Contig 008423:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003F08Sequence330003766 (3)751008423 (3)
JMSF034F20Sequence670003766 (3)708008423 (3)
JMSF037D06Sequence657003766 (3)721008423 (3)

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF034F20+ TCTTTACCCAGATTTTGAACAAAACATTCCTTCATCCATNTGATAG
                      ____________________________________________________________
consensus TCTTTACCCAGATTTTGAACAAAACATTCCTTCATCCATNTGATAG
 
. : . : . : . : . : . :
rJMSF034F20+ ATGCCTCCTTCAAAGGCATAGATGATGAATATACAGACTTTCCAGTCCAAAACATTGGAC
                      ____________________________________________________________
consensus ATGCCTCCTTCAAAGGCATAGATGATGAATATACAGACTTTCCAGTCCAAAACATTGGAC
 
. : . : . : . : . : . :
rJMSF034F20+ CAAACACTATTAAAATTGAAGAACCATTACAGACACAATTGGATCTGGCTCGAGCTAAGA
rJMSF037D06+ AACACTATTAAAATTGAAGAACCNTTACAGACGCAATTGGATCTGGCTCGAGCTAAGA
rJMSF003F08+ CAGACGCAATTGGATCTGGCTCGAGCTAAGA
                      ____________________________________________________________
consensus CAAACACTATTAAAATTGAAGAACCATTACAGACGCAATTGGATCTGGCTCGAGCTAAGA
 
. : . : . : . : . : . :
rJMSF034F20+ TCATTGCCAATGAGTTTGGATGGACAGGAAACAAATTTGCTACTAAAAAACTCCTGAGAG
rJMSF037D06+ TCATTGCCAATGAGTTTGGATGGACAGGAAACAAATTTGCTACTAAAAAACTCCTGAGAG
rJMSF003F08+ TCATTGCCAATGAGTTTGGATGGACAGGAAACAANTTTGCTACTAAAAAACTCCTGAGAG
                      ____________________________________________________________
consensus TCATTGCCAATGAGTTTGGATGGACAGGAAACAAATTTGCTACTAAAAAACTCCTGAGAG
 
. : . : . : . : . : . :
rJMSF034F20+ AGGATAGATTTGCAAAAATTTATTGTGATTCAACCATCGCATCACGATGCTTTTATCCAT
rJMSF037D06+ AGGATAGATTTGCAAAAATTTATTGCGATTCCACCATTGCATCGCGATGCTTTTATCCTT
rJMSF003F08+ AGGATAGATTTGCAAANATTTATTGCGATTCCACCATTGCATCGCGATGCTTTNATCCTT
                      ____________________________________________________________
consensus AGGATAGATTTGCAAAAATTTATTGCGATTCCACCATTGCATCGCGATGCTTTTATCCTT
 
. : . : . : . : . : . :
rJMSF034F20+ TCGATGTTGAACATTCAAGTCCCCGGCTGGTAAACTTATACCGCAAACAATTACAAAGGC
rJMSF037D06+ TCAATGTTGAACATTCAAGACCCCGGCTGGTAAATTTATACCGCAAACAATTACAAAGGC
rJMSF003F08+ TCAATGTTGAACATTCAAGACCCCGGCTGGTAAATTTATACCGCAAACAATTACAAAGGC
                      ____________________________________________________________
consensus TCAATGTTGAACATTCAAGACCCCGGCTGGTAAATTTATACCGCAAACAATTACAAAGGC
 
. : . : . : . : . : . :
rJMSF034F20+ GAGCTAGCTCAGCATTTGGATCAAGACCGTCTTCTTTTGAATCATCCAAAAGGAGGAGAT
rJMSF037D06+ GAGCTAGCTCGGCATTTGGATCAAGACCGTCTTCTTTCGAATCATCCAAAAGAAGGAGAT
rJMSF003F08+ GAGCTAGCTCGGCATTTGGATCAAGACCGTCTTCTTTCGAATCATCCAAAAGAAGGAGAT
                      ____________________________________________________________
consensus GAGCTAGCTCGGCATTTGGATCAAGACCGTCTTCTTTCGAATCATCCAAAAGAAGGAGAT
 
