| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF006L01 | Sequence | 426 | 000604 (4) | ref|XP_004230025.1| | 78.6 | PREDICTED: uncharacterized protein LOC101265170 [Solanum lycopersicum] | 496 | 008666 (5) | ref|XP_004230025.1| | 183 | PREDICTED: uncharacterized protein LOC101265170 [Solanum lycopersicum] |
| JMSF006L03 | Sequence | 271 | 000573 (73) | gb|EJL17496.1| | 4e-35 | periplasmic copper/silver-binding protein [Shigella flexneri 6603-63] | 458 | 008666 (5) | ref|XP_004230025.1| | 168 | PREDICTED: uncharacterized protein LOC101265170 [Solanum lycopersicum] |
| JMSF028D16 | Sequence | 601 | 000604 (4) | gb|EYU38284.1| | 2e-49 | hypothetical protein MIMGU_mgv1a014947mg [Erythranthe guttata] | 770 | 008666 (5) | ref|XP_009802888.1| | 3e-102 | PREDICTED: uncharacterized protein LOC104248339 isoform X4 [Nicotiana sylvestri |
| JMSF028G15 | Sequence | 649 | 000604 (4) | gb|EYU38284.1| | 1e-57 | hypothetical protein MIMGU_mgv1a014947mg [Erythranthe guttata] | 747 | 008666 (5) | ref|XP_009802888.1| | 5e-96 | PREDICTED: uncharacterized protein LOC104248339 isoform X4 [Nicotiana sylvestri |
| JMSF049A04 | Sequence | 661 | 000604 (4) | emb|CDP18664.1| | 3e-58 | unnamed protein product [Coffea canephora] | 744 | 008666 (5) | ref|XP_009802888.1| | 3e-95 | PREDICTED: uncharacterized protein LOC104248339 isoform X4 [Nicotiana sylvestri |
This contig is upended
. : . : . : . : . : . :
rJMSF028D16+ AGATGCTTCGTTT
____________________________________________________________
consensus AGATGCTTCGTTT
. : . : . : . : . : . :
rJMSF028D16+ GGGGGTCTTTTAAATTTTGATGCCGAGGTTTTCTTCCCTCTCGATCATTATAGTTATCCT
rJMSF028G15+ TTTCTTCCCTCTCGATCATTATATTTATCCT
rJMSF049A04+ TCCCTCTCGATCATTATAGTTATCCT
____________________________________________________________
consensus GGGGGTCTTTTAAATTTTGATGCCGAGGTTTTCTTCCCTCTCGATCATTATAGTTATCCT
. : . : . : . : . : . :
rJMSF028D16+ AGAGGTTATCCTAAGAAGAAAGGCAAAGAATCTGATCAATCTCATATCATGACTGCAGAG
rJMSF028G15+ AGAGGTTATCCTAAGAAGAAAGGCAAAGAATCTGATCAATCTCATATCATGACTGCAGAG
rJMSF049A04+ AGAGGTTATCCTAAGAAGAAAGGCAAAGAATCTGATCAATCTCATATCATGACTGCAGAG
____________________________________________________________
consensus AGAGGTTATCCTAAGAAGAAAGGCAAAGAATCTGATCAATCTCATATCATGACTGCAGAG
. : . : . : . : . : . :
rJMSF028D16+ TCGTTGTTGGTGCAGCTATTGAAAGATTTGAAAGTCGCTTTCTGGCCATTTCAACACGAT
rJMSF028G15+ TCGTTGTTGGTGCAGCTATTGAAAGATTTGAAAGTCGCTTTCTGGCCATTTCAACACGAT
rJMSF049A04+ TCGTTGTTGGTGCAGCTATTGAAAGATTTGAAAGTCGCTTTCTGGCCATTTCAACACGAT
