Contig 008506:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF006E11Sequence377004955 (2)ref|XP_006358076.1|1e-26PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650540008506 (7)ref|XP_006397961.1|1e-58hypothetical protein EUTSA_v10001688mg [Eutrema salsugineum] ref|XP_009116946.1|
JMSF008M08Sequence261008506 (7)ref|XP_010259545.1|3e-13PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform X1 [Nelumbo nucifera] 662008506 (7)ref|XP_010259545.1|3e-58PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform X1 [Nelumbo nucifera]
JMSF012C21Sequence254000864 (4)gb|EYU44203.1|3e-15hypothetical protein MIMGU_mgv1a010963mg [Erythranthe guttata]592008506 (7)ref|XP_006397961.1|3e-58hypothetical protein EUTSA_v10001688mg [Eutrema salsugineum] ref|XP_009116946.1|
JMSF019O06Sequence505008506 (7)ref|XP_010259545.1|3e-58PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform X1 [Nelumbo nucifera] 667008506 (7)ref|XP_010259545.1|2e-57PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform X1 [Nelumbo nucifera]
JMSF024D05Sequence141008506 (7)ref|XP_004960522.1|4e-24PREDICTED: small nuclear ribonucleoprotein Sm D2-like isoform X1 [Setaria itali750011153 (20)ref|XP_006357406.1|9e-97PREDICTED: subtilisin-like protease-like [Solanum tuberosum]

Alignment

This contig is upended


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JMSF008M08-                                                                GGAAGAC
JMSF019O06-                                                                  AAGAC
rJMSF008M08+                                                                 AAGAC
rJMSF019O06+                                                                 AAGAC
                      ____________________________________________________________
consensus                                                                  GGAAGAC
 
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JMSF008M08-           TAAGAAGAGCCGTTTACAATCGCGCTCCTCTTCAATTTGACGATTCCAAAACCCTAATCC
JMSF019O06-           TAAGAAGAGCCGTTTACAATCGCGCTCCTCTTCAATTTGACGATTCCAAAACCCTAATCC
rJMSF008M08+          TAAGAAGAGCCGTTTACAATCGCGCTCCTCTTCAATTTGACGATTCCAAAACCCTAATCC
rJMSF019O06+          TAAGAAGAGCCGTTTACAATCGCGCTCCTCTTCAATTTGACGATTCCAAAACCCTAATCC
                      ____________________________________________________________
consensus             TAAGAAGAGCCGTTTACAATCGCGCTCCTCTTCAATTTGACGATTCCAAAACCCTAATCC
 
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JMSF008M08-           GTAAAACCCTCTATTCTTTTTTACCTTCGGAGTCCTCCTATTCGATCCAAGATGAGTCGG
JMSF019O06-           GTAAAACCCTCTATTCTTTTTTACCTTCGGAGTCCTCCTATTCGATCCAAGATGAGTCGG
rJMSF012C21+                                                             ATGAGTCGG
rJMSF006E11+                                                      ATCCAAGATGAGTCGG
rJMSF008M08+          GTAAAACCCTCTATTCTTTTTTACCTTCGGAGTCCTCCTATTCGATCCAAGATGAGTCGG
rJMSF019O06+          GTAAAACCCTCTATTCTTTTTTACCTTCGGAGTCCTCCTATTCGATCCAAGATGAGTCGG
                      ____________________________________________________________
consensus             GTAAAACCCTCTATTCTTTTTTACCTTCGGAGTCCTCCTATTCGATCCAAGATGAGTCGG
 
