Contig 008601:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF032J08Sequence688006509 (8)ref|NP_001234474.1|4e-47verticillium wilt disease resistance protein precursor [Solanum lycopersicum] g601008601 (2)gb|AAY42203.1|6e-22verticillium wilt disease resistance protein [Solanum torvum]
JMSF038C10Sequence656006509 (8)ref|NP_001234474.1|3e-47verticillium wilt disease resistance protein precursor [Solanum lycopersicum] g598008601 (2)gb|AAY42203.1|2e-19verticillium wilt disease resistance protein [Solanum torvum]

Alignment

This contig is upended


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rJMSF032J08+                                                                   CCA
                      ____________________________________________________________
consensus                                                                      CCA
 
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rJMSF032J08+          GTACAGTAGTACTTCCAAAATTNTTAGCCAATTTCTCAAACCTCAAGACCTTGAGCCTCA
rJMSF038C10+               GTAGNACTTCCAAAATTTTTAGCCAATTTNTCAAACCTCAAGNCCCTGNGCCTCN
                      ____________________________________________________________
consensus             GTACAGTAGTACTTCCAAAATTTTTAGCCAATTTCTCAAACCTCAAGACCTTGAGCCTCA
 
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rJMSF032J08+          GNTTTTGTAATNTACAGGGNTCNTTTCCTAGNGAGATATTTTTGATACNTGGNTTACNGG
rJMSF038C10+          GNTTTTGTAATNTACNGGGNTCNTTTCCNAGNGNGATATTTTTGATACNTGGNTTACNGG
                      ____________________________________________________________
consensus             GNTTTTGTAATNTACAGGGNTCNTTTCCTAGNGAGATATTTTTGATACNTGGNTTACNGG
 
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rJMSF032J08+          AATTGAATTTGAAACNCAATTATGATNTTAGNGGNGGNTTCCCATCNTTTCCCGNGAANG
rJMSF038C10+          AANTGAATTTGAAACNCAATTATGATTTTAGNGGGGGNTTCCCNTCNTTTCCCGNGAANG
                      ____________________________________________________________
consensus             AATTGAATTTGAAACNCAATTATGATTTTAGNGGGGGNTTCCCATCNTTTCCCGNGAANG
 
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rJMSF032J08+          GNTCNCTTAGGATGATNTCNGTAGNTGACNCTCAATTTTNTGGNTCATTGCCAGCATCCN
rJMSF038C10+          GNTCNCTTAGGNTGATNTCNGNAGNTGNCNCTCAATTTTTTGGNTCNTTGCCNGCNTCCC
                      ____________________________________________________________
consensus             GNTCNCTTAGGATGATNTCNGTAGNTGACNCTCAATTTTTTGGNTCATTGCCAGCATCCC
 
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rJMSF032J08+          TTAGTAATNTTAGCAACTTGTNTAGGNTCGATNTCAGCAACTGCAGNTTCAGNGGNTCAA
rJMSF038C10+          TTNGTAATTTTAGCAACTTGTNTAGGNTCGNTTTCAGCAANTGCNGNTTCNGNGGNTCAA
                      ____________________________________________________________
consensus             TTAGTAATTTTAGCAACTTGTNTAGGNTCGATTTCAGCAACTGCAGNTTCAGNGGNTCAA
 
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rJMSF032J08+          TTCCTTNTACCNTGGCNCAACTTACGAGTNTCNCTTATGNGGNTTTNTNGNATAACCNCT
rJMSF038C10+          TTCCTTTTACCNTGGCNCAACTTNCGNGTNTCNCTTATGNGGNTTTNTNGNATAACCNCT
                      ____________________________________________________________
consensus             TTCCTTTTACCNTGGCNCAACTTACGAGTNTCNCTTATGNGGNTTTNTNGNATAACCNCT
 
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rJMSF032J08+          TCNCTGGNTCAGTCCCAAATTTTCAAAGTTCAAAGCNTCCCAAAATNTCCAAGACCNGGA
rJMSF038C10+          TCNCTGGNTCNGTCCCAAATTTTCAAAGTTCAAAGCNTCCCAAAATNTCCNAGNCCCGGN
                      ____________________________________________________________
consensus             TCNCTGGNTCAGTCCCAAATTTTCAAAGTTCAAAGCNTCCCAAAATNTCCAAGACCCGGA
 
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rJMSF032J08+          TGCNGAGTTCGCNGGAACTGATTNTGATAACTNTAAGCTTCAACCNTCNGGTATGAATGC
rJMSF038C10+          TGCNGNGTTCGCNGGAACTGATTTTGATAACTNTAAGNTTCAACCNTCNGGNATGAATGC
                      ____________________________________________________________
consensus             TGCNGAGTTCGCNGGAACTGATTTTGATAACTNTAAGCTTCAACCNTCNGGTATGAATGC
 
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rJMSF032J08+          TGAGATCNGNGATTATGGNGGNGATACCNCNCNTTGCGNGC-NTTTTTTTTTTTGTGTGT
rJMSF038C10+          TGNGATCNGNGNTTATGGNGGNGATACCNCNCCTTGCGNGCNTTTTTTTTTTTTGTGTGT
                      ____________________________________________________________
consensus             TGAGATCNGNGATTATGGNGGNGATACCNCNCCTTGCGNGCNTTTTTTTTTTTTGTGTGT
 
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rJMSF032J08+          GTGTTATTATCATCTGGACAATATTTAAGTGTAATAACTTT                   
rJMSF038C10+          GTGTTATTATCATCTGGACAATATTTAAGTGTAATAACTTTTAAAGGTGTTGCATGTTTT
                      ____________________________________________________________
consensus             GTGTTATTATCATCTGGACAATATTTAAGTGTAATAACTTTTAAAGGTGTTGCATGTTTT