Contig 008448:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003G01Sequence562002105 (6)gb|ABB72818.1|4e-81glutamate--tRNA ligase-like protein [Solanum tuberosum]787008448 (6)ref|XP_009796335.1|2e-88PREDICTED: glutamate--tRNA ligase, chloroplastic/mitochondrial [Nicotiana sylve
JMFF015N05Sequence551002105 (6)gb|ABB72818.1|6e-79glutamate--tRNA ligase-like protein [Solanum tuberosum]731008448 (6)ref|XP_009368383.1|1e-78PREDICTED: glutamate--tRNA ligase, chloroplastic/mitochondrial-like isoform X1
JMFF016B03Sequence616002105 (6)gb|ABB72818.1|9e-96glutamate--tRNA ligase-like protein [Solanum tuberosum]618008448 (6)ref|XP_007043106.1|1e-58Glutamate tRNA synthetase [Theobroma cacao] gb|EOX98937.1| Glutamate tRNA synthe
JMFF041L13Sequence652002105 (6)gb|ABB72818.1|8e-102glutamate--tRNA ligase-like protein [Solanum tuberosum]637008448 (6)ref|XP_009796335.1|7e-56PREDICTED: glutamate--tRNA ligase, chloroplastic/mitochondrial [Nicotiana sylve
JMFF050P03Sequence619002105 (6)gb|ABB72818.1|9e-96glutamate--tRNA ligase-like protein [Solanum tuberosum]583008448 (6)ref|XP_009368383.1|8e-48PREDICTED: glutamate--tRNA ligase, chloroplastic/mitochondrial-like isoform X1
JMSF008G20Sequence359002105 (6)ref|XP_004231106.1|2e-25PREDICTED: glutamate--tRNA ligase, chloroplastic/mitochondrial [Solanum lycoper693008448 (6)ref|XP_009368383.1|2e-59PREDICTED: glutamate--tRNA ligase, chloroplastic/mitochondrial-like isoform X1

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF003G01+ ATCAGAAGAGTTAATAC
                      ____________________________________________________________
consensus ATCAGAAGAGTTAATAC
 
. : . : . : . : . : . :
rJMFF003G01+ AAATCATTGGTAGCTGCTGGAAGGATGCTGGCATTCTTACAGAATCAGGGGGTGATTTCA
rJMFF015N05+ AATCAGGGGGTGATTTCA
                      ____________________________________________________________
consensus AAATCATTGGTAGCTGCTGGAAGGATGCTGGCATTCTTACAGAATCAGGGGGTGATTTCA
 
. : . : . : . : . : . :
rJMFF003G01+ TACAAGAGGCTGTCCAGCTATTGAAGGACGGAATCGACTTGATAAGCGATTCAGAGAAAG
rJMFF015N05+ TACAAGAGGCTGTCCAGCTATTGAAGGACGGAATCGACTTGATAAGCGATTCAGAGAAAG
                      ____________________________________________________________
consensus TACAAGAGGCTGTCCAGCTATTGAAGGACGGAATCGACTTGATAAGCGATTCAGAGAAAG
 
. : . : . : . : . : . :
rJMFF003G01+ CTCTTTCAAACTTACTATCTTATCCTTTTCATGAAACCTTGTCAAGTCCTGAAGGAAAAC
rJMFF016B03+ AACCTTGTCAAGTCCTGAAGGAAAAC
rJMFF015N05+ CTCTTTCAAACTTACTATCTTATCCTTTTCATGAAACCTTGTCAAGTCCTGAAGGAAAAC
rJMFF041L13+ TGAAGGAAAAC
rJMSF008G20+ AACCTTGTCAAGTCCTGAAGGAAAAC
                      ____________________________________________________________
consensus CTCTTTCAAACTTACTATCTTATCCTTTTCATGAAACCTTGTCAAGTCCTGAAGGAAAAC
 
