Contig 008479:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF014O13Sequence467007945 (5)ref|XP_006347109.1|5e-65PREDICTED: pre-mRNA-processing factor 17-like isoform X2 [Solanum tuberosum]728008479 (3)gb|EYU31266.1|3e-28hypothetical protein MIMGU_mgv1a003313mg [Erythranthe guttata]
JMSF032E17Sequence621007945 (5)ref|XP_006347109.1|2e-75PREDICTED: pre-mRNA-processing factor 17-like isoform X2 [Solanum tuberosum]763008479 (3)ref|XP_002892579.1|1e-69predicted protein [Arabidopsis lyrata subsp. lyrata] gb|EFH68838.1| predicted pr
JMSF043G08Sequence693007945 (5)ref|XP_006347109.1|1e-75PREDICTED: pre-mRNA-processing factor 17-like isoform X2 [Solanum tuberosum]830008479 (3)gb|EYU31266.1|1e-48hypothetical protein MIMGU_mgv1a003313mg [Erythranthe guttata]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF032E17+ CCAAATGGGAACTGGCTTGCGGCCCAGAGTTTGGATAATCAAATCCTTATCTAT
rJMSF043G08+ TGCGGCCCAGAGTTGGGATAATCAAATCCTTATCTAT
                      ____________________________________________________________
consensus CCAAATGGGAACTGGCTTGCGGCCCAGAGTTTGGATAATCAAATCCTTATCTAT
 
. : . : . : . : . : . :
rJMSF032E17+ AGTACCAGGGAGAGGTTCCAGCTGAACAAGAAGAAGAGATTTGCTGGACATATTGTAGCT
rJMSF043G08+ AGTACCAGGGAGAGGTTCCAGCTGAACCAGAAGAAGTGATTTGCTGGACATATTGTAGCT
                      ____________________________________________________________
consensus AGTACCAGGGAGAGGTTCCAGCTGAACCAGAAGAAGTGATTTGCTGGACATATTGTAGCT
 
. : . : . : . : . : . :
rJMSF032E17+ GGGTATGCCTGTCAGGTTAATTTCTCACCTGATGGGCGG-TTTGTCATGTCAGGAGATGG
rJMSF043G08+ GGGTATGCCTGTCAGGTTAATTTCTCACCTGATGGGCGGTTTTGTCATGTCAGGAGATGG
rJMSF014O13+ GGAGATGG
                      ____________________________________________________________
consensus GGGTATGCCTGTCAGGTTAATTTCTCACCTGATGGGCGGTTTTGTCATGTCAGGAGATGG
 
. : . : . : . : . : . :
rJMSF032E17+ TGAAGGTAGATGCTGGTTTTGGGATTGGAAGAGTTGCAAAGTCTTTAGAACTCTTAAGTG
rJMSF043G08+ TGAAGGTAGATGCTGGTTTTGGGATTGGAAGAGTTGCAAAGTCTTTAGAACTCTTAAGTG
rJMSF014O13+ TGAAGGTAGATGCTGGTTTTGGGATTGGAAGAGTTGCAAAGTCTTTAGAACTCTTAAGTG
                      ____________________________________________________________
consensus TGAAGGTAGATGCTGGTTTTGGGATTGGAAGAGTTGCAAAGTCTTTAGAACTCTTAAGTG
 
. : . : . : . : . : . :
rJMSF032E17+ TCATGATGGGGTATGCATTGGTGCTGCGTGGCATCCTTTGGAGCAAAGTAAAGTTGCTAC
rJMSF043G08+ TCATGATGGGGTATGCATTGGTGCTGCGTGGCATCCTTTGGAGCAAAGTAAAGTTGCTAC
rJMSF014O13+ TCATGATGGGGTATGCATTGGTGCTGCGTGGCATCCTTTGGAGCAAAGTAAAGTTGCTAC
                      ____________________________________________________________
consensus TCATGATGGGGTATGCATTGGTGCTGCGTGGCATCCTTTGGAGCAAAGTAAAGTTGCTAC
 
. : . : . : . : . : . :
rJMSF032E17+ CTGTGGCTGGGATGGCTTGATCAAATACTGGGACTAAACAATGGGATGCGAAGCTTGTCG
rJMSF043G08+ CTGTGGCTGGGATGGCTTGATCAAATACTGGGACTAAACAATGGGATGCGAAGCTTGTCG
rJMSF014O13+ CTGTGGCTGGGATGGCTTGATCAAATACTGGGACTAAACAATGGGATGCGAAGCTTGTCG
                      ____________________________________________________________
consensus CTGTGGCTGGGATGGCTTGATCAAATACTGGGACTAAACAATGGGATGCGAAGCTTGTCG
 
. : . : . : . : . : . :
rJMSF032E17+ TTTGTTTTTATTAATCATCTCATTCACGGAAGAGCTTCATTAATCGATAAGTTCAGTTGG
rJMSF043G08+ TTTGTTTTTATTAATCATCTCATTCACGGAAGAGCTTCATTAATCGATAAGTTCAGTTGG
rJMSF014O13+ TTTGTTTTTATTAATCATCTCATTCNCGGAAGAGCTTCATTAATCGATAAGTTCAGTTGG
                      ____________________________________________________________
consensus TTTGTTTTTATTAATCATCTCATTCACGGAAGAGCTTCATTAATCGATAAGTTCAGTTGG
 
