Contig 008495:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF015D23Sequence243008495 (2)ref|XP_009783407.1|6e-23PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570821022494ref|XP_006493622.1|3e-21PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR-like isoform X
JMSF017L24Sequence326010653 (6)emb|CDP11291.1|6e-15unnamed protein product [Coffea canephora]750008495 (2)ref|XP_006358149.1|3e-63PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570

Alignment

This contig is upended


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rJMSF017L24+                                        TCACAGTTATTTCTTGGACATGATACAAAG
                      ____________________________________________________________
consensus                                           TCACAGTTATTTCTTGGACATGATACAAAG
 
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rJMSF017L24+          AGTGAGTATAATGATAGATGTGGCATCTGCTTTAGAATATCTCCACTATGGTTACTCCAA
                      ____________________________________________________________
consensus             AGTGAGTATAATGATAGATGTGGCATCTGCTTTAGAATATCTCCACTATGGTTACTCCAA
 
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rJMSF017L24+          TCCTATTATCCATTGCGACTTGAAACCCAGTAATGTGTTAATAGATGCTGATATGGTGGG
                      ____________________________________________________________
consensus             TCCTATTATCCATTGCGACTTGAAACCCAGTAATGTGTTAATAGATGCTGATATGGTGGG
 
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rJMSF017L24+          ATATTTGAGTGACTTTGGTGTTGCAAAGCTCTTAGGAGATGGGAATTCCATTGCCATTAC
                      ____________________________________________________________
consensus             ATATTTGAGTGACTTTGGTGTTGCAAAGCTCTTAGGAGATGGGAATTCCATTGCCATTAC
 
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rJMSF017L24+          AAACACCTTAGCAACAATTGGTTACATTGCTCCAGGTAAATGTTTCAGTTTTTTTTTAAC
                      ____________________________________________________________
consensus             AAACACCTTAGCAACAATTGGTTACATTGCTCCAGGTAAATGTTTCAGTTTTTTTTTAAC
 
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rJMSF017L24+          TTTCTCGATTTGATTTTAACATTCATCACATAACATTATGCATTTCTAATGGTTTCCTAT
                      ____________________________________________________________
consensus             TTTCTCGATTTGATTTTAACATTCATCACATAACATTATGCATTTCTAATGGTTTCCTAT
 
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JMSF015D23+                                                          CGTAGTGATATGT
rJMSF017L24+          CAAAATTTGCACTCCTAGAATATGGACAAGAAGGGCTTGTGTCCACACGTAGCGATATGT
                      ____________________________________________________________
consensus             CAAAATTTGCACTCCTAGAATATGGACAAGAAGGGCTTGTGTCCACACGTAGTGATATGT
 
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JMSF015D23+           ACAGTTATGGTATCATGATGCTTGAAGTTTTCACAAGGATTCAACCTGCAGATGAAATGT
rJMSF017L24+          ACAGTTATGGCATTATGTTGCTTGAAGTTTTCACGAAGACTCAGCCTGGAGATGAAATGT
                      ____________________________________________________________
consensus             ACAGTTATGGTATTATGTTGCTTGAAGTTTTCACGAGGATTCAGCCTGGAGATGAAATGT
 
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JMSF015D23+           TCAACGAAGATTTAAGTCTAAGAAGTTGGGTGCACAATGCATTTCCTACAAATATAAGTC
rJMSF017L24+          TCAGCGAAGATTTATGTCTGAGAAGTTGGGTGCACAATGCACTTCCTACAAATACAAATC
                      ____________________________________________________________
consensus             TCAGCGAAGATTTATGTCTGAGAAGTTGGGTGCACAATGCATTTCCTACAAATATAAGTC
 
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JMSF015D23+           AGATTATAGACCCAAACTTACTTAAACCGGATGAAGAAAGGTACGATGAAAAATTGCAAT
rJMSF017L24+          AGATTATAGATCCAAATTTACTTAAACCAGGTGAAGAAAAGTACGATGAAAAGTTGCAGT
                      ____________________________________________________________
consensus             AGATTATAGATCCAAATTTACTTAAACCGGGTGAAGAAAGGTACGATGAAAAGTTGCAGT
 
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JMSF015D23+           GTGCATTGGCTATCTTTGAGGTAGGCTTGAAATGCTCA                      
rJMSF017L24+          GTGTGTCGGCTATCTTTGAGATAGGCATGAAATGCTCAACAAAGTCGCCTCGAGAGAGGA
                      ____________________________________________________________
consensus             GTGTGTTGGCTATCTTTGAGGTAGGCTTGAAATGCTCAACAAAGTCGCCTCGAGAGAGGA
 
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rJMSF017L24+          TGAATGTGAAAGATGCCTTATCAGCATTGATAAAGATCAAAGCCCAACTTCTTTCCCTGT
                      ____________________________________________________________
consensus             TGAATGTGAAAGATGCCTTATCAGCATTGATAAAGATCAAAGCCCAACTTCTTTCCCTGT
 
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rJMSF017L24+          ATGCAAGTATTTAGAGTAGTATGTATTATTAGCATCTCCTATTGTATCTTTCTTAAAATG
                      ____________________________________________________________
consensus             ATGCAAGTATTTAGAGTAGTATGTATTATTAGCATCTCCTATTGTATCTTTCTTAAAATG