Contig 008497:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004N13Sequence479000895 (4)sp|P55004.1|PHYE_IPONI5e-89RecName: Full=Phytochrome E [Ipomoea nil] gb|AAA84970.1| phytochrome E [Ipomoea 761008497 (4)sp|P55004.1|PHYE_IPONI3e-123RecName: Full=Phytochrome E [Ipomoea nil] gb|AAA84970.1| phytochrome E [Ipomoea
JMSF018B15Sequence377000895 (4)sp|P55004.1|PHYE_IPONI4e-65RecName: Full=Phytochrome E [Ipomoea nil] gb|AAA84970.1| phytochrome E [Ipomoea 464008497 (4)sp|P55004.1|PHYE_IPONI5e-16RecName: Full=Phytochrome E [Ipomoea nil] gb|AAA84970.1| phytochrome E [Ipomoea
JMSF027M20Sequence670000895 (4)sp|P55004.1|PHYE_IPONI3e-134RecName: Full=Phytochrome E [Ipomoea nil] gb|AAA84970.1| phytochrome E [Ipomoea 721008497 (4)sp|P55004.1|PHYE_IPONI4e-112RecName: Full=Phytochrome E [Ipomoea nil] gb|AAA84970.1| phytochrome E [Ipomoea
JMSF039H06Sequence682000895 (4)sp|P55004.1|PHYE_IPONI8e-138RecName: Full=Phytochrome E [Ipomoea nil] gb|AAA84970.1| phytochrome E [Ipomoea 853008497 (4)sp|P55004.1|PHYE_IPONI2e-136RecName: Full=Phytochrome E [Ipomoea nil] gb|AAA84970.1| phytochrome E [Ipomoea

Alignment

This contig is upended


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rJMSF039H06+ GCTCCTTGAAGGTACCGTT
                      ____________________________________________________________
consensus GCTCCTTGAAGGTACCGTT
 
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rJMSF039H06+ ACTTCAGATCATCAGGAAACAGTTTCTCGAGACAAGTGAAGCCTGTGAAAAACAGATACT
                      ____________________________________________________________
consensus ACTTCAGATCATCAGGAAACAGTTTCTCGAGACAAGTGAAGCCTGTGAAAAACAGATACT
 
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rJMFF004N13+ TCGAGAATATGGATAGTGGAGGCATCGTGGATGGCAACAGAGTGGAGCTAAA
rJMSF027M20+ AACAGAGTGGAGCTAAA
rJMSF039H06+ CTCTATAATCGAGAATATGGATAGTGGAGGCATCGTGGATGGCAACAGAGTGGAGCTAAA
                      ____________________________________________________________
consensus CTCTATAATCGAGAATATGGATAGTGGAGGCATCGTGGATGGCAACAGAGTGGAGCTAAA
 
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rJMFF004N13+ GACGGAAGAGTTTGTTATAGGAAATGTGATAGATGCAGTTGTTAGTCAAGTTATGATCCC
rJMSF027M20+ GACGGAAGAGTTTGTTATAGG---TGTGATAGATGCAGTTGTTAGTCAAGTTATGATCCC
rJMSF039H06+ GACGGAAGAGTTTGTTATAGGAAATGTGATAGATGCAGTTGTTAGTCAAGTTATGATCCC
                      ____________________________________________________________
consensus GACGGAAGAGTTTGTTATAGGAAATGTGATAGATGCAGTTGTTAGTCAAGTTATGATCCC
 
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rJMFF004N13+ GCTGAAGGAGAAGAATTTACAGCTACTTCATGATATTCCGGACCAGATCAAATCTCTCCC
rJMSF027M20+ GCTGAAGGAGAAGAATTTACAGCTACTTCATGATATTCCGGACCAGATCAAATCTCTCCC
rJMSF039H06+ GCTGAAGGAGAAGAATTTACAGCTACTTCATGATATTCCGGACCAGATCAAATCTCTCCC
                      ____________________________________________________________
consensus GCTGAAGGAGAAGAATTTACAGCTACTTCATGATATTCCGGACCAGATCAAATCTCTCCC
 
