Contig 008556:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF028F07Sequence638010743 (2)ref|XP_010326949.1|190PREDICTED: uncharacterized protein LOC101266869 [Solanum lycopersicum] ref|XP_01755008556 (2)ref|XP_011009263.1|3e-38PREDICTED: ABC transporter B family member 25-like isoform X2 [Populus euphrati
JMSF030A07Sequence628010743 (2)ref|XP_009762061.1|213PREDICTED: uncharacterized protein LOC104214128 [Nicotiana sylvestris]684008556 (2)emb|CDP18058.1|4e-34unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF030A07+                                            GACAGGATCATAAAACCGTTCAATCA
                      ____________________________________________________________
consensus                                               GACAGGATCATAAAACCGTTCAATCA
 
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rJMSF030A07+          AGTTCGNTATGGTAGTCTGCAGCAAAAGAAACGTGTTGCATCCTCTACACAGACAGGCAT
                      ____________________________________________________________
consensus             AGTTCGNTATGGTAGTCTGCAGCAAAAGAAACGTGTTGCATCCTCTACACAGACAGGCAT
 
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rJMSF030A07+          GGCGGGGAAACACAAATTTTGAATGGTATGAGATTATGAGAAATNACCTTGCCACCGCCA
                      ____________________________________________________________
consensus             GGCGGGGAAACACAAATTTTGAATGGTATGAGATTATGAGAAATNACCTTGCCACCGCCA
 
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rJMSF030A07+          CTTGGACCGACCAGGGCAACCTTTGAGCGAGGTTGCAGTTTCAGTGTAATACCCTAAAAC
rJMSF028F07+                                   AGCGAGGTTGCAGTTTCAGTGTAATACCCTAAANC
                      ____________________________________________________________
consensus             CTTGGACCGACCAGGGCAACCTTTGAGCGAGGTTGCAGTTTCAGTGTAATACCCTAAAAC
 
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rJMSF030A07+          CGTAGAATGTTTGTACTCCAGTGAGCAAAATCCGTTTCCAGAACAAGGATATGATGATTC
rJMSF028F07+          CGTAGAATGTTTGTACTCCAGTGAGCAAAATCCGTTTCCAGAACAAGGATATGATGATTC
                      ____________________________________________________________
consensus             CGTAGAATGTTTGTACTCCAGTGAGCAAAATCCGTTTCCAGAACAAGGATATGATGATTC
 
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rJMSF030A07+          CTANAGAGGAATGGTTATTAGTTATTACCTTGAGGACCATATGGTTGGGACGCGATGGAT
rJMSF028F07+          CTAAAGAGGAATGGTTATTAGTTATTACCTTGAGGACCATATGGTTGGGACGCGATGGAT
                      ____________________________________________________________
consensus             CTAAAGAGGAATGGTTATTAGTTATTACCTTGAGGACCATATGGTTGGGACGCGATGGAT
 
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rJMSF030A07+          AGGCAAACCAGACGTCGTCTAATTCTACATCTGCATCTTCGTCTCTGCAACATACAATGG
rJMSF028F07+          AGGCAAACCAGACGTCGTCTAATTCTACATCTGCATCTTCGTCTCTGCAACATACAATGG
                      ____________________________________________________________
consensus             AGGCAAACCAGACGTCGTCTAATTCTACATCTGCATCTTCGTCTCTGCAACATACAATGG
 
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rJMSF030A07+          TTTTCAAGACTCACTTTTTCAAGTGCTTTTGACTTCGTATATGAGGAAAGAACACCCAAG
rJMSF028F07+          TTTTCAAGACTCACTTTTTCAAGTGCTTTTGACTTCGTATATGAGGAAAGAACACCCAAG
                      ____________________________________________________________
consensus             TTTTCAAGACTCACTTTTTCAAGTGCTTTTGACTTCGTATATGAGGAAAGAACACCCAAG
 
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rJMSF030A07+          AATCGGCTTCAGAAGACCTACAAGGCTNCAACTCACCCCAAAGGGCATTTGTTTCCCGAT
rJMSF028F07+          AATCGGCTTCAGAAGACCTACAAGGCTACAACTCACCCCAAAGGGCATTTGTTTCCCGAT
                      ____________________________________________________________
consensus             AATCGGCTTCAGAAGACCTACAAGGCTACAACTCACCCCAAAGGGCATTTGTTTCCCGAT
 
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rJMSF030A07+          TTTGGCATAGANGAGACGCGATCCAAGAGCTGGAAAACTCGCCTACTTGCCCCTGCAGCT
rJMSF028F07+          TTTGGCATAGATGAGACGCGATCCAAGAGCTGGAAAACTCGCCTACTTGCCCCTGCAGCT
                      ____________________________________________________________
consensus             TTTGGCATAGATGAGACGCGATCCAAGAGCTGGAAAACTCGCCTACTTGCCCCTGCAGCT
 
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rJMSF030A07+          TTCATCGCCACAGTGTATGATCCAGATAGCCCGGACACTGAAGANTGAACTGCAAAAAGG
rJMSF028F07+          TTCATCGCCACAGTGTATGATCCAGATAGCCCGGACACTGAAGATTGAACTGCAAAAAGG
                      ____________________________________________________________
consensus             TTCATCGCCACAGTGTATGATCCAGATAGCCCGGACACTGAAGATTGAACTGCAAAAAGG
 
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rJMSF030A07+          GAAAAGGAAAGTTACATAATAGTGTATAAATAACAAAAGATTGAANTTAATCATGCTT  
rJMSF028F07+          GAAAAGGAAAGTTACATAATAGTGTATAAATAACAAAAGATTGAATTTAATCATGCTTTT
                      ____________________________________________________________
consensus             GAAAAGGAAAGTTACATAATAGTGTATAAATAACAAAAGATTGAATTTAATCATGCTTTT
 
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rJMSF028F07+          TGGTGTATTTACCATGTTAAATTCATTTACAGATATTGAGGTGAAGAAAAAACCAAGAGT
                      ____________________________________________________________
consensus             TGGTGTATTTACCATGTTAAATTCATTTACAGATATTGAGGTGAAGAAAAAACCAAGAGT
 
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rJMSF028F07+          TTCTCACCTGTTAGGCTATAAAGAATGAAAGATGTCAGAGCCCCAGCTGTGATTGAGCCA
                      ____________________________________________________________
consensus             TTCTCACCTGTTAGGCTATAAAGAATGAAAGATGTCAGAGCCCCAGCTGTGATTGAGCCA
 
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rJMSF028F07+          TGAATTCTCAAAGTAGCTCCATAAAGAACTACAAGCATAGCCGGTAGCCTTGCTGCTGCA
                      ____________________________________________________________
consensus             TGAATTCTCAAAGTAGCTCCATAAAGAACTACAAGCATAGCCGGTAGCCTTGCTGCTGCA
 
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rJMSF028F07+          CTTAGGCTTCCATAGAAAAGACCAACTATTTTCTGCTCAACAAAACATCAATGGATTGAC
                      ____________________________________________________________
consensus             CTTAGGCTTCCATAGAAAAGACCAACTATTTTCTGCTCAACAAAACATCAATGGATTGAC