Contig 008687:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF045B01Sequence646012171 (3)ref|XP_009769841.1|1e-27PREDICTED: auxilin-related protein 1 [Nicotiana sylvestris]609008687 (4)ref|XP_009625909.1|7e-62PREDICTED: auxilin-like protein 1 [Nicotiana tomentosiformis]
JMSF007C03Sequence337011866 (41)795008687 (4)ref|XP_009625909.1|8e-81PREDICTED: auxilin-like protein 1 [Nicotiana tomentosiformis]
JMSF047K04Sequence158012171 (3)732008687 (4)ref|XP_009625909.1|2e-79PREDICTED: auxilin-like protein 1 [Nicotiana tomentosiformis]
JMSF052K22Sequence121012171 (3)830008687 (4)ref|XP_009625909.1|3e-80PREDICTED: auxilin-like protein 1 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF007C03+                           GAAAAAGACACATAGTGCAGGGGACATATTAAGCAATACCAGC
                      ____________________________________________________________
consensus                              GAAAAAGACACATAGTGCAGGGGACATATTAAGCAATACCAGC
 
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rJMSF007C03+          ACGGACCACATGTTTGACGGATTGTTCAACAATAATGGAGGAGGCACGAAAGATAAGTGG
                      ____________________________________________________________
consensus             ACGGACCACATGTTTGACGGATTGTTCAACAATAATGGAGGAGGCACGAAAGATAAGTGG
 
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rJMSF007C03+          ACCTCTCATGGGACCCAATCTACTGGAAAGAGCAAATCACCTTTGAAAAATTTTGTTGAT
rJMSF052K22+                   GGGACCCAATCTACTGGAAAGAGCAAATCACCNTTGAAAAATTTTGTTGAT
                      ____________________________________________________________
consensus             ACCTCTCATGGGACCCAATCTACTGGAAAGAGCAAATCACCTTTGAAAAATTTTGTTGAT
 
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rJMSF007C03+          GACTTCTCCTCCTCTCTTTTTGGAGACCTTGGCTCGTCATTTGATGAATTCCATGAAGTA
rJMSF047K04+                                 AGACCTTGGCTCGTCATTTGATGAATTCCATGAAGTA
rJMSF052K22+          GACTTCTCCTTCTCTCTTTTTGGAGACCTTGGCTCGTCATTTGATGAATTCCATGAAGTA
                      ____________________________________________________________
consensus             GACTTCTCCTTCTCTCTTTTTGGAGACCTTGGCTCGTCATTTGATGAATTCCATGAAGTA
 
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rJMSF007C03+          GAAGGAGAAAGTGTAGAAAGAAGAAGAGCTAGATTGAATCACCATACAAGGACCCGGGAG
rJMSF047K04+          GAAGGAGAAAGTGTAGAAAGAAGAAGAGCTAGATTGAATCACCATACAAGGACCCGGGAG
rJMSF052K22+          GAAGGAGAAAGTGTAGAAAGAAGAAGAGCTAGATTGAATCACCATACAAGGACCCGGGAG
                      ____________________________________________________________
consensus             GAAGGAGAAAGTGTAGAAAGAAGAAGAGCTAGATTGAATCACCATACAAGGACCCGGGAG
 
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rJMSF007C03+          CGAATGGCTAGAGCTCTGGCTGAAAAAAATCAGCGTGATCTTCAGACACAGCAAGAGCAA
rJMSF047K04+          CGAATGGCTAGAGCTCTGGCTGAAAAAAATCAGCGTGATCTTCAGACACAGCAAGAGCAA
rJMFF045B01+                           GGCTGAAAAAAATCAGCGTGATCTTCAGACACAGCAAGAGCAA
rJMSF052K22+          CGAATGGCTAGAGCTCTGGCTGAAAAAAATCAGCGTGATCTTCAGACACAGCAAGAGCAA
                      ____________________________________________________________
consensus             CGAATGGCTAGAGCTCTGGCTGAAAAAAATCAGCGTGATCTTCAGACACAGCAAGAGCAA
 