. : . : . : . : . : . :
rJMFF003G01+ CTGTTCTTGAAGATCGACTTTCTGAAGTTGCGGAGAGCTTAGTAGCTGCCTACTCTAGTG
rJMFF016B03+ CTGTTCTTGAAGATCGACTTTCTGAAGTTGCGGAGAGCTTAGTAGCTGCCTACTCTAGTG
rJMFF015N05+ CTGTTCTTGAAGATCGACTTTCTGAAGTTGCGGAGAGCTTAGTAGCTGCCTACTCTAGTG
rJMFF041L13+ CTGTTCTTGAAGATCGACTTTCTGAAGTTGCGGAGAGCTTAGTAGCTGCCTACTCTAGTG
rJMFF050P03+ CTTAGTAGCTGCCTACTCTAGTG
rJMSF008G20+ CTGTTCTTGAAGATCGACTTTCTGAAGTTGCGGAGAGCTTAGTAGCTGCCTACTCTAGTG
                      ____________________________________________________________
consensus CTGTTCTTGAAGATCGACTTTCTGAAGTTGCGGAGAGCTTAGTAGCTGCCTACTCTAGTG
 
. : . : . : . : . : . :
rJMFF003G01+ GGGAGCTCTTTGGTGCACTTGAAGAAGGCCAACCCGGGTGGCAGAAGTGGGTAAAGAGCT
rJMFF016B03+ GGGAGCTCTTTGGTGCACTTGAAGAAGGCCAACCCGGGTGGCAGAAGTGGGTAAAGAGCT
rJMFF015N05+ GGGAGCTCTTTGGTGCACTTGAAGAAGGCCAACCCGGGTGGCAGAAGTGGGTAAAGAGCT
rJMFF041L13+ GGGAGCTCTTTGGTGCACTTGAAGAAGGCCAACCCGGGTGGCAGAAGTGGGTAAAGAGCT
rJMFF050P03+ GGGAGCTCTTTGGTGCACTTGAAGAAGGCCAACCCGGGTGGCAGAAGTGGGTAAAGAGCT
rJMSF008G20+ GGGAGCTCTTTGGTGCACTTGAAGAAGGCCAACCCGGGTGGCAGAAGTGGGTAAAGAGCT
                      ____________________________________________________________
consensus GGGAGCTCTTTGGTGCACTTGAAGAAGGCCAACCCGGGTGGCAGAAGTGGGTAAAGAGCT
 
. : . : . : . : . : . :
rJMFF003G01+ TTGGTAAATCACTGAAGCGGAAGGGAAAATCTCTGTTCATGCCCCTTAGGGTCTTGCTAA
rJMFF016B03+ TTGGTAAATCACTGAAGCGGAAGGGAAAATCTCTGTTCATGCCCCTTAGGGTCTTGCTAA
rJMFF015N05+ TTGGTAAATCACTGAAGCGGAAGGGAAAATCTCTGTTCATGCCCCTTAGGGTCTTGCTAA
rJMFF041L13+ TTGGTAAATCACTGAAGCGGAAGGGAAAATCTCTGTTCATGCCCCTTAGGGTCTTGCTAA
rJMFF050P03+ TTGGTAAATCACTGAAGCGGAAGGGAAAATCTCTGTTCATGCCCCTTAGGGTCTTGCTAA
rJMSF008G20+ TTGGTAAATCACTGAAGCGGAAGGGAAAATCTCTGTTCATGCCCCTTAGGGTCTTGCTAA
                      ____________________________________________________________
consensus TTGGTAAATCACTGAAGCGGAAGGGAAAATCTCTGTTCATGCCCCTTAGGGTCTTGCTAA
 
. : . : . : . : . : . :
rJMFF003G01+ CTGGAAAGCTTCACGGCCCTGATATCGGGTCGAGTATTGTTTTGCTGTATAAAGCTGGTA
rJMFF016B03+ CTGGAAAGCTTCACGGCCCTGATATCGGGTCGAGTATTGTTTTGCTGTATAAAGCTGGTA
rJMFF015N05+ CTGGAAAGCTTCACGGCCCTGATATCGGGTCGAGTATTGTTTTGCTGTATAAAGCTGGTA
rJMFF041L13+ CTGGAAAGCTTCACGGCCCTGATATCGGGTCGAGTATTGTTTTGCTGTATAAAGCTGGTA
rJMFF050P03+ CTGGAAAGCTTCACGGCCCTGATATCGGGTCGAGTATTGTTTTGCTGTATAAAGCTGGTA
rJMSF008G20+ CTGGAAAGCTTCACGGCCCTGATATCGGGTCGAGTATTGTTTTGCTGTATAAAGCTGGTA
                      ____________________________________________________________
consensus CTGGAAAGCTTCACGGCCCTGATATCGGGTCGAGTATTGTTTTGCTGTATAAAGCTGGTA
 
