| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF028N23 | Sequence | 473 | 000561 (3) | ref|XP_009779111.1| | 4e-22 | PREDICTED: transcription factor TCP2-like [Nicotiana sylvestris] ref|XP_00977911 | 604 | 008422 (3) | ref|XP_011096599.1| | 2e-09 | PREDICTED: transcription factor TCP2-like [Sesamum indicum] ref|XP_011096600.1| |
| JMSF003D20 | Sequence | 374 | 000561 (3) | 724 | 008422 (3) | ref|XP_011096599.1| | 1e-09 | PREDICTED: transcription factor TCP2-like [Sesamum indicum] ref|XP_011096600.1| | |||
| JMSF031P20 | Sequence | 607 | 000561 (3) | ref|XP_009588487.1| | 7e-44 | PREDICTED: transcription factor TCP24-like isoform X2 [Nicotiana tomentosiformi | 650 | 008422 (3) | ref|XP_011096599.1| | 2e-08 | PREDICTED: transcription factor TCP2-like [Sesamum indicum] ref|XP_011096600.1| |
This contig is upended
. : . : . : . : . : . :
rJMSF003D20+ TTGA
____________________________________________________________
consensus TTGA
. : . : . : . : . : . :
rJMSF031P20+ A
rJMSF003D20+ TTACGTCACCACCGGAGGATTAGCAACCGCCCAACCGTCCTCCCCGGATTTTCCGCCCCA
____________________________________________________________
consensus TTACGTCACCACCGGAGGATTAGCAACCGCCCAACCGTCCTCCCCGGATTTTCCGCCCCA
. : . : . : . : . : . :
rJMFF028N23+ TCCGCCGCCGGTTTTCACTAT
rJMSF031P20+ AGTTCATCTCGGAAACCCTCTACATCTCCCTCCTCCTCCTCCGCCGCCGGTGTTCACTAT
rJMSF003D20+ AGTTCATCTCGGAAACCCTCTACATCTCCCTCCTCCTCCTCCGCCGCCGGTGTTCACTAT
____________________________________________________________
consensus AGTTCATCTCGGAAACCCTCTACATCTCCCTCCTCCTCCTCCGCCGCCGGTGTTCACTAT
. : . : . : . : . : . :
rJMFF028N23+ TCCCGGCGACCACCACCCGGAGCTGCAGAATTTCTCCTTCGTCACCGACCACCGCCACCA
rJMSF031P20+ TCCCGGCGACCACCACCCGGAGCTGCAGAATTTCTCCTTCGTCACCGACCACCGCCACCA
rJMSF003D20+ TCCCGGCGACCACCACCCGGAGCTGCAGAATTTCTCCTTCGTCACCGACCACCGCCACCA
____________________________________________________________
consensus TCCCGGCGACCACCACCCGGAGCTGCAGAATTTCTCCTTCGTCACCGACCACCGCCACCA
. : . : . : . : . : . :
rJMFF028N23+ CCACCACGGCAATCACAACGAATACAATCTAAACTTCAGCATTTCGTCTCCTTCGTCTCA
rJMSF031P20+ CCACCACGGCAATCACAACGAATACAATCTAAACTTCAGCATTTCGTCTCCTTCGTCTCA
rJMSF003D20+ CCACCACGGCAATCACAACGAATACAATCTAAACTTCAGCATTTCGTCTCCTTCGTCTCA
____________________________________________________________
consensus CCACCACGGCAATCACAACGAATACAATCTAAACTTCAGCATTTCGTCTCCTTCGTCTCA
. : . : . : . : . : . :
