| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF008G07 | Sequence | 363 | 008447 (4) | gb|ACO90183.1| | 1e-64 | nuclear cap-binding protein 20 [Nicotiana tabacum] | 779 | 008447 (4) | ref|XP_009604104.1| | 1e-92 | PREDICTED: nuclear cap-binding protein subunit 2-like [Nicotiana tomentosiformi |
| JMSF021O08 | Sequence | 690 | 007917 (4) | ref|XP_009795620.1| | 2e-91 | PREDICTED: inner membrane protein PPF-1, chloroplastic [Nicotiana sylvestris] r | 754 | 008447 (4) | ref|XP_009604104.1| | 7e-93 | PREDICTED: nuclear cap-binding protein subunit 2-like [Nicotiana tomentosiformi |
| JMSF039H17 | Sequence | 559 | 005118 (12) | 921 | 008447 (4) | ref|XP_009604104.1| | 5e-88 | PREDICTED: nuclear cap-binding protein subunit 2-like [Nicotiana tomentosiformi | |||
This contig is upended
. : . : . : . : . : . :
JMSF008G07- GCTGGGGCTAACCTGGGAAGGATTTCTCTGAGGAGAAAGAACAATGGCATCTCTCT
____________________________________________________________
consensus GCTGGGGCTAACCTGGGAAGGATTTCTCTGAGGAGAAAGAACAATGGCATCTCTCT
. : . : . : . : . : . :
JMSF008G07- TCAAGGATCTCAGCAAGATTTCAGCCTACAGAGATAGAAGGTTCCAGGGGACACAGGAAG
rJMSF039H17+ TCAGCAAGATTTCAGCCTACAGAGATAGAAGGTTCCAGGGGACACAGGAAG
____________________________________________________________
consensus TCAAGGATCTCAGCAAGATTTCAGCCTACAGAGATAGAAGGTTCCAGGGGACACAGGAAG
. : . : . : . : . : . :
JMSF008G07- AATTTGAGGAAGCTCTGCTTAAATCTACTACTGTTTATGTGGGGAACATGTCCTTCTATA
rJMSF039H17+ AATTTGAGGAAGCTCTGCTTAAATCTACTACTGTTTATGTGGGGAACATGTCCTTCTATA
____________________________________________________________
consensus AATTTGAGGAAGCTCTGCTTAAATCTACTACTGTTTATGTGGGGAACATGTCCTTCTATA
. : . : . : . : . : . :
JMSF008G07- CGACTGAGGAGCAAGTTTACGAGCTGTTCTCTCGTGCTGGAGAGATAAAAAAGATTGTCA
rJMSF039H17+ CGACTGAGGAGCAAGTTTACGAGCTGTTCTCTCGTGCTGGAGAGATAAAAAAGATTGTCA
____________________________________________________________
consensus CGACTGAGGAGCAAGTTTACGAGCTGTTCTCTCGTGCTGGAGAGATAAAAAAGATTGTCA
. : . : . : . : . : . :
JMSF008G07- TGGGTCTTGACAAGAACAGCAGAACTCCATGTGGTTTCTGTTTTGTGAT
rJMSF039H17+ TGGGTCTTGACAAGAACAGCAGAACTCCATGTGGTTTCTGTTTTGTGATAGGAAAGGGAA
____________________________________________________________
consensus TGGGTCTTGACAAGAACAGCAGAACTCCATGTGGTTTCTGTTTTGTGATAGGAAAGGGAA
. : . : . : . : . : . :
rJMSF039H17+ CTAGGGAAGTGCTGAAAGATGAGCAAGTAATCACTAATTTTAAATAATTTTCATACCAGA
rJMSF021O08+ AGA
rJMSF008G07+ AGA
____________________________________________________________
consensus CTAGGGAAGTGCTGAAAGATGAGCAAGTAATCACTAATTTTAAATAATTTTCATACCAGA
. : . : . : . : . : . :
rJMSF039H17+ TTTTGATTGGGGTTTCATGGAAGGCAGACAGTGGGGTCGCGGTAAAAGTGGAGGACAAGT
rJMSF021O08+ TTTTGATTGGGGTTTCATGGAAGGCAGACAGTGGGGTCGCGGTAAAAGTGGAGGACAAGT
rJMSF008G07+ TTTTGATTGGGGTTTCATGGAAGGCAGACAGTGGGGTCGCGGTAAAAGTGGAGGACAAGT
____________________________________________________________
consensus TTTTGATTGGGGTTTCATGGAAGGCAGACAGTGGGGTCGCGGTAAAAGTGGAGGACAAGT
. : . : . : . : . : . :
rJMSF039H17+ ACGCGATGAATATCGCACTGATTATGATCCAGGTAGGGGTGGTTATGGAAAGTTGGTGCA
rJMSF021O08+ ACGCGATGAATATCGCACTGATTATGATCCAGGTAGGGGTGGTTATGGAAAGTTGGTGCA
rJMSF008G07+ ACGCGATGAATATCGCACTGATTATGATCCAGGTAGGGGTGGTTATGGAAAGTTGGTGCA
____________________________________________________________
consensus ACGCGATGAATATCGCACTGATTATGATCCAGGTAGGGGTGGTTATGGAAAGTTGGTGCA
. : . : . : . : . : . :