. : . : . : . : . : . :
rJMFF003G01+ ATTCAGGCGTTGTAGCATCTCAAGTTGGGTTTATACCGTTGGACGAAAGATTTAAAATGC
rJMFF016B03+ ATTCAGGCGTTGTAGCATCTCAAGTTGGGTTTATACCGTTGGACGAAAGATTTAAAATGC
rJMFF015N05+ ATTCAGGCGTTGTAGCATCTCAAGTTGGGTTTATACCGTTGGACGAAAGATTTAAAATGC
rJMFF041L13+ ATTCAGGCGTTGTAGCATCTCAAGTTGGGTTTATACCGTTGGACGAAAGATTTAAAATGC
rJMFF050P03+ ATTCAGGCGTTGTAGCATCTCAAGTTGGGTTTATACCGTTGGACGAAAGATTTAAAATGC
rJMSF008G20+ ATTCAGGCGTTGTAGCATCTCAAGTTGGGTTTATACCGTTGGACGAAAGATTTAAAATGC
                      ____________________________________________________________
consensus ATTCAGGCGTTGTAGCATCTCAAGTTGGGTTTATACCGTTGGACGAAAGATTTAAAATGC
 
. : . : . : . : . : . :
rJMFF003G01+ TCAGAGAAGTTGACTGGGAATCCTTCAGTAAAGATCCGCCTATACTGGAGTCTGCCGGTG
rJMFF016B03+ TCAGAGAAGTTGACTGGGAATCCTTCAGTAAAGATCCGCCTATACTGGAGTCTGCCGGTG
rJMFF015N05+ TCAGAGAAGTTGACTGGGAATCCTTCAGTAAAGATCCGCCTATACTGGAGTCTGCCGGTG
rJMFF041L13+ TCAGAGAAGTTGACTGGGAATCCTTCAGTAAAGATCCGCCTATACTGGAGTCTGCCGGTG
rJMFF050P03+ TCAGAGAAGTTGACTGGGAATCCTTCAGTAAAGATCCGCCTATACTGGAGTCTGCCGGTG
rJMSF008G20+ TCAGAGAAGTTGACTGGGAATCCTTCAGTAAAGATCCGCCTATACTGGAGTCTGCCGGTG
                      ____________________________________________________________
consensus TCAGAGAAGTTGACTGGGAATCCTTCAGTAAAGATCCGCCTATACTGGAGTCTGCCGGTG
 
. : . : . : . : . : . :
rJMFF003G01+ CTGCAACTCATTGAGGTAGACTGTAACTTGCGTTCCTTGAGTTCTTCTGTGATGACCTTT
rJMFF016B03+ CTGCAACTCATTGAGGTAGACTGTAACTTGCGTTCCTTGAGTTCTTCTGTGATGACCTTT
rJMFF015N05+ CTGCAACTCATTGAGGTAGACTGTAACTTGCGTTCCTTGAGTTCTTCTGTGATGACCTTT
rJMFF041L13+ CTGCAACTCATTGAGGTAGACTGTAACTTGCGTTCCTTGAGTTCTTCTGTGATGACCTTT
rJMFF050P03+ CTGCAACTCATTGAGGTAGACTGTAACTTGCGTTCCTTGAGTTCTTCTGTGATGACCTTT
rJMSF008G20+ CTGCAACTCATTGAGGTAGACTGTAACTTGCGTTCCTTGAGTTCTTCTGTGATGACCTTT
                      ____________________________________________________________
consensus CTGCAACTCATTGAGGTAGACTGTAACTTGCGTTCCTTGAGTTCTTCTGTGATGACCTTT
 
