Contig 008502:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF018O10Sequence367008502 (2)ref|XP_006399670.1|6e-24hypothetical protein EUTSA_v10015136mg [Eutrema salsugineum] gb|ESQ41123.1| hypo429008502 (2)ref|XP_006399670.1|1e-23hypothetical protein EUTSA_v10015136mg [Eutrema salsugineum] gb|ESQ41123.1| hypo

Alignment

This contig is upended


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JMSF018O10-                                                              GAGAGGAAG
rJMSF018O10+                                                             GAGAGGAAG
                      ____________________________________________________________
consensus                                                                GAGAGGAAG
 
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JMSF018O10-           CCCTCCAGGACTAGCAACTCTCTCCAATGGCGTCTCGCTGCCGCACCCTGTCAAGACCAG
rJMSF018O10+          CCCTCCAGGACTAGCAACTCTCTCCAATGGCGTCTCGCTGCCGCACCCTGTCAAGACCAG
                      ____________________________________________________________
consensus             CCCTCCAGGACTAGCAACTCTCTCCAATGGCGTCTCGCTGCCGCACCCTGTCAAGACCAG
 
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JMSF018O10-           CCTTTAACCTAATCAGATCTACAGTCTCCAAACCCACACTAAAGCCCAATTTTTCCCTTC
rJMSF018O10+          CCTTTAACCTAATCAGATCTACAGTCTCCAAACCCACACTAAAGCCCAATTTTTCCCTTC
                      ____________________________________________________________
consensus             CCTTTAACCTAATCAGATCTACAGTCTCCAAACCCACACTAAAGCCCAATTTTTCCCTTC
 
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JMSF018O10-           AGAGTACTAGCTCCCTTCCGACGCTTCCTAGACCATTGCCTCAAATGGGTGCTCTTCAAT
rJMSF018O10+          AGAGTACTAGCTCCCTTCCGACGCTTCCTAGACCATTGCCTCAAATGGGTGCTCTTCAAT
                      ____________________________________________________________
consensus             AGAGTACTAGCTCCCTTCCGACGCTTCCTAGACCATTGCCTCAAATGGGTGCTCTTCAAT
 
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JMSF018O10-           CCCTGCTACCGCTCTACTCCGCCGTCTCTTCTGCCCGCCTCACCTCTTGCCTCGGCCTCG
rJMSF018O10+          CCCTGCTACCGCTCTACTCCGCCGTCTCTTCTGCCCGCCTCACCTCTTGCCTCGGCCTCG
                      ____________________________________________________________
consensus             CCCTGCTACCGCTCTACTCCGCCGTCTCTTCTGCCCGCCTCACCTCTTGCCTCGGCCTCG
 
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JMSF018O10-           ACTCTAAGTGCTCCCGCTCGTTGTCTCAGGAATTAGGTCTTTCTGTGCCTCGATAAGAGA
rJMSF018O10+          ACTCTAAGTGCTCCCGCTCGTTGTCTCAGGAATTAGGTCTTTCTGTGCCTCGATAAGAGA
                      ____________________________________________________________
consensus             ACTCTAAGTGCTCCCGCTCGTTGTCTCAGGAATTAGGTCTTTCTGTGCCTCGATAAGAGA
 
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JMSF018O10-           CTTACGCCAAAGATTGAAGATGTGGTTTGACATGGCATCTTATATTATAACATGAATT  
rJMSF018O10+          CTTACGCCAAAGATTGAAGATGTGGTTTGACATGGCATCTTATATTATAACATGAATTTG
                      ____________________________________________________________
consensus             CTTACGCCAAAGATTGAAGATGTGGTTTGACATGGCATCTTATATTATAACATGAATTTG
 
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rJMSF018O10+          GCGTCATATGTTTCTCATACCTCCTGTTTGAAAGTTCTGTATACTATAAACGTTGATGCT
                      ____________________________________________________________
consensus             GCGTCATATGTTTCTCATACCTCCTGTTTGAAAGTTCTGTATACTATAAACGTTGATGCT