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rJMSF007C03+          GACGAGAAGAGTAGGCTTGCTGAAGCTTTGGATGAGGAAATAAAGCGTTGGGCTGCAGGA
rJMSF047K04+          GACGAGAAGAGTAGGCTTGCTGAAGCTTTGGATGAGGAAATAAAGCGTTGGGCTGCAGGA
rJMFF045B01+          GACGAGAAGAGTAGGCTTGCTGAAGCTTTGGATGAGGAAATAAAGCGTTGGGCTGCAGGA
rJMSF052K22+          GACGAGAAGAGTAGGCTTGCTGAAGCTTTGGATGAGGAAATAAAGCGTTGGGCTGCAGGA
                      ____________________________________________________________
consensus             GACGAGAAGAGTAGGCTTGCTGAAGCTTTGGATGAGGAAATAAAGCGTTGGGCTGCAGGA
 
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rJMSF007C03+          AAGGAGGGCAACCTTCGTGCATTACTCTCATCGTTGCAATATGTGCTATGGCCTGAATGT
rJMSF047K04+          AAGGAGGGCAACCTTCGTGCATTACTCTCATCGTTGCAATATGTGCTATGGCCTGAATGT
rJMFF045B01+          AAGGAGGGCAACCTTCGTGCATTACTCTCATCGTTGCAATATGTGCTATGGCCTGAATGT
rJMSF052K22+          AAGGAGGGCAACCTTCGTGCATTACTCTCATCGTTGCAATATGTGCTATGGCCTGAATGT
                      ____________________________________________________________
consensus             AAGGAGGGCAACCTTCGTGCATTACTCTCATCGTTGCAATATGTGCTATGGCCTGAATGT
 
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rJMSF007C03+          GGTTGGCAGGCAGTTTCATTGACTGATTTGATCACTTCAACATCTGTCAAGAAGGTCTAT
rJMSF047K04+          GGTTGGCAGGCAGTTTCATTGACTGATTTGATCACTTCAACATCTGTCAAGAAGGTCTAT
rJMFF045B01+          GGTTGGCAGGCAGTTTCATTGACTGATTTGATCACTTCAACATCTGTCAAGAAGGTCTAT
rJMSF052K22+          GGTTGGCAGGCAGTTTCATTGACTGATTTGATCACTTCAACATCTGTCAAGAAGGTCTAT
                      ____________________________________________________________
consensus             GGTTGGCAGGCAGTTTCATTGACTGATTTGATCACTTCAACATCTGTCAAGAAGGTCTAT
 
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rJMSF007C03+          CATAAGGCAACTTTATGTGTTCACCCAGACAAGGTTCAACAAAAGAGGGCAAGTCTCCGA
rJMSF047K04+          CATAAGGCAACTTTATGTGTTCACCCAGACAAGGTTCAACAAAAGAGGGCAAGTCTCCGA
rJMFF045B01+          CATAAGGCAACTTTATGTGTTCACCCAGACAAGGTTCAACAAAAGAGGGCAAGTCTCCGA
rJMSF052K22+          CATAAGGCAACTTTATGTGTTCACCCAGACAAGGTTCAACAAAAGAGGGCAAGTCTCCGA
                      ____________________________________________________________
consensus             CATAAGGCAACTTTATGTGTTCACCCAGACAAGGTTCAACAAAAGAGGGCAAGTCTCCGA
 
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rJMSF007C03+          GAAAAGTATATTGCAGAGAAGGTTTTTGATATTCTGAAGGAAGCTTTTGGCAAATTCAAC
rJMSF047K04+          GAAAAGTATATTGCAGAGAAGGTTTTTGATATTCTGAAGGAAGCTTTTGGCAAATTCAAC
rJMFF045B01+          GAAAAGTATATTGCAGAGAAGGTTTTTGATATTCTGAAGGAAGCTTTTGGCAAATTCAAC
rJMSF052K22+          GAAAAGTATATTGCAGAGAAGGTTTTTGATATTCTGAAGGAAGCTTTTGGCAAATTCAAC
                      ____________________________________________________________
consensus             GAAAAGTATATTGCAGAGAAGGTTTTTGATATTCTGAAGGAAGCTTTTGGCAAATTCAAC
 
