Contig 008600:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF038B23Sequence714008600 (2)gb|KJB58961.1|5e-74hypothetical protein B456_009G232500 [Gossypium raimondii]855008600 (2)gb|EYU34538.1|2e-32hypothetical protein MIMGU_mgv1a019697mg, partial [Erythranthe guttata]

Alignment

This contig is upended


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JMSF038B23-                                                                    GAA
                      ____________________________________________________________
consensus                                                                      GAA
 
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JMSF038B23-           AATTGAAGTTAAAAATGGAAGTATCTGAAGGGAAGGGAAATATGAGGGGGAGACTATTCC
                      ____________________________________________________________
consensus             AATTGAAGTTAAAAATGGAAGTATCTGAAGGGAAGGGAAATATGAGGGGGAGACTATTCC
 
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JMSF038B23-           TCCTCCTCAGCGCCATTATGATGTGCATCGGCGGCTGCGGCGGCGCTCTCCTCCTTCGAC
                      ____________________________________________________________
consensus             TCCTCCTCAGCGCCATTATGATGTGCATCGGCGGCTGCGGCGGCGCTCTCCTCCTTCGAC
 
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JMSF038B23-           TCTACTTCATCCGCGGCGGCAACAGATTATGGTTCTCCACTTGTCTTTCCACAGCCGGAT
                      ____________________________________________________________
consensus             TCTACTTCATCCGCGGCGGCAACAGATTATGGTTCTCCACTTGTCTTTCCACAGCCGGAT
 
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JMSF038B23-           GGCCCATCAACTTCATCCCACTCGCGGCAGCCTACTACACGCGCCGCCGTCACACAACAA
                      ____________________________________________________________
consensus             GGCCCATCAACTTCATCCCACTCGCGGCAGCCTACTACACGCGCCGCCGTCACACAACAA
 
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JMSF038B23-           CAACCGCTGCAAGCATTTTCACGATTACTCGAAACACATTTTTGGCCGCGGCGGCGCTGG
                      ____________________________________________________________
consensus             CAACCGCTGCAAGCATTTTCACGATTACTCGAAACACATTTTTGGCCGCGGCGGCGCTGG
 
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JMSF038B23-           GCGTCCTGCTCGGCATAATCAACTACCTCTACACCTACGGCGTCTCGAAGCTCCCCGTCT
                      ____________________________________________________________
consensus             GCGTCCTGCTCGGCATAATCAACTACCTCTACACCTACGGCGTCTCGAAGCTCCCCGTCT
 
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JMSF038B23-           CCACATCCGCTCTCATCGCCGCCTCCCAGCTGGCATTCACCGCCGGCGGCGCATTCCTCC
                      ____________________________________________________________
consensus             CCACATCCGCTCTCATCGCCGCCTCCCAGCTGGCATTCACCGCCGGCGGCGCATTCCTCC
 
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JMSF038B23-           TGGTGAAGCAGCGCTTCACGGCGTTCTCGGTGAACGCGGTGGTGCTGTTGACCTTCGGAG
                      ____________________________________________________________
consensus             TGGTGAAGCAGCGCTTCACGGCGTTCTCGGTGAACGCGGTGGTGCTGTTGACCTTCGGAG
 
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JMSF038B23-           CCGGGGTGCTGGCTGTGGGGTCCAACGGAGACCGCCCCGCCGGGGAGTCGAAAAAGGAGT
rJMSF038B23+                                                       AGTCGAAAAAGGAGT
                      ____________________________________________________________
consensus             CCGGGGTGCTGGCTGTGGGGTCCAACGGAGACCGCCCCGCCGGGGAGTCGAAAAAGGAGT
 
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JMSF038B23-           ACGTGGCAGCGTTTCTGATGACCCTTGCATCGGCGGCTTTGTACGGGGCTCTTCTGCCGT
rJMSF038B23+          ACGTGGCAGCGTTTCTGATGACCCTTGCATCGGCGGCTTTGTACGGGGCTCTTCTGCCGT
                      ____________________________________________________________
consensus             ACGTGGCAGCGTTTCTGATGACCCTTGCATCGGCGGCTTTGTACGGGGCTCTTCTGCCGT
 
