Contig 008531:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF023P07Sequence666008531 (2)ref|XP_010680104.1|4e-43PREDICTED: eukaryotic translation initiation factor 3 subunit J-like [Beta vulg759008531 (2)ref|XP_008238161.1|9e-59PREDICTED: eukaryotic translation initiation factor 3 subunit J-like [Prunus mu

Alignment

This contig is upended


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JMSF023P07-                                                       GATGCTGTGCGGAAGC
                      ____________________________________________________________
consensus                                                         GATGCTGTGCGGAAGC
 
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JMSF023P07-           CTGACTCCACTCCGGAATTTGAAGCCCGTCGACCGGAAATCTTTCCTTCATCGCCGCAAA
                      ____________________________________________________________
consensus             CTGACTCCACTCCGGAATTTGAAGCCCGTCGACCGGAAATCTTTCCTTCATCGCCGCAAA
 
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JMSF023P07-           TTAGTCAACTCCGACGACTATTCGTATATTAATCAGGAAAGAGGACTTGCTACTCTGACA
                      ____________________________________________________________
consensus             TTAGTCAACTCCGACGACTATTCGTATATTAATCAGGAAAGAGGACTTGCTACTCTGACA
 
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JMSF023P07-           ACACAGATACTGAGCTGAAACTGCTGCTGAACTATAAGAGATGGAGAGTTGGGAGGATGA
                      ____________________________________________________________
consensus             ACACAGATACTGAGCTGAAACTGCTGCTGAACTATAAGAGATGGAGAGTTGGGAGGATGA
 
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JMSF023P07-           TGTAACTATTCCTGACCTAAAGAAGGGGCAACCACAGAGTAAATGGGATGATGAGGATGT
                      ____________________________________________________________
consensus             TGTAACTATTCCTGACCTAAAGAAGGGGCAACCACAGAGTAAATGGGATGATGAGGATGT
 
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JMSF023P07-           GGATGACAATGATGTAAAAGACTCTTGGGAAGATGAGGATGATGAGCCTGCTCCGGCACC
                      ____________________________________________________________
consensus             GGATGACAATGATGTAAAAGACTCTTGGGAAGATGAGGATGATGAGCCTGCTCCGGCACC
 
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JMSF023P07-           TAAACCAGAGCCTCCTGTTGAAAAGGCTCCAAAAAAGGCTGCTGCTAAAGCTACTGAAAC
rJMSF023P07+                                                        AAAGCTACTGAAAC
                      ____________________________________________________________
consensus             TAAACCAGAGCCTCCTGTTGAAAAGGCTCCAAAAAAGGCTGCTGCTAAAGCTACTGAAAC
 
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JMSF023P07-           GAAGGGCAAAGTGGTTAAAGTTGCACCGAAGGAGGAGGAGCCTTTAGATCCAGTAGCTGA
rJMSF023P07+          GAAGGGCAAAGTGGTTAAAGTTGCACCGAAGGAGGAGGAGCCTTTAGATCCAGTAGCTGA
                      ____________________________________________________________
consensus             GAAGGGCAAAGTGGTTAAAGTTGCACCGAAGGAGGAGGAGCCTTTAGATCCAGTAGCTGA
 
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JMSF023P07-           AAAACTACGACAACAGAGGCTTGTGGAGGAAGCTGATTATAAGTCAACAACAGAATTGTT
rJMSF023P07+          AAAACTACGACAACAGAGGCTTGTGGAGGAAGCTGATTATAAGTCAACAACAGAATTGTT
                      ____________________________________________________________
consensus             AAAACTACGACAACAGAGGCTTGTGGAGGAAGCTGATTATAAGTCAACAACAGAATTGTT
 
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JMSF023P07-           TGCTAAGAAAGGTGATGAGAAGACCCTTGAAAATTTCATTCCCAAAAGTGAAAGCGACTT
rJMSF023P07+          TGCTAAGAAAGGTGATGAGAAGACCCTTGAAAATTTCATTCCCAAAAGTGAAAGCGACTT
                      ____________________________________________________________
consensus             TGCTAAGAAAGGTGATGAGAAGACCCTTGAAAATTTCATTCCCAAAAGTGAAAGCGACTT
 
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JMSF023P07-           CTCAGAATATGCAGAGCTCATTTCTCATAAGCTGCGTTCATACGAGAAAAGCTACTTCTA
rJMSF023P07+          CTCAGAATATGCAGAGCTCATTTCTCATAAGCTGCGTTCATACGAGAAAAGCTACTTCTA
                      ____________________________________________________________
consensus             CTCAGAATATGCAGAGCTCATTTCTCATAAGCTGCGTTCATACGAGAAAAGCTACTTCTA
 
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JMSF023P07-           TATGGGATTACTCAAGGAGGTAATGCGACTTTCAATGACCACATTGAAAG          
rJMSF023P07+          TATGGGATTACTCAAGGAGGTAATGCGACTTTCAATGACCACATTGAAAGGGCAAGATGC
                      ____________________________________________________________
consensus             TATGGGATTACTCAAGGAGGTAATGCGACTTTCAATGACCACATTGAAAGGGCAAGATGC
 
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rJMSF023P07+          CAAAGAAGTGGCATCTTCTATTACTGCAATAGCAAATGAAAAAATAAAAGCAGAAAAAGA
                      ____________________________________________________________
consensus             CAAAGAAGTGGCATCTTCTATTACTGCAATAGCAAATGAAAAAATAAAAGCAGAAAAAGA
 
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rJMSF023P07+          TGCCAATGCTGGCAAAAAGAAAGGTGGAAAGAAGAAGCAGCTGCTAGTTGATCGGGCTGA
                      ____________________________________________________________
consensus             TGCCAATGCTGGCAAAAAGAAAGGTGGAAAGAAGAAGCAGCTGCTAGTTGATCGGGCTGA
 
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rJMSF023P07+          TGATGATGCTGTGGTTAATGCATATGATGGTTATGATGATGAATATGATTTTATGTGAGA
                      ____________________________________________________________
consensus             TGATGATGCTGTGGTTAATGCATATGATGGTTATGATGATGAATATGATTTTATGTGAGA
 
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rJMSF023P07+          AGAAGATCTTTACAAACCACATGTTTATTACACCAAACTACTGTCTTTCCAGTCCTATTA
                      ____________________________________________________________
consensus             AGAAGATCTTTACAAACCACATGTTTATTACACCAAACTACTGTCTTTCCAGTCCTATTA
 
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rJMSF023P07+          TCATCAGAAGTTAAACCCATGCATTTATGAAAACAAATATAAGGAGGATCCTGTGGCTTG
                      ____________________________________________________________
consensus             TCATCAGAAGTTAAACCCATGCATTTATGAAAACAAATATAAGGAGGATCCTGTGGCTTG
 
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rJMSF023P07+          TACTCCCAATTCTGGAGGCTGGTTGAGTGTCAGATTTTTGTCAAATAAAATATTATCTCG
                      ____________________________________________________________
consensus             TACTCCCAATTCTGGAGGCTGGTTGAGTGTCAGATTTTTGTCAAATAAAATATTATCTCG
 
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rJMSF023P07+          TTTTGTCTTTCTTGTTTTATTTATTTATTTTTCTTTTTGTTTCTTTGGGTAAATTGGTGT
                      ____________________________________________________________
consensus             TTTTGTCTTTCTTGTTTTATTTATTTATTTTTCTTTTTGTTTCTTTGGGTAAATTGGTGT