. : . : . : . : . : . :
rJMSF034F20+ GTGAGTGAAAGAAAGAAGATAAGATTTGCTAAATTTTGATAATGAAAACTGGTGAGAAAA
rJMSF037D06+ GTGAGTGAAAGAAAGAAGATAAGATTTGCTAAATTTTGATAATGAAAACTGGTGAGAAAA
rJMSF003F08+ GTGAGTGAAAGAAAGAAGATAAGATTTGCTAAATTTTGATAATGAAAACTGGTGAGAAAA
                      ____________________________________________________________
consensus GTGAGTGAAAGAAAGAAGATAAGATTTGCTAAATTTTGATAATGAAAACTGGTGAGAAAA
 
. : . : . : . : . : . :
rJMSF034F20+ GCAACTGGGAATCTAGATCGCCAACTGAGAATGTATTACAAAGAAG
rJMSF037D06+ GCAACTGGGAATCTAGATCGCCAACTGAGAATGTATTACAAAGAAGTTCAGAAGACTTAA
rJMSF003F08+ GCACCTGGGAATCTAGATCGCCAACTGAGAATGTATTACAAAGAAGTTCAGAAGACTTAA
                      ____________________________________________________________
consensus GCAACTGGGAATCTAGATCGCCAACTGAGAATGTATTACAAAGAAGTTCAGAAGACTTAA
 
. : . : . : . : . : . :
rJMSF037D06+ ATTATCACGAGATTGTATTACAAAGCAGTTCAAAAGGCTCAAAATGAATTATTACAAGAC
rJMSF003F08+ ATTATCACGAGATTGTATTACAAAGCAGTTCAAAAGGCTCAAAATGAATTATTACAAGAC
                      ____________________________________________________________
consensus ATTATCACGAGATTGTATTACAAAGCAGTTCAAAAGGCTCAAAATGAATTATTACAAGAC
 
. : . : . : . : . : . :
rJMSF037D06+ TGTATTACACTAAGAAGCCCAGATCTGCAAGAAATTCAATATGGGTTAACAACTCAAGCT
rJMSF003F08+ TGTATTACACTAAGAAGCCCAGATCTGCAAGAAATTCAATATGGGTTAACANCTCAAGCT
                      ____________________________________________________________
consensus TGTATTACACTAAGAAGCCCAGATCTGCAAGAAATTCAATATGGGTTAACAACTCAAGCT
 
. : . : . : . : . : . :
rJMSF037D06+ TATCAAGGACAGCTGAAACAGAAGAAGATAAGATATGAGACAAGGTAGTGAAGGTACTAT
rJMSF003F08+ TATCAAGGACAGCTGAAACAGANGAAGATAAGATATGGGACAAGGTAGTGAAGGTACTAT
                      ____________________________________________________________
consensus TATCAAGGACAGCTGAAACAGAAGAAGATAAGATATGGGACAAGGTAGTGAAGGTACTAT
 
. : . : . : . : . : . :
rJMSF037D06+ CTCTCTTTAGAAATATCCATGTAAAAATAAAATAAATTAATGTAGCCTAGAGTACCTTTG
rJMSF003F08+ CTCTCTTTAGAAATATCCATGTAAAAATAAAATAAATTAATGTAGCCTAGAGTACCTTTG
                      ____________________________________________________________
consensus CTCTCTTTAGAAATATCCATGTAAAAATAAAATAAATTAATGTAGCCTAGAGTACCTTTG
 
. : . : . : . : . : . :
rJMSF037D06+ TGAAAATTAATGTAGTCTTTATGGCTTTGTAAAATATTTAAATATTATGT
rJMSF003F08+ TGAAAATTAATGTAGTCTTTATGGCTTTGTAAAATATTTAAATATTATGTTGTTCTTGNG
                      ____________________________________________________________
consensus TGAAAATTAATGTAGTCTTTATGGCTTTGTAAAATATTTAAATATTATGTTGTTCTTGNG
 
. : . : . : . : . : . :
rJMSF003F08+ GTTATCTATATAAGGAACCTTTATGTAGCTTTTATGTAGCTGTAAGGGGATAAGGAAAAA
                      ____________________________________________________________
consensus GTTATCTATATAAGGAACCTTTATGTAGCTTTTATGTAGCTGTAAGGGGATAAGGAAAAA