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JMSF038B23-           GTATAGAGTTGACTTACATCAAAGGAAGACAGTCTTTAACCTATACTTTGGTTTTGGAGT
rJMSF038B23+          GTATAGAGTTGACTTACATCAAAGGAAGACAGTCTTTAACCTATACTTTGGTTTTGGAGT
                      ____________________________________________________________
consensus             GTATAGAGTTGACTTACATCAAAGGAAGACAGTCTTTAACCTATACTTTGGTTTTGGAGT
 
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JMSF038B23-           TTCAGATGGTTATGTCCCTCTTTGCCACTGCTTTTTGTACCGTTGGAATGC         
rJMSF038B23+          TTCAGATGGTTATGTCCCTCTTTGCCACTGCTTTTTGTACCGTTGGAATGCTGGTAAACA
                      ____________________________________________________________
consensus             TTCAGATGGTTATGTCCCTCTTTGCCACTGCTTTTTGTACCGTTGGAATGCTGGTAAACA
 
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rJMSF038B23+          AAGATTTTCAGGTAAACAAAATCTACTTTCATTTACCATGGTAATATATATGTTGAGCAT
                      ____________________________________________________________
consensus             AAGATTTTCAGGTAAACAAAATCTACTTTCATTTACCATGGTAATATATATGTTGAGCAT
 
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rJMSF038B23+          ATAACCATTAATATGCAGTCCAATTATATCAGCTTTGACTTTTAGTTGAGATGGAGCACA
                      ____________________________________________________________
consensus             ATAACCATTAATATGCAGTCCAATTATATCAGCTTTGACTTTTAGTTGAGATGGAGCACA
 
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rJMSF038B23+          TGCTTCAATCTAGTATTAAAGCCATGCCAAAGGTCATGTAGTCGAATCTGGCAACAGCGT
                      ____________________________________________________________
consensus             TGCTTCAATCTAGTATTAAAGCCATGCCAAAGGTCATGTAGTCGAATCTGGCAACAGCGT
 
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rJMSF038B23+          GGAATTTCCCTATAACTTGCATGCTAAGTATATAAATATATATATCACAACAATGGTGCA
                      ____________________________________________________________
consensus             GGAATTTCCCTATAACTTGCATGCTAAGTATATAAATATATATATCACAACAATGGTGCA
 
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rJMSF038B23+          GGCAATTTCTAGGGAAGCCAGAGGATTTGAGATAGGAGAAGCAAATTACTATGTGGTTGT
                      ____________________________________________________________
consensus             GGCAATTTCTAGGGAAGCCAGAGGATTTGAGATAGGAGAAGCAAATTACTATGTGGTTGT
 
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rJMSF038B23+          AGTGGTCACTGCCCTTATTTGGCAGATATTATTCATCGGAGCCGCCGGAAGTATCTGCTA
                      ____________________________________________________________
consensus             AGTGGTCACTGCCCTTATTTGGCAGATATTATTCATCGGAGCCGCCGGAAGTATCTGCTA
 
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rJMSF038B23+          CGGATCGTCTTTGCTCTCTGGCATTATCCTCGCTGCAACAATATCTCTGACGGAGGTATT
                      ____________________________________________________________
consensus             CGGATCGTCTTTGCTCTCTGGCATTATCCTCGCTGCAACAATATCTCTGACGGAGGTATT
 
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rJMSF038B23+          TGCGGTGGTATTTTACGGTGAGTAATTTGGATCGGAAAAGGGGATTTCATTGACGCTTTC
                      ____________________________________________________________
consensus             TGCGGTGGTATTTTACGGTGAGTAATTTGGATCGGAAAAGGGGATTTCATTGACGCTTTC
 
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rJMSF038B23+          GCTGTGGGGAATTGTATCTTACTTCTATGGAGAAATGAAGAATGGTGATAATAATAAGAA
                      ____________________________________________________________
consensus             GCTGTGGGGAATTGTATCTTACTTCTATGGAGAAATGAAGAATGGTGATAATAATAAGAA
 
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rJMSF038B23+          AGAGGAACTTCAGATTCAAGTGACTAATATGGAACCAAATGAAACTCTTCCTATGTAACA
                      ____________________________________________________________
consensus             AGAGGAACTTCAGATTCAAGTGACTAATATGGAACCAAATGAAACTCTTCCTATGTAACA
 
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rJMSF038B23+          TTCTATTGCTCCATCTACATCTACATACAAATCTAATAAGAGCCAATATAGTTAAGCTCC
                      ____________________________________________________________
consensus             TTCTATTGCTCCATCTACATCTACATACAAATCTAATAAGAGCCAATATAGTTAAGCTCC