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rJMSF007C03+          GCCGAAGAACTAAGATGAGTCAGTATCATATCATCTTNGGTGCCTTTTTATCTGTTAGTG
rJMSF047K04+          GCCGAAGAACTAAGATGAGTCAGTATCATATCATCTTTGGTGCCTTTTTAT-TGTTAGTG
rJMFF045B01+          GCCGAAGAACTAAGATGAGTCAGTATCATATCATCTTTGGTGCCTTTTTAT-TGTTAGTG
rJMSF052K22+          GCCGAAGAACTAAGATGAGTCAGTATCATATCATCTTTGGTGCCTTTTTAT-TGTTAGTG
                      ____________________________________________________________
consensus             GCCGAAGAACTAAGATGAGTCAGTATCATATCATCTTTGGTGCCTTTTTAT-TGTTAGTG
 
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rJMSF007C03+          GACAAACTCTGNTAATCCACNTCATAAAGGAGGGTATGGCCTTTGCAATCGTTACTCGTT
rJMSF047K04+          GACAAACTCTGTTAATCCACATCATAAAGGAGGGTATGGCCCTTGCAATCGTTACTCGTT
rJMFF045B01+          GACAAACTCTGTTAATCCACATCATAAAGGAGGGTATGGCCTTTGCAATCGTTACTCGTT
rJMSF052K22+          GACAAACTCTGTTAATCCACATCATAAAGGAGGGTATGGCCTTTGCAATCGTTACTCGTT
                      ____________________________________________________________
consensus             GACAAACTCTGTTAATCCACATCATAAAGGAGGGTATGGCCTTTGCAATCGTTACTCGTT
 
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rJMSF007C03+          AGTTATTGCATGGATTTGTTTATNTATTGTT                             
rJMSF047K04+          AGTTATTGCATGGATTTGTTTATTTATTGTTTGTTCTAAATGGTTTTTTGCAAACAAGTT
rJMFF045B01+          AGTTATTGCATGGATTTGTTTATTTATTGTTTGTTCTAAATGGTTTTTTGCAAACAAGTT
rJMSF052K22+          AGTTATTGCATGGATTTGTTTATTTATTGTTTGTTCTAAATGGTTTTTTGCAAACAAGTT
                      ____________________________________________________________
consensus             AGTTATTGCATGGATTTGTTTATTTATTGTTTGTTCTAAATGGTTTTTTGCAAACAAGTT
 
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rJMSF047K04+          GAATACTTCACATACTATGCCCAGTTGGGTTGTGTTGTCATAGCTTTNTGCATTGTGCAT
rJMFF045B01+          GAATACTTCACATACTATGCCCAGTTGGGTTGTGTTGTCATAGCTTTTTGCATTGTGCAT
rJMSF052K22+          GAATACTTCACATACTATGCCCAGTTGGGTTGTGTTGTCATAGCTTTTTGCATTGTGCAT
                      ____________________________________________________________
consensus             GAATACTTCACATACTATGCCCAGTTGGGTTGTGTTGTCATAGCTTTTTGCATTGTGCAT
 
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rJMSF047K04+          AATTTGTTCAATTAGATGCTAAAGATCA                                
rJMFF045B01+          AATTTGTTCAATTAGATGCTAAAGATC                                 
rJMSF052K22+          AATTTGTTCAATTAGATGCTAAAGATCANTGAGGGTTCACTCTTATATTAACGGCGTCAT
                      ____________________________________________________________
consensus             AATTTGTTCAATTAGATGCTAAAGATCANTGAGGGTTCACTCTTATATTAACGGCGTCAT