Contig 008649:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF040B10Sequence677014734ref|XP_009593878.1|9e-60PREDICTED: mediator of RNA polymerase II transcription subunit 34-like isoform 840008649 (2)ref|XP_009592936.1|4e-101PREDICTED: mediator of RNA polymerase II transcription subunit 34-like, partial
JMSF046N13Sequence106017942754008649 (2)ref|XP_006355238.1|1e-55PREDICTED: mediator of RNA polymerase II transcription subunit 34-like [Solanum

Alignment

This contig is upended


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rJMSF040B10+                                          AAAGAGAGTGTCGCCGAAGTGCCTTCTT
                      ____________________________________________________________
consensus                                             AAAGAGAGTGTCGCCGAAGTGCCTTCTT
 
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rJMSF040B10+          CCGGCATTTTGCTGAAGCTTTACAAGAATGCAATGGAATGTGTGACAACTGTGCTTTCTC
                      ____________________________________________________________
consensus             CCGGCATTTTGCTGAAGCTTTACAAGAATGCAATGGAATGTGTGACAACTGTGCTTTCTC
 
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rJMSF040B10+          ATGTGAGGTGAAAGAATTGGATGTCTCTGGTCATGCAAAACTTATTGTTTCTTTTGTGCA
                      ____________________________________________________________
consensus             ATGTGAGGTGAAAGAATTGGATGTCTCTGGTCATGCAAAACTTATTGTTTCTTTTGTGCA
 
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rJMSF040B10+          AGAAGTGCAAGAAACAGATAAGAGGGTGACAATGTTGCAATTGGTGGAAAAAGTTAAGGG
rJMSF046N13+                                                               TTAAGGG
                      ____________________________________________________________
consensus             AGAAGTGCAAGAAACAGATAAGAGGGTGACAATGTTGCAATTGGTGGAAAAAGTTAAGGG
 
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rJMSF040B10+          TTTGCTCAATGGTATAGATCCCGAGCTAAAAAGAGATGAGCTGGAGCAAGTTGTCATTCA
rJMSF046N13+          TTTGCTCAATGGTATAGATCCCGAGCTAAAAAGAGATGAGCTGGAGCAAGTTGTCATTCA
                      ____________________________________________________________
consensus             TTTGCTCAATGGTATAGATCCCGAGCTAAAAAGAGATGAGCTGGAGCAAGTTGTCATTCA
 
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rJMSF040B10+          GCTTATAGTAGACCATGTTTTGAAAGAAGAATTTCAGCATACTGCTTATGCTACGAATGC
rJMSF046N13+          GCTTATAGTAGACCATGTTTTGAAAGAAGAATTTCAGCATACTGCTTATGCTACGAATGC
                      ____________________________________________________________
consensus             GCTTATAGTAGACCATGTTTTGAAAGAAGAATTTCAGCATACTGCTTATGCTACGAATGC
 
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rJMSF040B10+          TTATGTGACAGTAGGAGCACTTGCAAAGCAATTATTGCAAGGGAAGAAAGTTATTAAGCT
rJMSF046N13+          TTATGTGACAGTAGGAGCACTTGCAAAGCAATTATTGCAAGGGAAGAAAGTTATTAAGCT
                      ____________________________________________________________
consensus             TTATGTGACAGTAGGAGCACTTGCAAAGCAATTATTGCAAGGGAAGAAAGTTATTAAGCT
 
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rJMSF040B10+          TGAAGTTTGTAATAAACAAGTGGGTAGCTCAAGTTTCATAAAATCATCCAAAAGAAGCAG
rJMSF046N13+          TGAAGTTTGTAATAAACAAGTGGGTAGCTCAAGTTTCATAAAATCATCCAAAAGAAGCAG
                      ____________________________________________________________
consensus             TGAAGTTTGTAATAAACAAGTGGGTAGCTCAAGTTTCATAAAATCATCCAAAAGAAGCAG
 
