Contig 008523:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF022J17+                                                      GNCATTCAAAAAAGTA
                      ____________________________________________________________
consensus                                                         GNCATTCAAAAAAGTA
 
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rJMSF022J17+          GGAAAGTTTTTGTAGAGAAAACTGACATGAGAGCCAAAAGAATGGCACGCAAAGCGGGAG
                      ____________________________________________________________
consensus             GGAAAGTTTTTGTAGAGAAAACTGACATGAGAGCCAAAAGAATGGCACGCAAAGCGGGAG
 
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rJMSF022J17+          CCTTGGTGATATTTGTAGTTGATGCTAGTGGAAGTATGGCATTAAATAGGATGCAGAATG
                      ____________________________________________________________
consensus             CCTTGGTGATATTTGTAGTTGATGCTAGTGGAAGTATGGCATTAAATAGGATGCAGAATG
 
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rJMSF022J17+          CCAAGGGAGCAGCATTGAAGCTACTTGCAGAAAGTTATACAAGTAGAGATCAGGTTTCCA
                      ____________________________________________________________
consensus             CCAAGGGAGCAGCATTGAAGCTACTTGCAGAAAGTTATACAAGTAGAGATCAGGTTTCCA
 
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rJMSF022J17+          TTATTCCTTTCCGTGGAGATTCTGCAGAAGTTCTGTTGCCTCCTTCAAGGTCAATCTCAA
                      ____________________________________________________________
consensus             TTATTCCTTTCCGTGGAGATTCTGCAGAAGTTCTGTTGCCTCCTTCAAGGTCAATCTCAA
 
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rJMSF022J17+          TGGCAAGAAAGCGTCTTGAGAGACTTCCCTGTGGTGGGGGTTCTCCGCTTGCTCATGGAC
                      ____________________________________________________________
consensus             TGGCAAGAAAGCGTCTTGAGAGACTTCCCTGTGGTGGGGGTTCTCCGCTTGCTCATGGAC
 
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rJMSF022J17+          TAACTACGGCAGTTAGAGTTGGGATGAATGCAGAGAAGAGTGGTGATGTTGGACGCATAA
                      ____________________________________________________________
consensus             TAACTACGGCAGTTAGAGTTGGGATGAATGCAGAGAAGAGTGGTGATGTTGGACGCATAA
 
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rJMSF004F15+                                                                  CCTG
rJMSF022J17+          TGATCGTTGCAATTACTGATGGTAGAGCAAACATATCACTAAAAAGATCTACTGATCCTG
                      ____________________________________________________________
consensus             TGATCGTTGCAATTACTGATGGTAGAGCAAACATATCACTAAAAAGATCTACTGATCCTG
 
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rJMSF004F15+          AAGCAGCAGCCTCTTCTGATGCACCCAGACCCTCTGCTCAAGAGCTGAAGGATGAAATAC
rJMSF022J17+          AAGCAGCAGCCTCTTCTGATGCACCCAGACCCTCTGCTCAAGAGCTGAAGGATGAAATAC
                      ____________________________________________________________
consensus             AAGCAGCAGCCTCTTCTGATGCACCCAGACCCTCTGCTCAAGAGCTGAAGGATGAAATAC
 
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rJMSF004F15+          TTGAGGTAGCTGGTAAAATATACAAAGCGGGAATGTCCCTCCTTGTTATTGATACCGAGA
rJMSF022J17+          TTGAGGTAGCTGGTAAAATATACAAAGCGGGAATGTCCCTCCTTGTTATTGATACCGAGA
                      ____________________________________________________________
consensus             TTGAGGTAGCTGGTAAAATATACAAAGCGGGAATGTCCCTCCTTGTTATTGATACCGAGA
 
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rJMSF004F15+          ACAAGTTTGTGTCCACTGGCTTTGCAAAAGAAATTGCAAAAATTGCTCAAGGGAAGTATT
rJMSF022J17+          ACAAGTTTGTGTCCACTGGCTTTGCAAAAGAAATTGCAAAAATTGCTCAAGGGAAGTATT
                      ____________________________________________________________
consensus             ACAAGTTTGTGTCCACTGGCTTTGCAAAAGAAATTGCAAAAATTGCTCAAGGGAAGTATT
 
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rJMSF004F15+          ATTATTTGCCAAATGCTTCAGATGCTGTTATCTCTGCAACAACAAAGGATGCATTGGCTG
rJMSF022J17+          ATTATTTGCCAAATGCTTCAGATGCTGTTATCTCTGCAACAACAAAGGATGCATTGGCTG
                      ____________________________________________________________
consensus             ATTATTTGCCAAATGCTTCAGATGCTGTTATCTCTGCAACAACAAAGGATGCATTGGCTG
 
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rJMSF004F15+          CTCTAAAGAGCTCATAAACCTTAAAACTACTTGATTCTTAATTGTAGAGTGAGTGAGGCT
rJMSF022J17+          CTCTAAAGAGCTCATAAACCTTAAAACTACTTGATTCTTAATTGTAGAGTGAGTGAGGCT
                      ____________________________________________________________
consensus             CTCTAAAGAGCTCATAAACCTTAAAACTACTTGATTCTTAATTGTAGAGTGAGTGAGGCT
 
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rJMSF004F15+          GTTTGATAGTATTATTTGAGAGGAAGTACATCCTAACCAAAAAT                
rJMSF022J17+          GTTTGATAGTATTATTTGAGAGGAAGTACATCCTAACCAAAAATTGTATTTTGCGGTTTT
                      ____________________________________________________________
consensus             GTTTGATAGTATTATTTGAGAGGAAGTACATCCTAACCAAAAATTGTATTTTGCGGTTTT