| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF035N03 | Sequence | 638 | 008095 (3) | ref|XP_009764879.1| | 4e-92 | PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase isoform X1 [Nicotiana sy | 711 | 008653 (3) | emb|CBI25424.3| | 3e-51 | unnamed protein product [Vitis vinifera] |
| JMSF047F13 | Sequence | 568 | 008095 (3) | ref|XP_009764879.1| | 1e-64 | PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase isoform X1 [Nicotiana sy | 798 | 008653 (3) | emb|CBI25424.3| | 1e-51 | unnamed protein product [Vitis vinifera] |
| JMSF050P04 | Sequence | 436 | 008095 (3) | ref|XP_009764879.1| | 4e-28 | PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase isoform X1 [Nicotiana sy | 444 | 008653 (3) | ref|XP_010658222.1| | 1e-19 | PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase isoform X2 [Vitis vinife |
This contig is upended
. : . : . : . : . : . :
rJMSF035N03+ GAAAAA
rJMSF047F13+ GTCTGCATCCAACGAGAAAAA
____________________________________________________________
consensus GTCTGCATCCAACGAGAAAAA
. : . : . : . : . : . :
rJMSF035N03+ GTCAGTATTGNTAGCATCTAGCAGCGATCCCTTGCACACATACGACCA-TTAGCAAGTCA
rJMSF047F13+ GTCAGTATTGNTAGCATCTAGCAGCGATCCCTTGCACACATACGACCATTTAGCAAGTCA
____________________________________________________________
consensus GTCAGTATTGNTAGCATCTAGCAGCGATCCCTTGCACACATACGACCATTTAGCAAGTCA
. : . : . : . : . : . :
rJMSF035N03+ CTTNGACAGCGTTATCATGCCCCACCAAGTCACAAAGCATGGAGCAAAACCGGGATGGGT
rJMSF047F13+ CTT-GACAGCGTTATCATGCCCCACCAAGTCACAAAGCATGGAGCAAAACCGGGATGGGT
____________________________________________________________
consensus CTTNGACAGCGTTATCATGCCCCACCAAGTCACAAAGCATGGAGCAAAACCGGGATGGGT
. : . : . : . : . : . :
rJMSF035N03+ TGTACAAGAAAGTTCTATAGCGATGGATGGATACACATTAACAGAAATCGGTGCCACGTG
rJMSF047F13+ TGTACAAGAAAGTTCTATAGCGATGGATGGATACACATTAACAGAAATCGGTGCCACGTG
____________________________________________________________
consensus TGTACAAGAAAGTTCTATAGCGATGGATGGATACACATTAACAGAAATCGGTGCCACGTG
. : . : . : . : . : . :
rJMSF035N03+ TTATAAGCTCAAGACTGAACCTACTTCTGAGCCTGAACAGACAACATCCTCTTCTGGTTC
rJMSF047F13+ TTATAAGCTCAAGACTGAACCTACTTCTGAGCCTGAACAGACAACATCCTCTTCTGGTTC
____________________________________________________________
consensus TTATAAGCTCAAGACTGAACCTACTTCTGAGCCTGAACAGACAACATCCTCTTCTGGTTC
. : . : . : . : . : . :
rJMSF035N03+ ATCAGACTACCATGCAGTTCTTGGGCACATTGCAGTCAGAACTCCTGAAACGAACCCGAT
rJMSF047F13+ ATCAGACTACCATGCAGTTCTTGGGCACATTGCAGTCAGAACTCCTGAAACGAACCCGAT
____________________________________________________________
consensus ATCAGACTACCATGCAGTTCTTGGGCACATTGCAGTCAGAACTCCTGAAACGAACCCGAT
. : . : . : . : . : . :
rJMSF035N03+ CTTACCACCCGCGAATTCATGGCTCATTGATAGCAGATATGTTGCATGGTCTTCAGGCTC
rJMSF050P04+ GAATTCATGGCTCATTGATAGCAGATATGTTGCATGGTCTTCAGGCTC
