Contig 008484:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF015H20Sequence224011817 (2)ref|NP_001274802.1|2e-30soluble starch synthase 3, chloroplastic/amyloplastic [Solanum tuberosum] gb|AC272008484 (2)
JMSF031C23Sequence626022159ref|XP_009594931.1|7e-95PREDICTED: soluble starch synthase 3, chloroplastic/amyloplastic isoform X3 [Ni143008484 (2)

Alignment

This contig is upended


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rJMSF031C23+                                                                   TTT
rJMSF015H20+                                      AAGNGTTTTGCCCAANTTTGCCCNTTTGNTTT
                      ____________________________________________________________
consensus                                         AAGNGTTTTGCCCAANTTTGCCCNTTTGNTTT
 
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rJMSF031C23+          TTTTTTTTTTTCTGCAGCANNTANGATAGTTCAGTGTCCANTAATGACACANNTCANTAG
rJMSF015H20+          TTTTTTTTTTTCTGCAGCATGTAAGATAGTTCAGTGTCCAATAATGAAACATTTCATTAG
                      ____________________________________________________________
consensus             TTTTTTTTTTTCTGCAGCATGTAAGATAGTTCAGTGTCCAATAATGACACATTTCATTAG
 
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rJMSF031C23+          NTTTTCTGCTTCTGATAGAGCTCATTCAAAAGAATCAA                      
rJMSF015H20+          TTTTTCTGCTTCTTTTAGAGCTCATTCAAAAGAATCAACTGGGAAATTGAAGTGAGGAAT
                      ____________________________________________________________
consensus             TTTTTCTGCTTCTTTTAGAGCTCATTCAAAAGAATCAACTGGGAAATTGAAGTGAGGAAT
 
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rJMSF015H20+          GTGACAGATGTTTTGTTTTAATTTGCTGCTGCAACAACATCCAGATTCCAGATATTATCA
                      ____________________________________________________________
consensus             GTGACAGATGTTTTGTTTTAATTTGCTGCTGCAACAACATCCAGATTCCAGATATTATCA
 
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rJMSF015H20+          GATCAGACCACCATGTTTATCCTATGTTTCTAGGATGCTTGTAGGGTAGCATCTTGTAAC
                      ____________________________________________________________
consensus             GATCAGACCACCATGTTTATCCTATGTTTCTAGGATGCTTGTAGGGTAGCATCTTGTAAC