Contig 008692:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP003D12Sequence493008692 (2)627001515 (51)ref|XP_011075483.1|2e-88PREDICTED: 40S ribosomal protein S9-2 [Sesamum indicum] ref|XP_011075484.1| PRED
JMCP008B01Sequence348008692 (2)ref|XP_009802975.1|9e-07PREDICTED: PH-interacting protein-like [Nicotiana sylvestris] ref|XP_009802976.1

Alignment

This contig is upended


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JMCP003D12+                              GAGTGGTATTTCACTTTTATTATCCAACTATCAATTTCGAC
                      ____________________________________________________________
consensus                                GAGTGGTATTTCACTTTTATTATCCAACTATCAATTTCGAC
 
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JMCP003D12+           AAAAAGTAATCCCCCAAGAACATatGAATGGTGAACCATTTTTGaCTAATTTTTAAGCAT
                      ____________________________________________________________
consensus             AAAAAGTAATCCCCCAAGAACATTAGAATGGTGAACCATTTTTGTCTAATTTTTAAGCAT
 
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JMCP003D12+           CAGAGACTATTcgTGGAgaGAAATTGGACAATAATAATTCCCCAACTATTAAAAAgTTGA
                      ____________________________________________________________
consensus             CAGAGACTATTGCTGGACTGAAATTGGACAATAATAATTCCCCAACTATTAAAAACTTGA
 
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JMCP003D12+           TAAATCCAGTCCaCTATTAGGTTTAATAAAGGACCCTAACAAAGGACCTTTTCTATCCAC
JMCP008B01+                       TCTATTAGGTaattaAAAGGACCCTAACAAAGGACCTTTTCTATCCAC
                      ____________________________________________________________
consensus             TAAATCCAGTCCTCTATTAGGTTTAATAAAGGACCCTAACAAAGGACCTTTTCTATCCAC
 
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JMCP003D12+           TTCTCTGTAGGTGGGGGATTATTacTAAAAATTGATAGTAGGGTtCTGAGAGGGAATACC
JMCP008B01+           TTCTCTGTAGGTGGGGGATTATTTGTAAAAATTGATAGTAGGGTACCGAGAGGGAATACC
                      ____________________________________________________________
consensus             TTCTCTGTAGGTGGGGGATTATTTGTAAAAATTGATAGTAGGGTACTGAGAGGGAATACC
 
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JMCP003D12+           ACCATAGaaaGAGGATTAAAATgtcATTTAGTTCCtacgTTTAaatTAGAAAGTAGGGAT
JMCP008B01+           ACCATAGTTTGAGGATTAAAATCAGATTTAGTTCCATGCTTTATTATAGAAAGTAGGGAT
                      ____________________________________________________________
consensus             ACCATAGTTTGAGGATTAAAATCAGATTTAGTTCCATGCTTTATTATAGAAAGTAGGGAT
 
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JMCP003D12+           gaGggaAATTCAACACCACAGcTTGCGTAaattagaaTAAAAGAAATATAtaccaTCAGC
JMCP008B01+           CTGCCTAATTCAACACCACAGGTTGCGTATTAATCTTTAAAAGAAATATAATGGTTCAGC
                      ____________________________________________________________
consensus             CTGCCTAATTCAACACCACAGGTTGCGTATTAATCTTTAAAAGAAATATAATGGTTCAGC
 
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JMCP003D12+           TCTCTTTATTTTAATAGTAAATTAacTAAagaTgaATATTCCAGTGGCGCTTGCCAGATc
JMCP008B01+           TCTCTTTATTTTAATAGTAAATTATGTAATCTTCTATATTCCAGTGGCGCTTGCCAGATG
                      ____________________________________________________________
consensus             TCTCTTTATTTTAATAGTAAATTATGTAATCTTCTATATTCCAGTGGCGCTTGCCAGATG
 
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JMCP003D12+           GGaacggaATTTCAGTTTTGCGTGGACACACA                            
JMCP008B01+           GGTTGCCTATTTCAGTTTTGCGTGGACACACAGGAGGTGTTACTGCCATTGCATTCAGTC
                      ____________________________________________________________
consensus             GGTTGCCTATTTCAGTTTTGCGTGGACACACAGGAGGTGTTACTGCCATTGCATTCAGTC