGAGAGTGAGGGGAAGAGG        
JMCP010A11+           GGCTTTGATGACTCAAGGTTCATATTAGGGAAAGGAGAGTGAGGGGAAGAGGGGGCAGCC
JMCP003H12+           GGCTTTGATGACTCAAGGTTCGTATTAGGGAAAGGAGAGTGAGGGGAAGAGGGGGCAGCC
rJMCP003H12+          GGCTTTGATGACTCAAGGTTCGTATTAGGGAAAGGAGAGTGAGGGGAAGAGGGGGCAGCC
                      ____________________________________________________________
consensus             GGCTTTGATGACTCAAGGTTCGTATTAGGGAAAGGAGAGTGAGGGGAAGAGGGGGCAGCC
 
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JMCP010A11+           CTCGGCCCGATCATCCAATTCGCTCCAACAGACAGGCATGGTTCTGTAGTCAAAGCAACT
JMCP003H12+           CTCGGCCCGATCATCCAATTCGCTCCAACAGACAGGCATGGTTCTGTAGTCAAAGCAACT
rJMCP003H12+          CTCGGCCCGATCATCCAATTCGCTCCAACAGACAGGCATGGTTCTGTAGTCAAAGCAACT
                      ____________________________________________________________
consensus             CTCGGCCCGATCATCCAATTCGCTCCAACAGACAGGCATGGTTCTGTAGTCAAAGCAACT
 
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JMCP010A11+           TCGTCACTTTCGTGTACCCATCGGACGGCAGCCCTTTCGGGGGTTCCTTAGGGACCGATT
JMCP003H12+           TCGTCACTTTCGTGTACCCATCGGACGGCAGCCCTTTCGGGGGTTCCTTAGGGACCGATT
rJMCP003H12+          TCGTCACTTTCGTGTACCCATCGGACGGCAGCCCTTTCGGGGGTTCCTTAGGGACCGATT
                      ____________________________________________________________
consensus             TCGTCACTTTCGTGTACCCATCGGACGGCAGCCCTTTCGGGGGTTCCTTAGGGACCGATT