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JMSF008M08-           CCCATGGAAGAGGATGCCCCTGCGAAGAATGAGGAAGAGGAATTCAACACTGGCCCACTT
JMSF019O06-           CCCATGGAAGAGGATGCCCCTGCGAAGAATGAGGAAGAGGAATTCAACACTGGCCCACTT
rJMSF012C21+          CCAATGGAAGAGGATGCACCTGCGAAGAATGAAGAAGAGGAATTCAACACGGGGCCACTT
rJMSF006E11+          CCCATGGAAGAGGATGCCCNTGCGAAGAATGAGGAAGAGGAATTCAACACTGGCCCACTT
rJMSF008M08+          CCCATGGAAGAGGATGCCCCTGCGAAGAATGAGGAAGAGGAATTCAACACTGGCCCACTT
rJMSF019O06+          CCCATGGAAGAGGATGCCCCTGCGAAGAATGAGGAAGAGGAATTCAACACTGGCCCACTT
                      ____________________________________________________________
consensus             CCCATGGAAGAGGATGCCCCTGCGAAGAATGAGGAAGAGGAATTCAACACTGGCCCACTT
 
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JMSF008M08-           TCTGTTCTTATGATGAGTGTTAGAAACAACACTCAGGTTCTCATAAATTGCCGTAACAAC
JMSF019O06-           TCTGTTCTTATGATGAGTGTTAGAAACAACATTCAGGTTCTCATAAATTGCCGTAACAAC
rJMSF012C21+          TCTGTCCTCATGATGAGTGTCAGAAACAACACACAGGTGCTCATCAACTGTCGTAACAAC
JMSF024D05-                                                       AAATTGCCGTAACAAC
rJMSF006E11+          TCTGTTCTTATGATGAGTGTTAGAAACAACACTCAGGTTCTCATAAATTGCCGTAACAAC
rJMSF008M08+          TCTGTTCTTATGATGAGTGTTAGAAACAACACTCAGGTTCTCATAAATTGCCGTAACAAC
rJMSF019O06+          TCTGTTCTTATGATGAGTGTTAGAAACAACATTCAGGTTCTCATAAATTGCCGTAACAAC
                      ____________________________________________________________
consensus             TCTGTTCTTATGATGAGTGTTAGAAACAACACTCAGGTTCTCATAAATTGCCGTAACAAC
 
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JMSF008M08-           AGAAAGCTTCTGGG                                              
JMSF019O06-           AGAAAGCTTCTGGGCCGTGTCAGGGCTTTTGATCGTCACTGCAATATGGTGCTGGAAAAT
rJMSF012C21+          AGAAAGCTTCTAGGGCGTGTCAGGGCTTTTGATCGGCATTGCAACATGGTGCTGGAAAAT
JMSF024D05-           AGAAAGCTTCTGGGCCGTGTCAGGGCTTTTGATCGTCACTGCAATATGGTGCTGGAAAAT
rJMSF006E11+          AGAAAGCTTCTGGGCCGTGTCAGGGCTTTTGATCGTCACTGCAATATGGTGCTGGAAAAT
rJMSF008M08+          AGAAAGCTTCTGGGCCGTGTCAGGGCTTTTGATCGTCACTGCAATATGGTGCTGGAAAAT
rJMSF019O06+          AGAAAGCTTCTGGGCCGTGTCAGGGCTTTTGATCGTCACTGCAATATGGTGCTGGAAAAT
                      ____________________________________________________________
consensus             AGAAAGCTTCTGGGCCGTGTCAGGGCTTTTGATCGTCACTGCAATATGGTGCTGGAAAAT
 
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JMSF019O06-           GTTAGAGAGATGTGGACTGAGGTTCCAAAGACTGGCAAAGGGAAAAAGAAAGCACTACCT
rJMSF012C21+          GTTAGAGAGATGTGGACTGAGGTTCCCAAAACTGGCAAAGGGAAAAAGAAAGCTCTTCCT
JMSF024D05-           GTTAGAGAGATGTGGACTGAGGTTCCAAAGACTGGCAAAGGGAAAAANAAAGCACTACCT
rJMSF006E11+          GTTAGAGAGATGTGGACTGAGGTTCCAAAGACTGGCAAAGGGAAAAAGAAAGCACTACCT
rJMSF008M08+          GTTAGAGAGATGTGGACTGAGGTTCCAAAGACTGGCAAAGGGAAAAAGAAAGCATTACCT
rJMSF019O06+          GTTAGAGAGATGTGGACTGAGGTTCCAAAGACTGGCAAAGGGAAAAAGAAAGCACTACCT
                      ____________________________________________________________
consensus             GTTAGAGAGATGTGGACTGAGGTTCCAAAGACTGGCAAAGGGAAAAAGAAAGCACTACCT
 