____________________________________________________________
consensus TCGTTGTTGGTGCAGCTATTGAAAGATTTGAAAGTCGCTTTCTGGCCATTTCAACACGAT
. : . : . : . : . : . :
rJMSF028D16+ CCTACTAGGAGTCCCTTTCTGAGGGCAGCGGATGCTGCTAACTGCTCCGAAAGAACTCAA
rJMSF028G15+ CCTACTAGGAGTCCCTTTCTGAGGGCAGCGGATGCTGCTAACTGCTCCGAAAGAACTCAA
rJMSF049A04+ CCTACTAGGAGTCCCTTTCTGAGGGCAGCGGATGCTGCTAACTGCTCCGAAAGAACTCAA
____________________________________________________________
consensus CCTACTAGGAGTCCCTTTCTGAGGGCAGCGGATGCTGCTAACTGCTCCGAAAGAACTCAA
. : . : . : . : . : . :
rJMSF028D16+ AACACCAAAGAGAGTGCCTTGGAGCTGGCATCTGTTAAGGCTGCTCAGCATAGGCTGCAA
rJMSF028G15+ AACACCAAAGAGAGTGCCTTGGAGCTGGCATCTGTTAAGGCTGCTCAGCATAGGCTGCAA
rJMSF006L01+ CTGCTCAGCATAGGCTGCAA
rJMSF049A04+ AACACCAAAGAGAGTGCCTTGGAGCTGGCATCTGTTAAGGCTGCTCAGCATAGGCTGCAA
____________________________________________________________
consensus AACACCAAAGAGAGTGCCTTGGAGCTGGCATCTGTTAAGGCTGCTCAGCATAGGCTGCAA
. : . : . : . : . : . :
rJMSF028D16+ AGGGGTGTTTGGACCAGTGTTCGTTTTGGGGATATGAGACGCGCACTCTCAGCATGTGAA
rJMSF028G15+ AGGGGTGTTTGGACCAGTGTTCGTTTTGGGGATATGAGACGCGCACTCTCAGCATGTGAA
rJMSF006L03+ GTTTGGACCAGTGTTCGNTTTGGGGATATGAGACGCGCACTCTCAGCATGTGAA
rJMSF006L01+ AGGGGTGTTTGGACCAGTGTTCGTTTTGGGGATATGAGACGCGCACTCTCAGCATGTGAA
rJMSF049A04+ AGGGGTGTTTGGACCAGTGTTCGTTTTGGGGATATGAGACGCGCACTCTCAGCATGTGAA
____________________________________________________________
consensus AGGGGTGTTTGGACCAGTGTTCGTTTTGGGGATATGAGACGCGCACTCTCAGCATGTGAA
. : . : . : . : . : . :
rJMSF028D16+ CGGCTTATCCTCCTAAAAACCGACCCCAAGGAAACGAGGGACTATGGCGTTCTTCTTTAC
rJMSF028G15+ CGGCTTATCCTCCTAAAAACCGACCCCAAGGAAACGAGGGACTATGGCGTTCTTCTTTAC
rJMSF006L03+ CGGCTTATCCTCCTAAAAACCGACCCCAAGGAAACGAGGGACTATGGCGTTCTTCTTTAC
rJMSF006L01+ CGGCTTATCCTCCTAAAAACCGACCCCAAGGAAACGAGGGACTATGGCGTTCTTCTTTAC
rJMSF049A04+ CGGCTTATCCTCCTAAAAACCGACCCCAAGGAAACGAGGGACTATGGCGTTCTTCTTTAC
____________________________________________________________
consensus CGGCTTATCCTCCTAAAAACCGACCCCAAGGAAACGAGGGACTATGGCGTTCTTCTTTAC
. : . : . : . : . : . :
rJMSF028D16+ CACTGTGGGTTTTACAAGGAATCACTCCAGTACCTTTCGCTATATCAGGATACGAAGAAT
rJMSF028G15+ CACTGTGGGTTTTACAAGGAATCACTCCAGTACCTTTCGCTATATCAGGATACGAAGAAT
rJMSF006L03+ CACTGTGGGTTTTACAAGGAATCACTCCAGTACCTTTCGCTATATCAGGATACGAAGAAT
rJMSF006L01+ CACTGTGGGTTTTACAAGGAATCACTCCAGTACCTTTCGCTATATCAGGATACGAAGAAT
rJMSF049A04+ CACTGTGGGTTTTACAAGGAATCACTCCAGTACCTTTCGCTATATCAGGATACGAAGAAT
____________________________________________________________
consensus CACTGTGGGTTTTACAAGGAATCACTCCAGTACCTTTCGCTATATCAGGATACGAAGAAT
. : . : . : . : . : . :
