| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF018C04 | Sequence | 559 | 002191 (3) | ref|XP_008346009.1| | 3e-36 | PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-li | 766 | 008500 (3) | gb|ACF17670.1| | 7e-111 | putative pyruvate dehydrogenase E1 beta subunit [Capsicum annuum] |
| JMSF018H23 | Sequence | 247 | 002191 (3) | 662 | 008500 (3) | ref|XP_006346842.1| | 2e-131 | PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-li | |||
| JMSF027L22 | Sequence | 651 | 002191 (3) | ref|XP_008346009.1| | 5e-58 | PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-li | 691 | 008500 (3) | gb|ACF17670.1| | 7e-143 | putative pyruvate dehydrogenase E1 beta subunit [Capsicum annuum] |
This contig is upended
. : . : . : . : . : . :
rJMFF018C04+ TACATTACACATCTGGTGGCCAGTTCAAGATACCAA
____________________________________________________________
consensus TACATTACACATCTGGTGGCCAGTTCAAGATACCAA
. : . : . : . : . : . :
rJMFF018C04+ TTGTCATTCGGGGTCCTGGTGGAGTAGGCAGGCAGCTCGGGGCCGAGCACTCACAGCGCC
rJMSF027L22+ TGGTGGAGTAGGCAGGCAGCTCGGGGCCGAGCACTCACAGCGCC
rJMSF018H23+ GCC
____________________________________________________________
consensus TTGTCATTCGGGGTCCTGGTGGAGTAGGCAGGCAGCTCGGGGCCGAGCACTCACAGCGCC
. : . : . : . : . : . :
rJMFF018C04+ TGGAGTCATATTTCCAATCGATCCCCGGAATCCAAATGGTAGCTTGCTCGACCCCCTACA
rJMSF027L22+ TGGAGTCATATTTCCAATCGATCCCCGGAATCCAAATGGTAGCTTGCTCGACCCCCTACA
rJMSF018H23+ TGGAGTCATATTTCCAATCGATCCCCGGAATCCAAATGGTAGCTTGCTCGACCCCTTACA
____________________________________________________________
consensus TGGAGTCATATTTCCAATCGATCCCCGGAATCCAAATGGTAGCTTGCTCGACCCCCTACA
. : . : . : . : . : . :
rJMFF018C04+ ACGCCAAGGGCTTGATGAAGGCTGCCATCAGAAGTGAGAACCCCGTCATTTCTTTTCGAG
rJMSF027L22+ ACGCCAAGGGCTTGATGAAGGCTGCCATCAGAAGTGAGAACCCCGTCA-TTCTTTTCGAG
rJMSF018H23+ ACGCCAAGGGCTTGATGAAGGCTGCCATCAGAAGTGAGAACCCCGTCA-TTCTTTTCGAG
____________________________________________________________
consensus ACGCCAAGGGCTTGATGAAGGCTGCCATCAGAAGTGAGAACCCCGTCA-TTCTTTTCGAG
. : . : . : . : . : . :
rJMFF018C04+ CACGTCTTGCTCTACAACCTCAAGGAGAGAATCGCCGACGAGGAGTACGTCTTGAACCTC
rJMSF027L22+ CACGTCTTGCTCTACAACCTCAAGGAGAGAATCGCCGACGAGGAGTACGTCTTGAACCTC
rJMSF018H23+ CACGTCTTGCTCTACAACCTCAAGGAGAGAATCGCCGACGAGGAGTACGTCTTGAACCTC
____________________________________________________________
consensus CACGTCTTGCTCTACAACCTCAAGGAGAGAATCGCCGACGAGGAGTACGTCTTGAACCTC
. : . : . : . : . : . :
rJMFF018C04+ GAAGAAGCCGAGATGGTGAGACCCGGGGAGCACGTCACAATCCTAACCTACTCAAGGATG
rJMSF027L22+ GAAGAAGCCGAGATGGTGAGACCCGGGGAGCACGTCACAATCCTAACCTACTCAAGGATG
rJMSF018H23+ GAAGAAGCCGAGATGGTGAGACCCGGGGAGCACGTCACAATCCTAACCTACTCAAGGATG