. : . : . : . : . : . :
rJMFF003G01+ CGTCGTGCTCATTTTTCAGATTGCCGATTGTTTTTTGGTCGACTCGGCCTTGAGTACTGT
rJMFF016B03+ CGTCGTGCTCATTTTTCAGATTGCCGATTGTTTTTTGGTCGACTCGGCCTTGAGTACTGT
rJMFF015N05+ CGTCGTGCTCATTTTTCAGATTGCCGATTGTTTTTTGGTCGACTCGGCCTTGAGTACTGT
rJMFF041L13+ CGTCGTGCTCATAATTCAGATTGCCGATTGTTTTTTGGTCGACTCGGCCTTGAGTACTGT
rJMFF050P03+ CGTCGTGCTCATTTTTCAGATTGCCGATTGTTTTTTGGTCGACTCGGCCTTGAGTACTGT
rJMSF008G20+ CGTCGTGCTCATTTTTCAGATTGCCGATTGTTTTTTGGTCGACTCGGCCTTGAGTACTGT
                      ____________________________________________________________
consensus CGTCGTGCTCATTTTTCAGATTGCCGATTGTTTTTTGGTCGACTCGGCCTTGAGTACTGT
 
. : . : . : . : . : . :
rJMFF003G01+ GCAATAACTTTTGAGGTCGCGTGAGTTTTAAAATCGTTAACGAAGCAGCTTGTAAATGTG
rJMFF016B03+ GCAATAACTTTTGAGGTCGCGTGAGTTTTAAAATCGTTAACGAAGCAGCTTGTAAATGTG
rJMFF015N05+ GCAATAACTTTTGAGGTCGCGTGAGTTTTAAAATCGTTAACGAAGCAGCTTGTAAATGTG
rJMFF041L13+ GCAATAACTTTTGAGGTCGCGTGAGTTTTAAAATCGTTAACGAAGCAGCTTGTAAATGTG
rJMFF050P03+ GCAATAACTTTTGAGGTCGCGTGAGTTTTAAAATCGTTAACGAAGCAGCTTGTAAATGTG
rJMSF008G20+ GCAATAACTTTTGAGGTCGCGTGAGTTTTAAAATCGTTAACGAAGCAGCTTGTAAATGTG
                      ____________________________________________________________
consensus GCAATAACTTTTGAGGTCGCGTGAGTTTTAAAATCGTTAACGAAGCAGCTTGTAAATGTG
 
. : . : . : . : . : . :
rJMFF003G01+ AGTTAAACAAGGAGATGGGAGTTTTTACAGCTTTTCCAGGTATAAATGGT
rJMFF016B03+ AGTTAAACAAGGAGATGGGAGTTTTTACAGCTTTTCCAGGTATAAATGGTTT
rJMFF015N05+ AGTTAAACAAGGAGATGGGAGTTTTTACAGCTTTTCCAGGTATAAATGGTTTA
rJMFF041L13+ AGTTAAACAAGGAGATGGGAGTTTTTACAGCTTTTCCAGGTATAAATGGTTTAAACTCCT
rJMFF050P03+ AGTTAAACAAGGAGATGGGAGTTTTTACAGCTTTTCCAGGTATAAATGGTTTATACTCCT
rJMSF008G20+ AGTTAAACAAGGAGATGGGAGTTTTTACAGCTTTTCCAGGTATAAATGGTTTATACTCCT
                      ____________________________________________________________
consensus AGTTAAACAAGGAGATGGGAGTTTTTACAGCTTTTCCAGGTATAAATGGTTTATACTCCT
 
. : . : . : . : . : . :
rJMFF041L13+ AATGTGATGATGATTTTGAG
rJMFF050P03+ AATGTGATGATGATTTTGAG
rJMSF008G20+ AATGTGATGATGATTTTGAGAAATCTTTGTGATGGTGAATATATATGATGGATGTGATAC
                      ____________________________________________________________
consensus AATGTGATGATGATTTTGAGAAATCTTTGTGATGGTGAATATATATGATGGATGTGATAC