Contig 008655:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF006G09Sequence419008655 (4)ref|XP_009611208.1|6e-51PREDICTED: non-structural maintenance of chromosomes element 4 homolog A-like i
JMSF006G11Sequence266000778 (22)489008655 (4)ref|XP_006362231.1|3e-47PREDICTED: non-structural maintenance of chromosomes element 4 homolog A-like [
JMSF047H18Sequence655008655 (4)ref|XP_009611208.1|1e-75PREDICTED: non-structural maintenance of chromosomes element 4 homolog A-like i756008655 (4)ref|XP_004249168.1|2e-80PREDICTED: non-structural maintenance of chromosomes element 4 homolog A [Solan

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF006G09- GAAACGGTGTAGCAGAGAGTAGCAACGGTAACAGTAACA
JMSF047H18- GAAACGGTGTAGCAGAGAGTAGCAACGGTAACAGTAACA
                      ____________________________________________________________
consensus GAAACGGTGTAGCAGAGAGTAGCAACGGTAACAGTAACA
 
. : . : . : . : . : . :
JMSF006G09- ATGACAGTTCCAGTGAAGAAGACGTTCTCGACCGCAGATTTCTTCGATCTCGATACCTCA
JMSF047H18- ATGACAGTTCCAGTGAAGAAGACGTTCTCGACCGCAGATTTCTTCGATCTCGATACCTCA
                      ____________________________________________________________
consensus ATGACAGTTCCAGTGAAGAAGACGTTCTCGACCGCAGATTTCTTCGATCTCGATACCTCA
 
. : . : . : . : . : . :
JMSF006G09- ACGTTAAGTCTCGGATTTGTGATGAAAAGGATGATCTGTCCAAGGCTGATTCAGATAAGT
JMSF047H18- ACGTTAAGTCTCGGATTTGTGATGAAAAGGATGATCTGTCCAAGGCTGATTCAGATAAGT
                      ____________________________________________________________
consensus ACGTTAAGTCTCGGATTTGTGATGAAAAGGATGATCTGTCCAAGGCTGATTCAGATAAGT
 
. : . : . : . : . : . :
JMSF006G09- TTACATCAATATTTGAAGAAGTTGAAAGGCTGCATGAGAAAGTTCAAAACCCCCGAGAAC
JMSF047H18- TTACATCAATATTTGAAGAAGTTGAAAGGCTGCATGAGAAAGTTCAAAACCCCCGAGAAC
                      ____________________________________________________________
consensus TTACATCAATATTTGAAGAAGTTGAAAGGCTGCATGAGAAAGTTCAAAACCCCCGAGAAC
 
. : . : . : . : . : . :
JMSF006G09- AAGTTGCAGATGCAGAAGCCTTGTTGGACATCACAAACACTTTGGTGACTTCTGTTAAGG
JMSF047H18- AAGTTGCAGATGCAGAAGCCTTGTTGGACATCACAAACACTTTGGTGACTTCTGTTAAGG
                      ____________________________________________________________
consensus AAGTTGCAGATGCAGAAGCCTTGTTGGACATCACAAACACTTTGGTGACTTCTGTTAAGG
 
. : . : . : . : . : . :
JMSF006G09- CGCATAGCAATGAAGGAGTGACTCCTACAGATTTTCTTAGTTGTTTGCTTAGAGAGTTTG
JMSF047H18- CGCATAGCAATGAAGGAGTGACTCCTACAGATTTTCTTAGTTGTTTGCTTAGAGAGTTTG
                      ____________________________________________________________
consensus CGCATAGCAATGAAGGAGTGACTCCTACAGATTTTCTTAGTTGTTTGCTTAGAGAGTTTG
 
. : . : . : . : . : . :
JMSF006G09- GTGATCAAGTAGGCATTAGTTCCAGCACAGATGCGAGTCAGAATTCTATTTGCTGGGAGG
JMSF047H18- GTGATCAAGTAGGCATTAGTTCCAGCACAGATGCGAGTCAGAATTCTATTTGCTGGGAGG
                      ____________________________________________________________
consensus GTGATCAAGTAGGCATTAGTTCCAGCACAGATGCGAGTCAGAATTCTATTTGCTGGGAGG
 
. : . : . : . : . : . :
JMSF006G09- AGGTTGGGTTTGCTGTCTCC
JMSF047H18- AGGTTGGGTTTGCTGTCTCCAATGTTTTCAAGAGTGCTCCTGGATGTTGCACAATGACCG
                      ____________________________________________________________
consensus AGGTTGGGTTTGCTGTCTCCAATGTTTTCAAGAGTGCTCCTGGATGTTGCACAATGACCG
 
. : . : . : . : . : . :
JMSF047H18- GGCCTATGACTTGTGAAGTTAAGCCACGGAAGCCTGTGGTGCAGAGAAAGCGTGTAAGGC
rJMSF047H18+ CACGGAAGCCTGTGGTGCAGAGAAAGCGTGTAAGGC
                      ____________________________________________________________
consensus GGCCTATGACTTGTGAAGTTAAGCCACGGAAGCCTGTGGTGCAGAGAAAGCGTGTAAGGC
 
. : . : . : . : . : . :
JMSF047H18- CAACAGGAAATGAACGTCCAGAAGAGCTTCCAGAAAGTGAAGCTGAAAAGAACACAGACA
rJMSF047H18+ CANCAGGAAATGAACGTCCAGAAGAGCTTCCAGAAAGTGAAGCTGAAAAGAACACAGACA
                      ____________________________________________________________
consensus CAACAGGAAATGAACGTCCAGAAGAGCTTCCAGAAAGTGAAGCTGAAAAGAACACAGACA
 