____________________________________________________________
consensus GAAGAAGCCGAGATGGTGAGACCCGGGGAGCACGTCACAATCCTAACCTACTCAAGGATG
. : . : . : . : . : . :
rJMFF018C04+ CGGTACCATGTGATGCAGGCCGCCAAGACCTTGGTAAACAAGGGATACGATCCAGAGGTT
rJMSF027L22+ CGGTACCATGTGATGCAGGCCGCCAAGACCTTGGTAAACAAGGGATACGATCCAGAGGTT
rJMSF018H23+ CGGTACCATGTGATGCAGGCCGCCAAGACCTTGGTAAACAAGGGATACGATCCAGAGGTT
____________________________________________________________
consensus CGGTACCATGTGATGCAGGCCGCCAAGACCTTGGTAAACAAGGGATACGATCCAGAGGTT
. : . : . : . : . : . :
rJMFF018C04+ ATCGATATCAGGTCATTGAAACCCTTTGATCTTTACACCATCGGGCAGTCGGTGAAGAAG
rJMSF027L22+ ATCGATATCAGGTCATTGAAACCCTTTGATCTTTACACCATCGGGCAGTCGGTGAAGAAG
rJMSF018H23+ ATCGATATCAGGTCATTGAAACCCTTTGATCTTTACACCATCGGGCAGTCGGTGAAGAAG
____________________________________________________________
consensus ATCGATATCAGGTCATTGAAACCCTTTGATCTTTACACCATCGGGCAGTCGGTGAAGAAG
. : . : . : . : . : . :
rJMFF018C04+ ACGCACCGCGTGCTCATCGTGGAGGAGTGCATGCGCACCGGAGGGATCGGTGCCAGCTTG
rJMSF027L22+ ACGCACCGCGTGCTCATCGTGGAGGAGTGCATGCGCACCGGAGGGATCGGTGCCAGCTTG
rJMSF018H23+ ACGCACCGCGTGCTCATCGTGGAGGAGTGCATGCGCACCGGAGGGATCGGTGCCAGCTTG
____________________________________________________________
consensus ACGCACCGCGTGCTCATCGTGGAGGAGTGCATGCGCACCGGAGGGATCGGTGCCAGCTTG
. : . : . : . : . : . :
rJMFF018C04+ ATTTCTGCCATAAATGAAAACTTCCATGACTACTTAGATGCCCCAATTGTGTGTTTGTCA
rJMSF027L22+ ATTTCTGCCATAAATGAAAACTTCCATGACTACTTAGATGCCCCAATTGTGTGTTTGTCA
rJMSF018H23+ ATTTNTGCCATAAATGAAAACTTCCATGACTACTTAGATGCCCCAATTGTGTGTTTGTCA
____________________________________________________________
consensus ATTTCTGCCATAAATGAAAACTTCCATGACTACTTAGATGCCCCAATTGTGTGTTTGTCA
. : . : . : . : . : . :
rJMFF018C04+ TCCCA
rJMSF027L22+ TCCCAGGATGTTCCAACTCCATATGCAGGAGTACTCGAGAATTGGACCGTGGTTCAACCA
rJMSF018H23+ TCCCAGGATGTTCCAACTCCATATGCAGGAGTACTCGAGAATTGGACCGTGGTTCAACCA
____________________________________________________________
consensus TCCCAGGATGTTCCAACTCCATATGCAGGAGTACTCGAGAATTGGACCGTGGTTCAACCA
. : . : . : . : . : . :
rJMSF027L22+ CCACAAATTGTTACTGCAGTAGAACAGCTATGCCATTAGTGGTAGGAGATCAGAACATAC
rJMSF018H23+ CCACAAATTGTTACTGCAGTAGAACAGCTATGCCATTAGTGGTAGGAGATCAGAACATAC
____________________________________________________________
consensus CCACAAATTGTTACTGCAGTAGAACAGCTATGCCATTAGTGGTAGGAGATCAGAACATAC
. : . : . : . : . : . :
rJMSF027L22+ AGCTTGGTAACTATTTTTCTCATCCTCT-CATGTTGCCTAATTCTGGTT
rJMSF018H23+ AGCTTGGTAACTATTTTTCTCATCCTCTACATGTTGCCTAATTCTGGTTTATTCTTATTT
____________________________________________________________
consensus AGCTTGGTAACTATTTTTCTCATCCTCTACATGTTGCCTAATTCTGGTTTATTCTTATTT