Contig 008450:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF008H23+                                                   TACGAGAAACCCATGTCGT
                      ____________________________________________________________
consensus                                                      TACGAGAAACCCATGTCGT
 
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rJMSF008D23+                                               CTGGACATTCTACCCAGTCATGC
rJMSF008H23+          TTAACTCCCTCGCCAGATTCCTCGTAAGCTATCAACACTGGACATTCTACCCAGTCATGC
                      ____________________________________________________________
consensus             TTAACTCCCTCGCCAGATTCCTCGTAAGCTATCAACACTGGACATTCTACCCAGTCATGC
 
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rJMSF008D23+          TNTTAATCGCGAGAATCAACATGTTTATTCAATCCTGGAAAACTGTCTTATTCAAGAAAA
rJMSF008H23+          TCTTAATCGCGAGAATCAACATGTTTATTCAATCCTGGAAAACTGTCTTATTCAAGAAAA
                      ____________________________________________________________
consensus             TCTTAATCGCGAGAATCAACATGTTTATTCAATCCTGGAAAACTGTCTTATTCAAGAAAA
 
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rJMSF008D23+          AAATCTTCGCGAATCGTGCACAGGAGATTCTGGGATTAATCATCTTCTGGGTTTGGTACC
rJMSF008H23+          AAATCTTCGCGAATCGTGCACAGGAGATTCTGGGATTAATCATCTTCTGGGTTTGGTACC
                      ____________________________________________________________
consensus             AAATCTTCGCGAATCGTGCACAGGAGATTCTGGGATTAATCATCTTCTGGGTTTGGTACC
 
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rJMSF008D23+          CGTTTCTTCTCTCCAGTTTACCCAACCATTCGGAGAGAATAATGTTTGTGGTTCTTAGTT
rJMSF008H23+          CGTTTCTTCTCTCCAGTTTACCCAACCATTCGGAGAGAATAATGTTTGTGGTTCTTAGTT
                      ____________________________________________________________
consensus             CGTTTCTTCTCTCCAGTTTACCCAACCATTCGGAGAGAATAATGTTTGTGGTTCTTAGTT
 
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rJMSF008D23+          TAATGATGACGGGGGTGCAGCAAATCCAGTTCAGTTTAAACCATCTCGCCTCCAGCTTNT
rJMSF008H23+          TAATGATGACGGGGGTGCAGCAAATCCAGTTCAGTTTAAACCATCTCGCCTCCAGCTTCT
                      ____________________________________________________________
consensus             TAATGATGACGGGGGTGCAGCAAATCCAGTTCAGTTTAAACCATCTCGCCTCCAGCTTCT
 
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rJMSF008D23+          TCGCCGGGCCGCTCACCGGAAAAGACTGGGTGGAGAAGCAGATCGACGGGACTCTCGACA
rJMSF008H23+          TCGCCGGGCCGCTCACCGGAAAAGACTGGGTGGAGAAGCAGATCGACGGGACTCTCGACA
                      ____________________________________________________________
consensus             TCGCCGGGCCGCTCACCGGAAAAGACTGGGTGGAGAAGCAGATCGACGGGACTCTCGACA
 
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rJMSF008D23+          TCGATTGCTCGCCGTGGATGGATTGGTTCCACGGCGGATTACAGTTCCAGATCGAACACC
rJMSF008H23+          TCGATTGCTCGCCGTGGATGGATTGGTTCCACGGCGGATTACAGTTCCAGATCGAACACC
                      ____________________________________________________________
consensus             TCGATTGCTCGCCGTGGATGGATTGGTTCCACGGCGGATTACAGTTCCAGATCGAACACC
 
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rJMSF008D23+          ACCTGTTCCCGAGAATGCCGAGGTGCCAGCTGAGGAAAGTGTCGCCGTTTGTTAAACAGC
rJMSF008H23+          ACCTGTTCCCGAGAATGCCGAGGTGCCAGCTGAGGAAAGTGTCGCCGTTTGTTAAACAGC
                      ____________________________________________________________
consensus             ACCTGTTCCCGAGAATGCCGAGGTGCCAGCTGAGGAAAGTGTCGCCGTTTGTTAAACAGC
 
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rJMSF008D23+          TCTGCGAGAAACACGGAATAGCGTACAACCATGCATCTTTCTGGGCAGCCAATGCTTTGA
rJMSF008H23+          TCTGCGAGAAACACGGAATAGCGTACAACCATGCATCTTTCTGGGCAGCCAATGCTTTGA
                      ____________________________________________________________
consensus             TCTGCGAGAAACACGGAATAGCGTACAACCATGCATCTTTCTGGGCAGCCAATGCTTTGA
 
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rJMSF008D23+          TGTTCAAATCCATCCGAGATGCGGCGCTCATGGCCAGGGATTTATCGCCGGAGAAAGCGC
rJMSF008H23+          TGTTCAAATCCATCCGAGATGCGGCGCTCATGGCCAGGGATTTATCGCCGGAGAAAGCGC
                      ____________________________________________________________
consensus             TGTTCAAATCCATCCGAGATGCGGCGCTCATGGCCAGGGATTTATCGCCGGAGAAAGCGC
 
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rJMSF008D23+          CCAAGAACTTGGTCTGGGAAGCGTTAAACAGTTTCGGTTAACGCCGTCATCCGCCGTCGC
rJMSF008H23+          CCAAGAACTTGGTCTGGGAAGCGTTAAACAGTTTCGGTTAACGCCGTCATCCGCCGTCGC
                      ____________________________________________________________
consensus             CCAAGAACTTGGTCTGGGAAGCGTTAAACAGTTTCGGTTAACGCCGTCATCCGCCGTCGC
 
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rJMSF008D23+          CGGCGGAGATCCGTTAAACCCGACGTTTTATTTTATTTTATTTATTGTATTT        
rJMSF008H23+          CGGCGGAGATCCGTT-AACCCGACGTTTTATTTTATTTTATTTATTGTATTTTGTTCTGC
                      ____________________________________________________________
consensus             CGGCGGAGATCCGTTAAACCCGACGTTTTATTTTATTTTATTTATTGTATTTTGTTCTGC