Contig 008439:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF021I24+                                                      GGAGGAGTTTGTGGAC
                      ____________________________________________________________
consensus                                                         GGAGGAGTTTGTGGAC
 
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rJMSF021I24+          AAGGACGAGTCATTGAGTCAAGAAGATTCGGTTGATGGAGTTGGGTCTTCGCTTCTCTCT
rJMSF007M01+                                                                   TCT
                      ____________________________________________________________
consensus             AAGGACGAGTCATTGAGTCAAGAAGATTCGGTTGATGGAGTTGGGTCTTCGCTTCTCTCT
 
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rJMSF021I24+          GGGTCACTTTCAATGGCTCTCTGCTATATACAAAGGGTGTTTCGTTCAGGGCCACTCCAT
rJMSF007M01+          GGGTCACTTTCTATGGCTCTCTGCTATATACAAAGGGTGTTTCGTTCAGGGCCACTCCAT
                      ____________________________________________________________
consensus             GGGTCACTTTCTATGGCTCTCTGCTATATACAAAGGGTGTTTCGTTCAGGGCCACTCCAT
 
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rJMSF021I24+          CCACAACCGCGGATATTGTGTCTTCACGGATCTCCGGATGGGCCTGGACAATACGTGGCC
rJMSF007M01+          CCACAACCGCGGATATTGTGTCTTCATGGATCTCCGGATGGGCCTGGACAATACGTGGCC
                      ____________________________________________________________
consensus             CCACAACCGCGGATATTGTGTCTTCATGGATCTCCGGATGGGCCTGGACAATACGTGGCC
 
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rJMSF021I24+          ATCATGAATTCAATTTTCTCTGCTCAACGTTCAATGGTACCAATAGATTCATGTGCTATA
rJMSF007M01+          ATCATGAATTCAATTTTCTCTGCTCAACGTTCAATGGTACCAATAGATTCATGTGCTATA
                      ____________________________________________________________
consensus             ATCATGAATTCAATTTTCTCTGCTCAACGTTCAATGGTACCAATAGATTCATGTGCTATA
 
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rJMSF021I24+          GGAGCCCAGCATTCAGCTTTCTTGCAGCAGGCTTCATACATAACTAATGGTGTATATTTG
rJMSF007M01+          GGAGCCCAGCATTCAGCTTTCTTGCAGCAGGCTTCATACATAACTAATGGTGTATATTTG
                      ____________________________________________________________
consensus             GGAGCCCAGCATTCAGCTTTCTTGCAGCAGGCTTCATACATAACTAATGGTGTATATTTG
 
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rJMSF021I24+          AAGCCCCAAATATTAGATGGACTGTTTCAATATCTTTCGACTGTGTTTGCTACTGATTTG
rJMSF007M01+          AAGCCCCAAATATTAGATGGACTGTTTCAATATCTTTCGACTGTGTTTGCTACTGATTTG
                      ____________________________________________________________
consensus             AAGCCCCAAATATTAGATGGACTGTTTCAATATCTTTCGACTGTGTTTGCTACTGATTTG
 
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rJMSF021I24+          CATTCTCGTGCCTTTTTACATCTTCCCAGGCCTGTGGGAGTTGACTTCCGTGCTTCGTGC
rJMSF007M01+          CATTCTCGTGCCTTTTTACATCTTCCCAGGCCTGTGGGAGTTGACTTCCGTGCTTCGTGC
                      ____________________________________________________________
consensus             CATTCTCGTGCCTTTTTACATCTTCCCAGGCCTGTGGGAGTTGACTTCCGTGCTTCGTGC
 
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rJMSF021I24+          TTTTGCCACAAAAATACAATTGACATGGGCTATATATGCTCTGTTTGTTTATCCATTTTC
rJMSF007M01+          TTTTGCCACAAAAATACAATTGACATGGGCTATATATGCTCTGTTTGTTTATCCATTTTC
                      ____________________________________________________________
consensus             TTTTGCCACAAAAATACAATTGACATGGGCTATATATGCTCTGTTTGTTTATCCATTTTC
 
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rJMSF021I24+          TGCAAGCATCAGCCTCAATGCTCGACATGCGGATCGGTTTTTGGTAAGGCTAGAGGACAG
rJMSF007M01+          TGCAAGCATCAGCCTCAATGCTCGACATGCGGATCGGTTTTTGGTAAGGCTAGAGGACAG
                      ____________________________________________________________
consensus             TGCAAGCATCAGCCTCAATGCTCGACATGCGGATCGGTTTTTGGTAAGGCTAGAGGACAG
 
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rJMSF021I24+          GAAC---CTGCACCGTAAGATCAGAAGAAAAGACACTGTGGCTAATGGTCATTTTGGGAG
rJMSF007M01+          GAACCTGCTGCGCCGTAAGATCACAAGAAAAGACAC--TGGCTAATGGTCATTTTGGGAG
                      ____________________________________________________________
consensus             GAACCTGCTGCGCCGTAAGATCAGAAGAAAAGACACTGTGGCTAATGGTCATTTTGGGAG
 
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rJMSF021I24+          GGTGGCTATTTCCTCTTGTTGCTATGATGCTGTTGGTCCCATCACTCAATTCCATTTGTG
rJMSF007M01+          GGTGACTATTTCCTCTTGTTGCTATGATGCTGTTGGTCACATCACTCAATTCCATTTGTG
                      ____________________________________________________________
consensus             GGTGGCTATTTCCTCTTGTTGCTATGATGCTGTTGGTCCCATCACTCAATTCCATTTGTG
 
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rJMSF021I24+          AAGAAGACCTGTTCTGAAGGCTTTTCTTTATGCCCTTTATGGTATGGCTCCATCATTACA
rJMSF007M01+          AAGAAGACCTGTTCTGAAGGCTTTTCTTTATGCCCTTTATGGTATGGCTCCATCATTACA
                      ____________________________________________________________
consensus             AAGAAGACCTGTTCTGAAGGCTTTTCTTTATGCCCTTTATGGTATGGCTCCATCATTACA
 
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rJMSF021I24+          GAATAACCGAAACACTGCTGGAATGCATTTTGCAACCAGACATTT               
rJMSF007M01+          GAATAACCGAAACACTGCTGGAATGCATTTTGCAACCAGACATTTTGCTAATGTAAACTT
                      ____________________________________________________________
consensus             GAATAACCGAAACACTGCTGGAATGCATTTTGCAACCAGACATTTTGCTAATGTAAACTT