rJMSF047F13+ CTTACCACCCGCGAATTCATGGCTCATTGATAGCAGATATGTTGCATGGTCTTCAGGCTC
____________________________________________________________
consensus CTTACCACCCGCGAATTCATGGCTCATTGATAGCAGATATGTTGCATGGTCTTCAGGCTC
. : . : . : . : . : . :
rJMSF035N03+ AAGGAAACTCAGTTTGATGCTTACGTGGCAACTGAAAAATGGGAATGCTGATCTGTCCAT
rJMSF050P04+ AAGGNAACTCAGTNTGATGCTTNCGTGGCANCTGAAAAATGGGAATGCTGATCTGTCCAT
rJMSF047F13+ AAGGAAACTCAGTTTGATGCTTACGTGGCAACTGAAAAATGGGAATGCTGATCTGTCCAT
____________________________________________________________
consensus AAGGAAACTCAGTTTGATGCTTACGTGGCAACTGAAAAATGGGAATGCTGATCTGTCCAT
. : . : . : . : . : . :
rJMSF035N03+ GCAGTACAACATACATGTCCAGAAAGTAACCAAATCCTCAAATGAAGAACTCAACAATGG
rJMSF050P04+ GCAGTNCAACATACATGTCCAGAAAGTAACCAAATCCTCAAATGANGAACTCAACAATGG
rJMSF047F13+ GCAGTACAACATACATGTCCAGAAAGTAACCAAATCCTCAAATGAAGAACTCAACAATGG
____________________________________________________________
consensus GCAGTACAACATACATGTCCAGAAAGTAACCAAATCCTCAAATGAAGAACTCAACAATGG
. : . : . : . : . : . :
rJMSF035N03+ GGTTAGAGGAGCCCAGTTTCTTGGAGCTGCAATGGTTGAGGCCTTTTATATCTCTGATCT
rJMSF050P04+ GGTTAGAGGAGCCCAGTTTCTTGGAGCTGCAATGGTTGAGGCCTNTNATATCTCTGATNT
rJMSF047F13+ GGTTAGAGGAGCCCAGTTTCTTGGAGCTGCAATGGTTGAGGCCTTTTATATCTCTGATCT
____________________________________________________________
consensus GGTTAGAGGAGCCCAGTTTCTTGGAGCTGCAATGGTTGAGGCCTTTTATATCTCTGATCT
. : . : . : . : . : . :
rJMSF035N03+ GGAGATTCCAGATGGAACATCCACTCTCAAATTCATCATCCAAGTCACCATTGATGGAAT
rJMSF050P04+ GGAGATTCCAGATGGAACATCCACTCTCAAATTCATCATCCAAGTCACCATTGATGGAAT
rJMSF047F13+ GGAGATTCCAGATGGAACATCCACTCTCAAATTCATCATCCAAGTCACCATTGATGGAAT
____________________________________________________________
consensus GGAGATTCCAGATGGAACATCCACTCTCAAATTCATCATCCAAGTCACCATTGATGGAAT
. : . : . : . : . : . :
rJMSF035N03+ TTCCCAGAAGCTAGAAGATTCTCCATCTTATCAGCTGAATGTTCAACA-AGATTCATAAT
rJMSF050P04+ TTCCCAGAAGCTAGAAGATTCTCCATCTTATCAGNNGAATGTTCAACACAGATTCATAAN
rJMSF047F13+ TTCCCAGAAGCTAGAAGATTCTCCATCTTATCAGCTGAATGTTCAACA-AGATTCATAAT
____________________________________________________________
consensus TTCCCAGAAGCTAGAAGATTCTCCATCTTATCAGCTGAATGTTCAACA-AGATTCATAAT
. : . : . : . : . : . :
rJMSF035N03+ ATCAGTATA-CTGCATTTCATGATATAACATCTTTCCTGTCAATTTA
rJMSF050P04+ ATCAGTCTAGCTGCATTTCATGATATAACATCTTTCCNGTCAATTTANGTATACNTAAAA
rJMSF047F13+ ATCAGTATA-CTGCATTTCATGATATAACATCTTTCCTGTCAATTTATGTATACCTAAAA
____________________________________________________________
consensus ATCAGTATA-CTGCATTTCATGATATAACATCTTTCCTGTCAATTTATGTATACCTAAAA
. : . : . : . : . : . :
rJMSF050P04+ TAAAAACAAAAAGAAATGTTTNTAGATTTCTATCCC
rJMSF047F13+ TAAAAACAAAAAGAAATGTTTTTAGATTTCTATCCCTTTTCAAGGGTTTTAGGAATAGGG
____________________________________________________________
consensus TAAAAACAAAAAGAAATGTTTTTAGATTTCTATCCCTTTTCAAGGGTTTTAGGAATAGGG