. : . : . : . : . : . :
JMSF047H18- CAGACCAAAATATGGCAACAATGTTCCAAATCTTAAGGAAGCACCGGAGGGTCAGACTTG
rJMSF047H18+ CAGACAAAAATATGGCAACAATGTTCCAAATCTTAAGGAAGCACCGGAGGGTCAGACTTG
                      ____________________________________________________________
consensus CAGACCAAAATATGGCAACAATGTTCCAAATCTTAAGGAAGCACCGGAGGGTCAGACTTG
 
. : . : . : . : . : . :
JMSF047H18- AAGCTTTGCTGCTGAA
rJMSF047H18+ AAGCTTTGCTGCTGAATAGAAGATCATTTGCACAAACAGTTGAGAATCTATTTGCTCTAT
                      ____________________________________________________________
consensus AAGCTTTGCTGCTGAATAGAAGATCATTTGCACAAACAGTTGAGAATCTATTTGCTCTAT
 
. : . : . : . : . : . :
rJMSF006G11+ CTAGCCAAAGATGGTAGGGCTCAAATAACTGTTGATGATAAGGGCGNTCACACAG
rJMSF047H18+ CTTTTCTAGCCAAAGATGGTAGGGCTCAAATAACTGTTGATGATAAGGGCGTTCACACAG
                      ____________________________________________________________
consensus CTTTTCTAGCCAAAGATGGTAGGGCTCAAATAACTGTTGATGATAAGGGCGTTCACACAG
 
. : . : . : . : . : . :
rJMSF006G11+ NGGGACCAAGGAACGCCCCTTCTGCCAATGCAGTTCTTTCTGGAGAAGTTTCTTACAAAC
rJMSF047H18+ TGGGACCAAGGAACGCCCCTTCTGCCAATGCAGTTCTTTCTGGAGAAGTTTCTTACAAAC
                      ____________________________________________________________
consensus TGGGACCAAGGAACGCCCCTTCTGCCAATGCAGTTCTTTCTGGAGAAGTTTCTTACAAAC
 
. : . : . : . : . : . :
rJMSF006G11+ ATTTTGNTTTCAGATTTNACTTTAANGATTGGAAGCTAATGTTGGCATCTGTTGAGGTTG
rJMSF047H18+ ATTTTGTTTTCAGATTTGACTTTAATGATTGGAAGCTAATGTTGGCATCTGTTGAGGTTG
                      ____________________________________________________________
consensus ATTTTGTTTTCAGATTTGACTTTAATGATTGGAAGCTAATGTTGGCATCTGTTGAGGTTG
 
. : . : . : . : . : . :
rJMSF006G11+ GGGAGGAATTAATGCCTCACAGAAATGAAGATGTCCCGGATACTTTTCANCCAGCANTGA
rJMSF047H18+ GGGAGGAATTAATGCCTCACAGAAATGAAGATGTCCCGGATAATTTTCAACCAGCATTGA
                      ____________________________________________________________
consensus GGGAGGAATTAATGCCTCACAGAAATGAAGATGTCCCGGATACTTTTCAACCAGCATTGA
 
. : . : . : . : . : . :
rJMSF006G11+ CTAATGAAGAAACAACAGAAAGAGGTCCTTCAACCCCAATAAGGAAGTTCTCCAGGAACC
rJMSF047H18+ CTAATGAAGAAACAACAGAAAGAGGTCCTTCAACCCCAATAAGGAAGTTGTCCAGGAACC
                      ____________________________________________________________
consensus CTAATGAAGAAACAACAGAAAGAGGTCCTTCAACCCCAATAAGGAAGTTGTCCAGGAACC
 
. : . : . : . : . : . :
rJMSF006G11+ GAGGCCTGGTTTTGCAGGAGCAGACAGTTGTGGNAGATTCACCCGAAGCTGANGATTCAG
rJMSF047H18+ GAGGCCTGGTTTTGCAGGAGCAGACAGTTGTGGAAGATTCACCCGAAGGTGATGATTCAG
                      ____________________________________________________________
consensus GAGGCCTGGTTTTGCAGGAGCAGACAGTTGTGGAAGATTCACCCGAAGGTGATGATTCAG
 
. : . : . : . : . : . :
rJMSF006G11+ GAGCAAGAGCGGCTGCGATTCGTANGGGGAAGCGGAAACTAGGAATCTGATTCTTCCATA
rJMSF047H18+ GAGCAAGAGCGGCTGCGATTCGTAAGGGGAAGCGGAAACTAGGAATCTGATTCTTCCATA
                      ____________________________________________________________
consensus GAGCAAGAGCGGCTGCGATTCGTAAGGGGAAGCGGAAACTAGGAATCTGATTCTTCCATA
 
. : . : . : . : . : . :
rJMSF006G11+ GAATGTGATTTCGGAATTCCAAGGAAAACTAACTTCGTTGTGA
rJMSF047H18+ GAATGTGATTTAGGAATTCCAAGGAAAACTAACTTCGTTGTGATTTGTATATCCTTTTAG
                      ____________________________________________________________
consensus GAATGTGATTTCGGAATTCCAAGGAAAACTAACTTCGTTGTGATTTGTATATCCTTTTAG
 
. : . : . : . : . : . :
rJMSF047H18+ AATTTCTAAGGAAGGTGTAATGTTTTTTGGTACATCATAGATGTTACTTTCTTGGTAATA
                      ____________________________________________________________
consensus AATTTCTAAGGAAGGTGTAATGTTTTTTGGTACATCATAGATGTTACTTTCTTGGTAATA