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JMSF019O06-           GTTAACAAGGACAGGTTTATTAGCAAGATGTTCCTTCGTGGAGATTCAGTGATCATTGTT
rJMSF012C21+          GTTAACAAGGATAGGTTTATTAGCAAGATGTTTCTACGTGGAGATTCTGTGATCATTGTC
JMSF024D05-           GTTAA                                                       
rJMSF006E11+          GTTAACAAGGACAGGTTTATTAGCAAGATGTTCCTTCGTGGAGATTCAGTGATCATTGTT
rJMSF008M08+          GTTAACAAGGACAGGTTTATTAGCAAGATGTTCCTTCGTGGAGATTCAGTGATCATTGTT
rJMSF019O06+          GTTAACAAGGACAGGTTTATTAGCAAGATGTTCCTTCGTGGAGATTCAGTGATCATTGTT
                      ____________________________________________________________
consensus             GTTAACAAGGACAGGTTTATTAGCAAGATGTTCCTTCGTGGAGATTCAGTGATCATTGTT
 
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JMSF019O06-           CTCAGAAATCCTAAATAGAAGGTAACTACTGCAACAATATTTCTCTTGGCACTGGCCCCC
rJMSF012C21+          CTCCGAAATCCTAAATAGAAGG                                      
rJMSF006E11+          CTCAGAAATCCTAAATAGAAGGTAACTACTGCAACNATATTTCTCNTGGCACTGGCCCCC
rJMSF008M08+          CTCAGAAATCCTAAATAGAAGGTAACTACTGCAACAATATTTCTCTTGGCACTGGCCCCC
rJMSF019O06+          CTCAGAAATCCTAAATAGAAGGTAACTACTGCAACAATATTTCTCTTGGCACTGGCCCCC
                      ____________________________________________________________
consensus             CTCAGAAATCCTAAATAGAAGGTAACTACTGCAACAATATTTCTCTTGGCACTGGCCCCC
 
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JMSF019O06-           GCATAGGAGCAATATGGC                                          
rJMSF006E11+          GCATAGGAGCAATATGGCATTTTGGTTTAATGTGGACTCATTGTATGATATTTTAGAGCT
rJMSF008M08+          GCATAGGAGCAATATGGCATTTTGGTTTAATGTGGACTCATTGTATGATATTTTAGAGCT
rJMSF019O06+          GCATAGGAGCAATATGGCATTTTGGTTTAATGTGGACTCATTGTATGATATTTTAGAGCT
                      ____________________________________________________________
consensus             GCATAGGAGCAATATGGCATTTTGGTTTAATGTGGACTCATTGTATGATATTTTAGAGCT
 
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rJMSF006E11+          GACTTTTCCTTATAATGTACTACTAGTCTTGCTANTGCTGCNATGTGTATTGTTCTTAGT
rJMSF008M08+          GACTTTTCCTTATAATGTACTACTAGTCTTGCTATTGCTGCTATGTGTATTGTTCTTAGT
rJMSF019O06+          GACTTTTCCTTATAATGTACTACTAGTCTTGCTATTGCTGCTATGTGTATTGTTCTTAGT
                      ____________________________________________________________
consensus             GACTTTTCCTTATAATGTACTACTAGTCTTGCTATTGCTGCTATGTGTATTGTTCTTAGT
 
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rJMSF006E11+          TGAAGAATTTGTCGGGACGTTTGTTAGATTTNTGAGGGAGATTT                
rJMSF008M08+          TGAAGAATTTGTCGGGATGTTTGTTAGATTTGTGAGGGAGATTTTGTAATCATGC     
rJMSF019O06+          TGAAGAATTTGTCGGGATGTTTGTTAGATTTGTGAGGGAGATTTTGTAATCATGCTAAGG
                      ____________________________________________________________
consensus             TGAAGAATTTGTCGGGATGTTTGTTAGATTTGTGAGGGAGATTTTGTAATCATGCTAAGG