. : . : . : . : . : . :
rJMSF032E17+ AATTTGTCAGTGTATTTTCAAATCTCATTTGGAGTAAGATATATCAGAAATCTGTATGAG
rJMSF043G08+ AATTTGTCAGTGTATTTTCAAATCTCATTTGGAGTAAGATATATCAGAAATCTGTATGAG
rJMSF014O13+ AATTTGTCAGNGTATTTTCAAATCTCATTTGGNGTAAGATATATCAGAAATCTGTATGAG
                      ____________________________________________________________
consensus AATTTGTCAGTGTATTTTCAAATCTCATTTGGAGTAAGATATATCAGAAATCTGTATGAG
 
. : . : . : . : . : . :
rJMSF032E17+ CTCGAATGCTTCCTCGCAATTTACAGGTTCAAACACCTTCCATATGTGTGCATGCTAGAA
rJMSF043G08+ CTCGAATGCTTCCTCGCAATTTACAGGTTCAAACACCTTCCATATGTGTGCATGCTAGAA
rJMSF014O13+ CTCGAATGCTTCCTCGCAATTTACAGGTTCAAACNCCTTCCATATGTGTGCNTGCTAGAA
                      ____________________________________________________________
consensus CTCGAATGCTTCCTCGCAATTTACAGGTTCAAACACCTTCCATATGTGTGCATGCTAGAA
 
. : . : . : . : . : . :
rJMSF032E17+ GAAAAACATCAATCCTAACTTGGTGCCCTTGCTTGCATCCCCTTCTATCTCTACTTGATG
rJMSF043G08+ GAAAAACATCAATCCTAACTTGGTGCCCTTGCTTGCATCCCCTTCTATCTCTACTTGATG
rJMSF014O13+ GAAAAACATCAATCCTAACTTGGNGCCCTTGCTTGCATCCCCTTCTATCTCTACTTGATG
                      ____________________________________________________________
consensus GAAAAACATCAATCCTAACTTGGTGCCCTTGCTTGCATCCCCTTCTATCTCTACTTGATG
 
. : . : . : . : . : . :
rJMSF032E17+ ATGATCAATTTTGCGCCATACAGAATTGTCTGATAGGCTGTCCAGGAAGTTGTTGAGTTG
rJMSF043G08+ ATGATCAATTTTGCGCCATACAGAATTGTCTGATAGGCTGTCCAGGAAGTTGTTGAGTTG
rJMSF014O13+ ATGATCAATTTTGCGCCATACAGAATTGTNTGATAGGCTGTCCNGGAAGTTGTTGAGTTG
                      ____________________________________________________________
consensus ATGATCAATTTTGCGCCATACAGAATTGTCTGATAGGCTGTCCAGGAAGTTGTTGAGTTG
 
. : . : . : . : . : . :
rJMSF032E17+ TATTATATTGCACTCTTTCCTGTATTATTGGCACTGGTCTGTTTTAATGAGTTGTAGGCT
rJMSF043G08+ TATTATATTGCACTCTTTCCTGTATTATTGGCACTGGTCTGTTTTAATGAGTTGTAGGCT
rJMSF014O13+ TATTATATTGCNCTCTTTCCTGTATTATTGGCNCTGGTCTGTTTTAATGAGTTGTAGGCT
                      ____________________________________________________________
consensus TATTATATTGCACTCTTTCCTGTATTATTGGCACTGGTCTGTTTTAATGAGTTGTAGGCT
 
. : . : . : . : . : . :
rJMSF032E17+ AAAATAGGATAGAACAAAGTGCAAAATTCACTTTGATCGACTGTAATT
rJMSF043G08+ AAAATAGGATAGAACAAAGTGCAAAATTCACTTTGATCGACTGTAATTTGTTATAGCAAT
rJMSF014O13+ AAAATAGGATAGAACAAAGTGCAAAATTCNCTTTGATCGACTGTAATTTGTTATAGCAAT
                      ____________________________________________________________
consensus AAAATAGGATAGAACAAAGTGCAAAATTCACTTTGATCGACTGTAATTTGTTATAGCAAT
 
. : . : . : . : . : . :
rJMSF043G08+ TTTTATTTGACTAGCGGATTCCCCTACATTTTGCCCATCTTGTATTTGGCGTGTGTTGGA
rJMSF014O13+ TTTTATTTGACTAGCGGATTCCCCTACNTTTTGCCCNTCTTGTATTTGGCGTGTGTTGGA
                      ____________________________________________________________
consensus TTTTATTTGACTAGCGGATTCCCCTACATTTTGCCCATCTTGTATTTGGCGTGTGTTGGA
 
. : . : . : . : . : . :
rJMSF043G08+ TTTGTAAGAAT
rJMSF014O13+ TTTGTAAGAATCTACNGAAGTGAGTGTAGTAATGAGAGTATGTGTGTAGAAAGATAGTTT
                      ____________________________________________________________
consensus TTTGTAAGAATCTACNGAAGTGAGTGTAGTAATGAGAGTATGTGTGTAGAAAGATAGTTT