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rJMFF004N13+ TATATACGGGGATCAAATTAAGCTTCAGCTTGTCCTATCGGATTTCTTGCTCAGCATAGT
rJMSF027M20+ TATATACGGGGATCAAATTAAGCTTCAGCTTGTCCTATCGGATTTCTTGCTCAGCATAGT
rJMSF039H06+ TATATACGGGGATCAAATTAAGCTTCAGCTTGTCCTATCGGATTTCTTGCTCAGCATAGT
                      ____________________________________________________________
consensus TATATACGGGGATCAAATTAAGCTTCAGCTTGTCCTATCGGATTTCTTGCTCAGCATAGT
 
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rJMFF004N13+ GCGCCACGCACCTTCTCCAGATGGTTGGGTGGAAATAAGGGTATCCCCGGGGTTGAAGCT
rJMSF027M20+ GCGCCACGCACCTTCTCCAGATGGTTGGGTGGAAATCAGGGTATCCCCGGGGTTGAAGCT
rJMSF039H06+ GCGCCACGCACCTTCTCCAGATGGTTGGGTGGAAATCAGGGTATCCCCGGGGTTGAAGCT
                      ____________________________________________________________
consensus GCGCCACGCACCTTCTCCAGATGGTTGGGTGGAAATCAGGGTATCCCCGGGGTTGAAGCT
 
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rJMFF004N13+ GATTCAAGACGGGAATGAGTTTATCCATATCCAGTTCAGAATGACTCATCCCGGGCAAGG
rJMSF027M20+ GATTCAAGACGGGAATGAGTTTATCCATATCCAGTTCAGAATGACTCATCCCGGGCAAGG
rJMSF039H06+ GATTCAAGACGGGAATGAGTTTATCCATATCCAGTTCAGAATGACTCATCCCGGGCAAGG
                      ____________________________________________________________
consensus GATTCAAGACGGGAATGAGTTTATCCATATCCAGTTCAGAATGACTCATCCCGGGCAAGG
 
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rJMFF004N13+ CCTCCCTTCTGCTCTTATCGAAGACATGGTAAGAGGAGGAACTCGATGGACAACACAAGA
rJMSF027M20+ CCTCCCTTCTGCTCTTATCGAAGACATGGTAAGAGGAGGAACTCGATGGACAACACAAGA
rJMSF039H06+ CCTCCCTTCTGCTCTTATCGAAGACATGGTAAGAGGAGGAACTCGATGGACAACACAAGA
                      ____________________________________________________________
consensus CCTCCCTTCTGCTCTTATCGAAGACATGGTAAGAGGAGGAACTCGATGGACAACACAAGA
 
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rJMFF004N13+ AGGAGTTGTCTTACATTTGTCACAGAAACTAGTTAGAATGATGAATGGTCATGTCCATTA
rJMSF027M20+ AGGAGTTGTCTTACATTTGTCACAGAAACTAGTTAGAATGATGAATGGTCATGTCCATTA
rJMSF039H06+ AGGAGTTGTCTTACATTTGTCACAGAAACTAGTTAGAATGATGAATGGTCATGTCCATTA
rJMSF018B15+ TTGTCACAGNAACTAGTTAGANTGATGAATGGTCATGTCCATTA
                      ____________________________________________________________
consensus AGGAGTTGTCTTACATTTGTCACAGAAACTAGTTAGAATGATGAATGGTCATGTCCATTA
 
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rJMFF004N13+ CGTGAGAGAACAACAAAAGTGCTACTTCCTAATCGACCTTGATTTCAAAACGCAAAAACC
rJMSF027M20+ CGTGAGAGAACAACAAAAGTGCTACTTCCTAATCGACCTTGATTTCAAAACGCAAAAACC
rJMSF039H06+ CGTGAGAGAACAACAAAAGTGCTACTTCCTAATCGACCTTGATTTCAAAACGCAAAAACC
rJMSF018B15+ CGTGAGAGANCAACAAAAGTGCTNCTTCCTAATCGACCTTGNTTTCAAAACGCAAANACC
                      ____________________________________________________________
consensus CGTGAGAGAACAACAAAAGTGCTACTTCCTAATCGACCTTGATTTCAAAACGCAAAAACC
 