rJMSF028D16+ GAAGTAATCGATCCATCTGACAAGGAGGATGAAGCTGTGCAGAAATTAATGTTTCGCGTA
rJMSF028G15+ GAAGTAATCGATCCATCTGACAAGGAGGATGAAGCTGTGCAGAAATTAATGTTTCGCGTA
rJMSF006L03+ GAAGTAATCGATCCATCTGACAAGGAGGATGAAGCTGTGCAGAAATTAATGTTTCGCGTA
rJMSF006L01+ GAAGTAATCGATCCATCTGACAAGGAGGATGAAGCTGTGCAGAAATTAATGTTTCGCGTA
rJMSF049A04+ GAAGTAATCGATCCATCTGACAAGGAGGATGAAGCTGTGCAGAAATTAATGTTTCGCGTA
____________________________________________________________
consensus GAAGTAATCGATCCATCTGACAAGGAGGATGAAGCTGTGCAGAAATTAATGTTTCGCGTA
. : . : . : . : . : . :
rJMSF028D16+ AACTTGATCTTGATGGAGGAAGGCTGGTCTAGGCCTGCAGATAACGGAAGTCTCCTTCGC
rJMSF028G15+ AACTTGATCTTGATGGAGGAAGGCTGGTCTAGGCCTGCAGATAACGGAAGTCTCCTTCGC
rJMSF006L03+ AACTTGATCTTGATGGAGGAAGGCTGGTCTAGGCCTGCAGATAACGGAAGTCTCCTTCGC
rJMSF006L01+ AACTTGATCTTGATGGAGGAAGGCTGGTCTAGGCCTGCAGATAACGGAAGTCTCCTTCGC
rJMSF049A04+ AACTTGATCTTGATGGAGGAAGGCTGGTCTAGGCCTGCAGATAACGGAAGTCTCCTTCGC
____________________________________________________________
consensus AACTTGATCTTGATGGAGGAAGGCTGGTCTAGGCCTGCAGATAACGGAAGTCTCCTTCGC
. : . : . : . : . : . :
rJMSF028D16+ AACAACTCTGAACCCTGGTAATGTACAGCGTTATTCTCCGTCTTAGTTAATGAAGAAACA
rJMSF028G15+ AACAACTCTGAACCCTGGTAATGTACAGCGTTATTCTCCGTCTTAGTTAATGAAGAAACA
rJMSF006L03+ AACAACTNTGAACCCTGGTAATGTACAGCGTTATTCTCCGTCTTAGTTAATGAAGAAACA
rJMSF006L01+ AACAACTCTGAACCCTGGTAATGTACAGCGTTATTCTCCGTCTTAGTTAATGAAGAAACA
rJMSF049A04+ AACAACTCTGAACCCTGGTAATGTACAGCGTTATTCTCCGTCTTAGTTAATGAAGAAACA
____________________________________________________________
consensus AACAACTCTGAACCCTGGTAATGTACAGCGTTATTCTCCGTCTTAGTTAATGAAGAAACA
. : . : . : . : . : . :
rJMSF028D16+ CAACAAAAGTT-TTTGTTCCTTCACAATCTACTATGTTATATCGCTTAGAAA-CTATAGT
rJMSF028G15+ CAACAAAAGTT-TTTGTTCCTTCACAATCTACTATGTTATATAGCTTAGAAA-CTATAGT
rJMSF006L03+ CAACAAAAGTTCTTTGTTCCTTCACAATNTACTATGTTATANAGCTTAGAAACCTATAGT
rJMSF006L01+ CAACAAAAGTT-TTTGTTCCTTCACAATCTACTATGTTATATAGCTTAGAAA-CTATAGT
rJMSF049A04+ CAACAAAAGTT-TTTGTTCCTTCACAATCTACTATGTTATATAGCTTAGAAA-CTATAGT
____________________________________________________________
consensus CAACAAAAGTT-TTTGTTCCTTCACAATCTACTATGTTATATAGCTTAGAAA-CTATAGT
. : . : . : . : . : . :
rJMSF028D16+ TATTCCTGTAGAAAAAAAGTGTAGTAGGAACTGAAGATC
rJMSF028G15+ TATTCCTGTAGAAAAAAAGTGTAGTAGGAACTGAAGATC
rJMSF006L03+ NATTCCTGTAGAAAAAAAGTGTAGTAGGAACTGAAGATC
rJMSF006L01+ TATTCCTGTAGAAAAAAAGTGTAGTAGGAACTGAAGATCTGGACAC
rJMSF049A04+ TATTCCTGTAGAAAAAAAGTGTAGTAGGAACTGAAGATCTGGACACCATGGAAACAAATC
____________________________________________________________
consensus TATTCCTGTAGAAAAAAAGTGTAGTAGGAACTGAAGATCTGGACACCATGGAAACAAATC