Contig 008469:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001H05Sequence402006435 (4)ref|XP_009787103.1|1e-21PREDICTED: tryptophan--tRNA ligase, mitochondrial isoform X2 [Nicotiana sylvest741008469 (3)gb|KDP34172.1|6e-95hypothetical protein JCGZ_07743 [Jatropha curcas]
JMSF012D13Sequence391006435 (4)ref|XP_009603437.1|1e-08PREDICTED: tryptophan--tRNA ligase, mitochondrial isoform X2 [Nicotiana tomento779008469 (3)gb|AFK45558.1|6e-53unknown [Lotus japonicus]
JMSF024C16Sequence674021061ref|XP_009603437.1|1e-34PREDICTED: tryptophan--tRNA ligase, mitochondrial isoform X2 [Nicotiana tomento766008469 (3)gb|AFK45558.1|3e-67unknown [Lotus japonicus]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF001H05+ ATTT
                      ____________________________________________________________
consensus ATTT
 
. : . : . : . : . : . :
rJMSF001H05+ AAGGTACCTGAACCACTCATTCCACCTGCTGGAGCTCGAATAATGTCTCTTACTGATGGC
                      ____________________________________________________________
consensus AAGGTACCTGAACCACTCATTCCACCTGCTGGAGCTCGAATAATGTCTCTTACTGATGGC
 
. : . : . : . : . : . :
rJMSF001H05+ CTATCAAAGATGTCGAAGTCAGCACCTTCTGATCAATCTCGTATCAACTTGCTTGATCCA
rJMSF024C16+ CTTGATCCA
                      ____________________________________________________________
consensus CTATCAAAGATGTCGAAGTCAGCACCTTCTGATCAATCTCGTATCAACTTGCTTGATCCA
 
. : . : . : . : . : . :
rJMSF001H05+ AAAGATGTAATTGCAAATAAAATAAAACGATGCAAGACTGACGCATTAAGTCGCTTGGAA
rJMSF024C16+ AANGATGTAATAGCAAATAAGATAAAACGATGCAAGACTGACGCATTAAGTGGCTTGGAA
                      ____________________________________________________________
consensus AAAGATGTAATTGCAAATAAGATAAAACGATGCAAGACTGACGCATTAAGTGGCTTGGAA
 
. : . : . : . : . : . :
rJMSF001H05+ TTTGACAATCCTGAAAGACCGGAATGCAACAACCTTCTTTCTATTTATCAGCTTGTTTCA
rJMSF024C16+ TTTGACAATCCTGAAAGACCGGAATGCAACAACCTTCTTTCTATTTATCAGCTTGTTTCA
rJMSF012D13+ TTGACNATCCTGAAAGACCGGAATGCAACAACCTTCTTTCTATTTATCAGCTTGTTTCA
                      ____________________________________________________________
consensus TTTGACAATCCTGAAAGACCGGAATGCAACAACCTTCTTTCTATTTATCAGCTTGTTTCA
 
. : . : . : . : . : . :
rJMSF001H05+ GGCAAGACAAAACAGGAGGTTGCAGAGGAATGCCAAAATATGAATTGGGGAACATTTAAA
rJMSF024C16+ GGCAAGACAAAACAGGAGGTTGCAGAGGAATGCCAAAATATGAATTGGGGAACATTTAAA
rJMSF012D13+ GGCAAGACAAAACAGGAGGTTGCAGAGGAATGCCAAAATATGAATTGGGGAACATTTAAA
                      ____________________________________________________________
consensus GGCAAGACAAAACAGGAGGTTGCAGAGGAATGCCAAAATATGAATTGGGGAACATTTAAA
 
. : . : . : . : . : . :
rJMSF001H05+ CCCTTGCTTACAGATGCTTTAGTTGCACATCTACATCCTATCCAGGTTCGTTATGAGGAA
rJMSF024C16+ CCCTTGCTTACAGATGCTTTAGTTGCACATCTACATCCTATCCAGGTTCGTTATGAGGAA
rJMSF012D13+ CCCTTGCTTACAGATGCTTTAGTTGCACATCTACATCCTATCCAGGTTCGTTATGAGGAA
                      ____________________________________________________________
consensus CCCTTGCTTACAGATGCTTTAGTTGCACATCTACATCCTATCCAGGTTCGTTATGAGGAA
 
. : . : . : . : . : . :
rJMSF001H05+ ATAATGTCAGATACTACTTATTTGGACGAAGTTTTGGTCAAGGGTGCTAGAAAAGCATCA
rJMSF024C16+ ATAATGTCAGATACTACTTATTTGGATGAAGTTTTGGCCAAGGGTGCTAGAAAAGCATCA
rJMSF012D13+ ATAATGTCAGATACTACTTATTTGGATGAAGTTTTGGCCAACGGTGCTAGAAAAGCATCA
                      ____________________________________________________________
consensus ATAATGTCAGATACTACTTATTTGGATGAAGTTTTGGCCAAGGGTGCTAGAAAAGCATCA
 