. : . : . : . : . : . :
rJMFF004N13+ AAGGTCACGGGAGTCAAGTATGGATACGAAGGCAGAATAACCTGATTCTATCTCGAGATA
rJMSF027M20+ AAGGTCACGGGAGTCAAGTATGGATACGAAGGCAGAATAACCTGATTCTATCTCGAGATA
rJMSF039H06+ AAGGTCACGGGAGTCAAGTATGGATACGAAGGCAGAATAACCTGATTCTATCTCGAGATA
rJMSF018B15+ AAGGTCACGGGAGTCAAGTATGGATACGAAGGCAGAATAACCTGATTCTATCTCGAGATA
                      ____________________________________________________________
consensus AAGGTCACGGGAGTCAAGTATGGATACGAAGGCAGAATAACCTGATTCTATCTCGAGATA
 
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rJMFF004N13+ ATTTTTTCCTCGATCTCCATTGAGTCAGGTACACAATTTTAAAAACACATCTATTATGTG
rJMSF027M20+ ATTTTTTCCTCGATCTCCATTGAGTCAGGTACACAATTTTAAAAACACATCTATTATGTG
rJMSF039H06+ ATTTTTTCCTCGATCTCCATTGAGTCAGGTACACAATTTTAAAAACACATCTATTATGTG
rJMSF018B15+ ATTTTTTCCTCGATCTCCATTGAGTCAGNTACACAATTTTAAANACACATCTATTATGTG
                      ____________________________________________________________
consensus ATTTTTTCCTCGATCTCCATTGAGTCAGGTACACAATTTTAAAAACACATCTATTATGTG
 
. : . : . : . : . : . :
rJMFF004N13+ ATTCTGTCACTTGCTTCCCTATTGTCTTTTCCCAATATCCATCTTTGGGTGATTGGTTCT
rJMSF027M20+ ATTCTGTCACTTGCTTCCCTATTGTCTTTTCCCAATATCCATCTTTGGGTGATTGGTTCT
rJMSF039H06+ ATTCTGTCACTTGCTTCCCTATTGTCTTTTCCCAATATCCATCTTTGGGTGATTGGTTCT
rJMSF018B15+ ATTCTGTCACTTGCTTCCCTATTGTCTTTTCCCAATATCCATCTTTGGGTGATTGGTTNT
                      ____________________________________________________________
consensus ATTCTGTCACTTGCTTCCCTATTGTCTTTTCCCAATATCCATCTTTGGGTGATTGGTTCT
 
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rJMFF004N13+ TATTTAAGATCAGCTAAACTGAC
rJMSF027M20+ TATTTAAGATCAGCTAAACTGAC
rJMSF039H06+ TATTTAAGATCAGCTAAACTGAC
rJMSF018B15+ TATNTAAGATCAGCTAAACTGACATTTGAGAAAGTAAATTGCTGCGANGAATGATATGTA
                      ____________________________________________________________
consensus TATTTAAGATCAGCTAAACTGACATTTGAGAAAGTAAATTGCTGCGANGAATGATATGTA
 
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rJMSF018B15+ TGTCNGTATGTATGTATAATTCCNCACTATAAACTNGTCAGATCNTANGTAAGAAGTNAG
                      ____________________________________________________________
consensus TGTCNGTATGTATGTATAATTCCNCACTATAAACTNGTCAGATCNTANGTAAGAAGTNAG
 
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rJMSF018B15+ NGGGCTGGATTTCCATTCCCANTCCCCTCAAACGCACAAACATATAGGTATGAAAGCCGG
                      ____________________________________________________________
consensus NGGGCTGGATTTCCATTCCCANTCCCCTCAAACGCACAAACATATAGGTATGAAAGCCGG