clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF030A19 | Sequence | 546 | 003187 (3) | ref|XP_006368926.1| | 6e-07 | hypothetical protein POPTR_0001s14920g [Populus trichocarpa] gb|ERP65495.1| hypo | 741 | 008561 (2) | gb|EYU33527.1| | 4e-35 | hypothetical protein MIMGU_mgv1a020659mg, partial [Erythranthe guttata] |
JMSF047N03 | Sequence | 668 | 003187 (3) | ref|XP_009608055.1| | 9e-14 | PREDICTED: UPF0481 protein At3g47200-like [Nicotiana tomentosiformis] | 722 | 008561 (2) | gb|EYU33527.1| | 6e-35 | hypothetical protein MIMGU_mgv1a020659mg, partial [Erythranthe guttata] |
This contig is upended
. : . : . : . : . : . :
rJMSF047N03+ GGGAA
rJMSF030A19+ TCCCAAGCCGCNAAANGGGAA
____________________________________________________________
consensus TCCCAAGCCGCNAAANGGGAA
. : . : . : . : . : . :
rJMSF047N03+ TGAAGAAAATATGTGGCTAAAATTAAACCATATGAACAGTGCCACAGAGCTTAAAGAGGT
rJMSF030A19+ TGAAGAAAATATGGGGCTAAAATTAAACCATATGAACAGTGCCACAGAGCTTAAAGAGGT
____________________________________________________________
consensus TGAAGAAAATATGTGGCTAAAATTAAACCATATGAACAGTGCCACAGAGCTTAAAGAGGT
. : . : . : . : . : . :
rJMSF047N03+ TGGAGTTAGGTTTGACAAGATTGGACAAGTCTTCAATATGCCAAAGAAATATGAAAATAT
rJMSF030A19+ TGGAGTTAGGTTTGACAAGATTGGACAAGTCTTCAATATGCCAAAGAAATATGAAAATAT
____________________________________________________________
consensus TGGAGTTAGGTTTGACAAGATTGGACAAGTCTTCAATATGCCAAAGAAATATGAAAATAT
. : . : . : . : . : . :
rJMSF047N03+ TCCATCACCCGAATATAGTGGTGCCATTAGCTTGTTCGATATAACCTTTCATAATGGGGT
rJMSF030A19+ TCCATCACCCGAATATAGTGGTGCCATTAGCTTGTTCGATATAACCTTTCATAATGGGGT
____________________________________________________________
consensus TCCATCACCCGAATATAGTGGTGCCATTAGCTTGTTCGATATAACCTTTCATAATGGGGT
. : . : . : . : . : . :
rJMSF047N03+ AATGACCATACCTTGCTTTAAAGTTGACAACTTCACTGAACTATTCTTCCGAAACATGAT
rJMSF030A19+ AATGACCATACCTTGCTTTAAAGTTGACAACTTCACTGAACTATTCTTCCGAAACATGAT
____________________________________________________________
consensus AATGACCATACCTTGCTTTAAAGTTGACAACTTCACTGAACTATTCTTCCGAAACATGAT
. : . : . : . : . : . :
rJMSF047N03+ TGCCATGGAGCAGCGCTGCGACACACTAAACCCCAAATACTTCACCGATTATACGAGGTT
rJMSF030A19+ TGCCATGGAGCAGCGCTGCGACACACTAAACCCCAAATACTTCACCGATTATACGAGGTT
____________________________________________________________
consensus TGCCATGGAGCAGCGCTGCGACACACTAAACCCCAAATACTTCACCGATTATACGAGGTT
. : . : . : . : . : . :
rJMSF047N03+ AATGGACCACTTGTTGGACACCAAAAGAGACGTCACTTTGCTCCGCAAGAATGGGATCAT
rJMSF030A19+ AATGGACCACTTGTTGGACACCAAAAGAGACGTCACTTTGCTCCGCAAGAATGGGATCAT
____________________________________________________________
consensus AATGGACCACTTGTTGGACACCAAAAGAGACGTCACTTTGCTCCGCAAGAATGGGATCAT
. : . : . : . : . : . :
rJMSF047N03+ TCAAAACCTCTTAGATGAAGATAATAAGGTGGCCTATATTTTCAACAACCTCTTAGATGA
rJMSF030A19+ TCAAAACCTCTTAGATGAAGATAATAAGGTGGCCTATATTTTCAACAACCTCTTAGATGA
____________________________________________________________
consensus TCAAAACCTCTTAGATGAAGATAATAAGGTGGCCTATATTTTCAACAACCTCTTAGATGA
. : . : . : . : . : . :
rJMSF047N03+ AGATTATACTTGTTCCACCAACTTCTATTTTTCGTCGGTGTACAAGGATGTGGATGAACA
rJMSF030A19+ AGATTATACTTGTTCCACCAACTTCTATTTTTCGTCGGTGTACAAGGATGTGGATGAACA
____________________________________________________________
consensus AGATTATACTTGTTCCACCAACTTCTATTTTTCGTCGGTGTACAAGGATGTGGATGAACA
. : . : . : . : . : . :
rJMSF047N03+ TTCTCGCAATACCTATTGTTATTTATTGAGCCAACCAGGATCTTTTAACAGTGTATTGAT
rJMSF030A19+ TTCTCGCAATACCTATTGTTATTTATTGAGCCAACCAGGATCTTTTAACAGTGTATTGAT
____________________________________________________________
consensus TTCTCGCAATACCTATTGTTATTTATTGAGCCAACCAGGATCTTTTAACAGTGTATTGAT
. : . : . : . : . : . :
rJMSF047N03+ AGTGTTTGCTAGTATCTTCGTCGGTGTCCCCTTGTTGATTTTGGCAGTTAGAAAAAAATA
rJMSF030A19+ AGTGTTTGCTAGTATCTTCGTCGGTGTCCCCTTGTTGATTTTGGCAGTTAGAAAAAAATA
____________________________________________________________
consensus AGTGTTTGCTAGTATCTTCGTCGGTGTCCCCTTGTTGATTTTGGCAGTTAGAAAAAAATA
. : . : . : . : . : . :
rJMSF047N03+ TTATTAATAACCCTAGCTGCTTCCTCTACCCATTTCAATCCCTAATTAAAATATGTACGT
rJMSF030A19+ TTATTAATAACCCTAGCTGCTTCCTCTACCCATTTCAATCCCTAATTAAAATATGTACGT
____________________________________________________________
consensus TTATTAATAACCCTAGCTGCTTCCTCTACCCATTTCAATCCCTAATTAAAATATGTACGT
. : . : . : . : . : . :
rJMSF047N03+ ACTGTGTATTTAAGATGTAGTTTAACTAGTTTCATCATATCAATGTGTACTGC
rJMSF030A19+ ACTGTGTATTTAAGATGTAGTTTAACTAGTTTCATCATATCAATGTGTACTGCATATATA
____________________________________________________________
consensus ACTGTGTATTTAAGATGTAGTTTAACTAGTTTCATCATATCAATGTGTACTGCATATATA