clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF020D19 | Sequence | 651 | 024165 | ref|XP_006348243.1| | 2e-71 | PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial | 704 | 008629 (2) | ref|XP_004244223.1| | 5e-69 | PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial |
JMSF043C16 | Sequence | 774 | 019004 | ref|XP_006348243.1| | 4e-18 | PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial | 725 | 008629 (2) | ref|XP_004244223.1| | 1e-53 | PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial |
This contig is upended
. : . : . : . : . : . :
rJMSF020D19+ TCGGGA
rJMSF043C16+ CTCGGGA
____________________________________________________________
consensus CTCGGGA
. : . : . : . : . : . :
rJMSF020D19+ ATGTGGAGGAGATGTGGAGATTATGGGGTGAACAAAAAACCGTATGCAAAAAACATATTA
rJMSF043C16+ ATGTGGAGGAGATGTGGAGATTATGGGGTGAACAAAAAACCGTATGCAAAAAACATATTA
____________________________________________________________
consensus ATGTGGAGGAGATGTGGAGATTATGGGGTGAACAAAAAACCGTATGCAAAAAACATATTA
. : . : . : . : . : . :
rJMSF020D19+ ACAGAGACTATATCACCATGTTGGGTTGCTTGGTGAAGCTTGGTGAGCTCGAAACAGCCG
rJMSF043C16+ ACAGAGACTATATCACCATGTTGGGTTGCTTGGTGAAGCTTGGTGAGCTCGAAACAGCCG
____________________________________________________________
consensus ACAGAGACTATATCACCATGTTGGGTTGCTTGGTGAAGCTTGGTGAGCTCGAAACAGCCG
. : . : . : . : . : . :
rJMSF020D19+ AGAGACTGCTAATGGTGTGGGATTCTTCCTGCCACACCTATGATTTCAGGGTTCCGAATA
rJMSF043C16+ AGAGACTGCTAATGGTGTGGGATTCTTCCTGCCACACCTATGATTTCAGGGTTCCGAATA
____________________________________________________________
consensus AGAGACTGCTAATGGTGTGGGATTCTTCCTGCCACACCTATGATTTCAGGGTTCCGAATA
. : . : . : . : . : . :
rJMSF020D19+ CTCTTCTGATTGGTTACTGCCAGAAGGGA-TTAGTTGAGAAAGCGGAGGAAATGCTCCTC
rJMSF043C16+ CTCTTNTGATTGGTTACTGCCAGAAGGGATTTAGTTGAGAAAGCGGAGGAAATGCTCCTC
____________________________________________________________
consensus CTCTTCTGATTGGTTACTGCCAGAAGGGATTTAGTTGAGAAAGCGGAGGAAATGCTCCTC
. : . : . : . : . : . :
rJMSF020D19+ GATCTGGTCAAGAAAGGCAAGCAGCCAACCCCGAACAGTTGGGCTATAATCACGGCNGGC
rJMSF043C16+ GATCTGGTCAAGAAAGGCAAGCAGCCAACCCCGAACAGTTGGGCTATAATCACGGCAGGC
____________________________________________________________
consensus GATCTGGTCAAGAAAGGCAAGCAGCCAACCCCGAACAGTTGGGCTATAATCACGGCAGGC
. : . : . : . : . : . :
rJMSF020D19+ TACATGGGCAGGGGCAGCATGGACAAAGCTTTTGAATGCATGAAGAAAGCTGTATCAGTA
rJMSF043C16+ TACATGGGCAGGGGCAGCATGGACAAAGCTTTTGAATGCATGAAGAAAGCTGTATCAGTA
____________________________________________________________
consensus TACATGGGCAGGGGCAGCATGGACAAAGCTTTTGAATGCATGAAGAAAGCTGTATCAGTA
. : . : . : . : . : . :
rJMSF020D19+ AGTCAAAACAACAAAGGGTGGAGGCCAAAAAAGGAAGTGGTTTCAACCATAGTCAATTGG
rJMSF043C16+ AGTCAAAACAACAAAGGGTGGAGGCCAAAAAAGGAAGTGGTTTCAACCATAGTCAATTGG
____________________________________________________________
consensus AGTCAAAACAACAAAGGGTGGAGGCCAAAAAAGGAAGTGGTTTCAACCATAGTCAATTGG
. : . : . : . : . : . :
rJMSF020D19+ CTTCAAGATCAACAGAGGGTTAGAGAGTTAGATGCTTTCATGATGGCATTAGATAGGGTT
rJMSF043C16+ CTTCAAGATCAACAGAGGGTTAGAGAGTTAGATGCTTTCATGATGGCATTAGATAGGGTT
____________________________________________________________
consensus CTTCAAGATCAACAGAGGGTTAGAGAGTTAGATGCTTTCATGATGGCATTAGATAGGGTT
. : . : . : . : . : . :
rJMSF020D19+ CCAAGATATAGCAACATCTCCAGCAGAGTAAAAGGCCACAGGGTTTACCCAGTGCACAAC
rJMSF043C16+ CCAAGATATAGCAACATCTCCAGCAGAGTAAAAGGCCACAGGGTTTACCCAGTGCACAAC
____________________________________________________________
consensus CCAAGATATAGCAACATCTCCAGCAGAGTAAAAGGCCACAGGGTTTACCCAGTGCACAAC
. : . : . : . : . : . :
rJMSF020D19+ TTCGGTTAGTGGTTGCGATTTTCCCTTGTCACCCAACAAAAAAAAAGAGCCAAGAAATGA
rJMSF043C16+ TTCGGTTAGTGGTTGCGATTTTCCCTTGTCACCCAACAAAAAAAAAGAGCCAAGAAATGA
____________________________________________________________
consensus TTCGGTTAGTGGTTGCGATTTTCCCTTGTCACCCAACAAAAAAAAAGAGCCAAGAAATGA
. : . : . : . : . : . :
rJMSF020D19+ GACAGTAATTTGTTTGTGTAGCTTTGAATTTTTCTCAGTTTTTGCCTTTACTGTTCCTTG
rJMSF043C16+ GACAGTAATTTGTTTGTGTAGCTTTGAATTTTTCTCAGTTTTTGCCTTTACTGTTCCTTG
____________________________________________________________
consensus GACAGTAATTTGTTTGTGTAGCTTTGAATTTTTCTCAGTTTTTGCCTTTACTGTTCCTTG
. : . : . : . : . : . :
rJMSF020D19+ TACCACCATGCCAGTTTAGTTGCTTCAGATTCAAAGAAT
rJMSF043C16+ TACA--CATGCCAGTTTAGTTGCTTCAGATTCAAAGAATGAAGTTGCTTAAAATAATGAT
____________________________________________________________
consensus TACCACCATGCCAGTTTAGTTGCTTCAGATTCAAAGAATGAAGTTGCTTAAAATAATGAT