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rJMSF040B10+          ATCTTCTGGATTGGAATCTATGCTTGATGAACTACGAAAGGAACTCGCTGCCATCCATGG
rJMSF046N13+          ATCTTCTGGATTGGAATCTATGCTTGATGAACTACGAAAGGAACTCGCTGCCATCCATGG
                      ____________________________________________________________
consensus             ATCTTCTGGATTGGAATCTATGCTTGATGAACTACGAAAGGAACTCGCTGCCATCCATGG
 
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rJMSF040B10+          GTCAATGTTTCCACACTCTGTATTATCAACGCAACAGATCTGCACTATTAGTATGCAGAA
rJMSF046N13+          GTCAATGTTTCCACACTCTGTATTATCAACGCAACAGATCTGCACTATTAGTATGCAGAA
                      ____________________________________________________________
consensus             GTCAATGTTTCCACACTCTGTATTATCAACGCAACAGATCTGCACTATTAGTATGCAGAA
 
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rJMSF040B10+          ACCCGATTCAGTGGAAGAGCTGGAGAAGATAATTGGAAAATTGAAGGTTGAGAAATATGG
rJMSF046N13+          ACCCGATTCAGTGGAAGAGCTGGAGAAGATAATTGGAAAATTGAAGGTTGAGAAATATGG
                      ____________________________________________________________
consensus             ACCCGATTCAGTGGAAGAGCTGGAGAAGATAATTGGAAAATTGAAGGTTGAGAAATATGG
 
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rJMSF040B10+          AAGCAGAATTCTTCAAGAAATAAAAAGTTACGAGTCCAAGCCTGAAGCTGTGGAAAGTGT
rJMSF046N13+          AAGCAGAATTCTTCAAGAAATAAAAAGTTACGAGTCCAAGCCTGAAGCTGTGGAAAGTGT
                      ____________________________________________________________
consensus             AAGCAGAATTCTTCAAGAAATAAAAAGTTACGAGTCCAAGCCTGAAGCTGTGGAAAGTGT
 
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rJMSF040B10+          AGATGGTGAAGAGGGTGCTTCAAAAAAATTGAAAAGTAGAAAAAAAGCTTTAGTAGTCAT
rJMSF046N13+          AGATGGTGAAGAGGGTGCTTCAAAAAAATTGAAAAGTAGAAAAAAAGCTTTAGTAGTCAT
                      ____________________________________________________________
consensus             AGATGGTGAAGAGGGTGCTTCAAAAAAATTGAAAAGTAGAAAAAAAGCTTTAGTAGTCAT
 
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rJMSF040B10+          TGAGAGCAGTGAAGAAGAGTGAGGGAAAATAGAGTTTTAAAAGCAAAGCTACATGCACTA
rJMSF046N13+          TGAGAGCAGTGAAGAAGAGTGAGGGAAAATAGAGTTTTAAAAGCAAAGCTACATGCACTA
                      ____________________________________________________________
consensus             TGAGAGCAGTGAAGAAGAGTGAGGGAAAATAGAGTTTTAAAAGCAAAGCTACATGCACTA
 
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rJMSF040B10+          CAAACCAAACATCTCTGTGTATCAGTATCTAC                            
rJMSF046N13+          CAAACCAAACATCTCTGTGTATCAGTATCTACTTTGACTCTTTTGCTAGTGATTATTGAA
                      ____________________________________________________________
consensus             CAAACCAAACATCTCTGTGTATCAGTATCTACTTTGACTCTTTTGCTAGTGATTATTGAA
 
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rJMSF046N13+          TTCTACTTGACCTTGTAATGATCTCTCAAAAACCAAAAACAAAACACGCATACTTTATTT
                      ____________________________________________________________
consensus             TTCTACTTGACCTTGTAATGATCTCTCAAAAACCAAAAACAAAACACGCATACTTTATTT