. : . : . : . : . : . :
rJMSF001H05+ GATGTTGCAAATGTTACTCTCAATAATGTGTACGAGGCAATGGGATTCTTGCGAAGACAA
rJMSF024C16+ GATGTTGCAAATGTTACTCTCAATAATGTGTACCAGGCAATGGGATTCTTGCGAAGACAA
rJMSF012D13+ GATGTTGCAAATGTTACTCTCAATAATGTGTACCAGGCAATGGGATTCTTGCGAAGACAA
                      ____________________________________________________________
consensus GATGTTGCAAATGTTACTCTCAATAATGTGTACCAGGCAATGGGATTCTTGCGAAGACAA
 
. : . : . : . : . : . :
rJMSF001H05+ TAATCCATGCTGTATGAATAATCTGATAAGAAAGGTGCCTGCAATAACAACCTTGATGAT
rJMSF024C16+ TAATCCATGCTGTATGAATAATCTGATAAGAAAGGTGCCTGCAATAGCAACCTTGATGAT
rJMSF012D13+ TAATCCATGCTGTATGAATAATCTGATAAGAAAGGTGCCTGCAATAGCAACCTTGATGAT
                      ____________________________________________________________
consensus TAATCCATGCTGTATGAATAATCTGATAAGAAAGGTGCCTGCAATAGCAACCTTGATGAT
 
. : . : . : . : . : . :
rJMSF001H05+ GCCTTACTGGTACACCCAATACTCTTTACAAGTCAAGTTATACCTGCCAGTTCA-CCCTT
rJMSF024C16+ GCCTTATTGGTACACCCAATACTCTTTACAAGTCAAGTTATACCTGCCAGTTCACCCCTT
rJMSF012D13+ GCCTTATTGGTACACCCAATACTCTTTACAAGTCAAGTTATACCTGCCAGTTCACCCCTT
                      ____________________________________________________________
consensus GCCTTATTGGTACACCCAATACTCTTTACAAGTCAAGTTATACCTGCCAGTTCACCCCTT
 
. : . : . : . : . : . :
rJMSF001H05+ GATGAAGATAGAGATATTCACAATAGTGGCA
rJMSF024C16+ GATGAAGATAGAGATATTCACAATAGTGGCAGAAGGAGCCCACCGGCATTGAAGATGATC
rJMSF012D13+ GATGAAGATAGAGATATTCACAATAGTGGCAGAAGGAGCCCACCGGCATTGAAGATGATC
                      ____________________________________________________________
consensus GATGAAGATAGAGATATTCACAATAGTGGCAGAAGGAGCCCACCGGCATTGAAGATGATC
 
. : . : . : . : . : . :
rJMSF024C16+ AAGACTTCTCTCACTTAT-ATTCTAATTCGTGATCAAATACAGGTGTTCAACTCTCCAAC
rJMSF012D13+ AAGACTTCTCTCACTTATAATTCTAATTCGTGATCAAATACAGGTGTTCAACTCTCCAAC
                      ____________________________________________________________
consensus AAGACTTCTCTCACTTATAATTCTAATTCGTGATCAAATACAGGTGTTCAACTCTCCAAC
 
. : . : . : . : . : . :
rJMSF024C16+ TGCCTCCTCGTTACAATCATAATTTGTTTCTTATATGAAGGTTTGGCATTGTTATTTGGA
rJMSF012D13+ TGCCTCCTCGTTACAATCATAATTTGTTTCTTATATGAAGGTTTGGCATTGTTATTTGGA
                      ____________________________________________________________
consensus TGCCTCCTCGTTACAATCATAATTTGTTTCTTATATGAAGGTTTGGCATTGTTATTTGGA
 
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rJMSF024C16+ GAATACACTGCAAACCCCTGAATGACTAAACTAGGCTGAGATTTATATTTTTGTGCCAAG
rJMSF012D13+ GAATACACTGCAAACCCCTGAATGACTAAACTAGGCTGAGATTTATATTTTTGTGCCAAG
                      ____________________________________________________________
consensus GAATACACTGCAAACCCCTGAATGACTAAACTAGGCTGAGATTTATATTTTTGTGCCAAG
 
. : . : . : . : . : . :
rJMSF024C16+ ATGAGGCTGGATGTCTGACCACTTGTTACTTTTGGT
rJMSF012D13+ ATGAGGCTGGATGTCTGACCACTTGTTACTTTTGGTTACCTTTTATTGCATACATGCCAA
                      ____________________________________________________________
consensus ATGAGGCTGGATGTCTGACCACTTGTTACTTTTGGTTACCTTTTATTGCATACATGCCAA
 
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rJMSF012D13+ AGTTTATTTGAGTTAATGTGTCTTAGGTTTTGGTACCAATAACCCTATTGGAAACGTTTG
                      ____________________________________________________________
consensus AGTTTATTTGAGTTAATGTGTCTTAGGTTTTGGTACCAATAACCCTATTGGAAACGTTTG