rJMSF039H17+ AAAGGAGTTGGAAGCACAGAGACAACTTGTGGATTATGGTACTGGATCATTGGGCAACTT
rJMSF021O08+ AAAGGAGTTGGAAGCACAGAGACAACTTGTGGATTATGGTACTGGATCATTGGGCAACTT
rJMSF008G07+ AAAGGAGTTGGAAGCACAGAGACAACTTGTGGATTATGGTACTGGATCATTGGGCAACTT
____________________________________________________________
consensus AAAGGAGTTGGAAGCACAGAGACAACTTGTGGATTATGGTACTGGATCATTGGGCAACTT
. : . : . : . : . : . :
rJMSF039H17+ CCCACCTGTTATGGCACCTCAATATGGTCGGCAAGGTGGACATGGGGGTTCTTATCGACA
rJMSF021O08+ CCCACCTGTTATGGCACCTCAATATGGTCGGCAAGGTGGACATGGGGGTTCTTATCGACA
rJMSF008G07+ CCCACCTGTTATGGCACCTCAATATGGTCGGCAAGGTGGACATGGGGGTTCTTATCGACA
____________________________________________________________
consensus CCCACCTGTTATGGCACCTCAATATGGTCGGCAAGGTGGACATGGGGGTTCTTATCGACA
. : . : . : . : . : . :
rJMSF039H17+ TGGCAGAGATTACTATCGCAAGAGGCATCGTGAAGATGATCGCCACAGACTTGATTACTC
rJMSF021O08+ TGGCAGAGATTACTATCGCAAGAGGCATCGTGAAGATGATCGCCACAGACTTGATTACTC
rJMSF008G07+ TGGCAGAGATTACTATCGCAAGAGGCATCGTGAAGATGATCGCCACAGACTTGATTACTC
____________________________________________________________
consensus TGGCAGAGATTACTATCGCAAGAGGCATCGTGAAGATGATCGCCACAGACTTGATTACTC
. : . : . : . : . : . :
rJMSF039H17+ AAAGAGAGTTTACCGCCGTGAACCTGTGAGAGACTCCGACCATGAAGCTCGACCGGAGAA
rJMSF021O08+ AAAGAGAGTTTACCGCCGTGAACCTGTGAGAGACTCCGACCATGAAGCTCGACCGGAGAA
rJMSF008G07+ AAAGAGAGTTTACCGCCGTGAACCTGTGAGAGACTCCGACCATGAAGCTCGACCGGAGAA
____________________________________________________________
consensus AAAGAGAGTTTACCGCCGTGAACCTGTGAGAGACTCCGACCATGAAGCTCGACCGGAGAA
. : . : . : . : . : . :
rJMSF039H17+ GAATCCACGTTTCCGTGAAAGTGGTGACTCCGATGAAGAAGATGACGACGATCAGAAGCA
rJMSF021O08+ GAATCCACGTTTCCGTGAAAGTGGTGACTCCGATGAAGAAGATGACGACGATCAGAAGCA
rJMSF008G07+ GAATCCACGTTTCCGTGAAAGTGGTGACTCCGATGAAGAAGATGACGACGATCAGAAGCA
____________________________________________________________
consensus GAATCCACGTTTCCGTGAAAGTGGTGACTCCGATGAAGAAGATGACGACGATCAGAAGCA
. : . : . : . : . : . :
rJMSF039H17+ ATCCCATTAGTCACTTCCAAGGAATCTCGTTATCGTGTCTAGAGTTTGCGGCCCCTCCCG
rJMSF021O08+ ATCCCATTAGTCACTTCCAAGGAATCTCGTTATCGTGTCTAGAGTTTGCGGCCCCTCCCG
rJMSF008G07+ ATCCCATTAGTCACTTCCAAGGAATCTCGTTATCGTGTCTAGAGTTTGCGGCCCCTCCCG
____________________________________________________________
consensus ATCCCATTAGTCACTTCCAAGGAATCTCGTTATCGTGTCTAGAGTTTGCGGCCCCTCCCG
. : . : . : . : . : . :
rJMSF039H17+ TGGAAAGAAACCTTTCGACTAAGATTTTCTTTCCTATTCCTTCCCATATCTGCCGGGTTG
rJMSF021O08+ TGGAAAGAAACCTTTCGACTAAGATTTTCTTTCCTATTCCTTCCCATATCTGCCGGGTTG
rJMSF008G07+ TGGAAAGAAACCTTTCGACTAAGATTTTCTTTCCTATTCCTTCCCATATCTGCCGGGTTG
____________________________________________________________
consensus TGGAAAGAAACCTTTCGACTAAGATTTTCTTTCCTATTCCTTCCCATATCTGCCGGGTTG
. : . : . : . : . : . :
rJMSF039H17+ TGGCCATTTCATTTTTAGTCGCTTAAAGTAGCATTTCTCTGTATACTGCTTTGCATTACA
rJMSF021O08+ TGGCCATTTCATTTTTAGTCGCTTAAAGTAGCATTTCTCTGTATACTGCTTTGCATTACA
rJMSF008G07+ TGGCCATTTCATTTTTAGTCGCTTAAAGTAGCATTTCTCTGTATACTGCTTTGCATTACA
____________________________________________________________
consensus TGGCCATTTCATTTTTAGTCGCTTAAAGTAGCATTTCTCTGTATACTGCTTTGCATTACA
. : . : . : . : . : . :
rJMSF039H17+ GACTTGCAGATATTGTGTACTGAAAACT
rJMSF021O08+ GACTTGCAGATATTGTGTACTGAAAACT
rJMSF008G07+ GACTTGCAGATATTGTGTACTGAAAACTTGGGTAGAGTTCAGTGATCTAGAGCTGCCTTG
____________________________________________________________
consensus GACTTGCAGATATTGTGTACTGAAAACTTGGGTAGAGTTCAGTGATCTAGAGCTGCCTTG