rJMFF028N23+ TTCGGGCCTTGCTGCTTTTAGGGGGACCCTTCAGTCCAATTCTCCTTCCTCGCCTTCTCT
rJMSF031P20+ TTCGGGCCTTGCTGCTTTTAGGGGGACCCTTCAGTCCAATTCTCCTTCCTCGCCTTCTCT
rJMSF003D20+ TTCGGGCCTTGCTGCTTTTAGGGGGACCCTTCAGTCCAATTCTCCTTCCTCGCCTTCTCT
____________________________________________________________
consensus TTCGGGCCTTGCTGCTTTTAGGGGGACCCTTCAGTCCAATTCTCCTTCCTCGCCTTCTCT
. : . : . : . : . : . :
rJMFF028N23+ CTTGCCTCACCTACAGAGGTTTCCGGCGGCCGTAGACTTAACGCCGGCAAGTTTCTTCAC
rJMSF031P20+ CTTGCCTCACCTACAGAGGTTTCCGGCGGCCGTAGACTTAACGCCGGCAAGTTTCTTCAC
rJMSF003D20+ CTTGCCTCACCTACAGAGGTTTCCGGCGGCCGTAGACTTAACGCCGGCAAGTTTCTTCAC
____________________________________________________________
consensus CTTGCCTCACCTACAGAGGTTTCCGGCGGCCGTAGACTTAACGCCGGCAAGTTTCTTCAC
. : . : . : . : . : . :
rJMFF028N23+ CGCCGCTGCACCCACTGCCCCAGTCGACAACCACCACCACTTCCTCGGATTCGACGCCCG
rJMSF031P20+ CGCCGCTGCACCCACTGCCCCAGTCGACAACCACCACCACTTCCTCGGATTCGACGCCCG
rJMSF003D20+ CGCCGCTGCACCCACTGCCCCAGTCGACAACCACCACCACTTCCTCGGATTCGACGCCCG
____________________________________________________________
consensus CGCCGCTGCACCCACTGCCCCAGTCGACAACCACCACCACTTCCTCGGATTCGACGCCCG
. : . : . : . : . : . :
rJMFF028N23+ TTTGCAGCTCTTCTATGGCGACCACCACGCAGATCATAACGGCAAAGGAAAAACCTGAGC
rJMSF031P20+ TTTGCAGCTCTTCTATGGCGACCACCACGCAGATCATAACGGCAAAGGAAAAACCTGAGC
rJMSF003D20+ TTTGCAGCTCTTCTATGGCGACCACCACGCAGATCATAACGGCAAAGGAAAAACCTGAGC
____________________________________________________________
consensus TTTGCAGCTCTTCTATGGCGACCACCACGCAGATCATAACGGCAAAGGAAAAACCTGAGC
. : . : . : . : . : . :
rJMFF028N23+ TCATAAAAGCTCCGCAGATCTCCTCTCTACCTCATCTTCAAACAAGGTGATTGAAGGTGA
rJMSF031P20+ TCATAAAAGCTCCGCAGATCTCCTCTCTACCTCATCTTCAAACAAGGTGATTGAAGGTGA
rJMSF003D20+ TCATAAAAGCTCCGCAGATCTCCTCTCTACCTCATCTTCAAACAAGGTGATTGAAGGTGA
____________________________________________________________
consensus TCATAAAAGCTCCGCAGATCTCCTCTCTACCTCATCTTCAAACAAGGTGATTGAAGGTGA
. : . : . : . : . : . :
rJMFF028N23+ ATGAATGTACTCAAAAGTCTCAAGTGAAGCAAGCTTCCCTGCCTGCAACTTCTTATTATG
rJMSF031P20+ ATGAATGTACTCAAAAGTCTCAAGTGAAGCAAGCTTCCCTGCCTGCAACTTCTTATTATG
rJMSF003D20+ ATGAATGTACTCAAAAGTCTCAAGTGAAGCAAGCTTCCCTGCCTGCAACTTCTTATTATG
____________________________________________________________
consensus ATGAATGTACTCAAAAGTCTCAAGTGAAGCAAGCTTCCCTGCCTGCAACTTCTTATTATG
. : . : . : . : . : . :
rJMFF028N23+ CTTCTAAAATCATTATTATGATTTCTGGATTTGTTCATTTCAAGCAATTCAGTTCGCATT
rJMSF031P20+ CTTCTAAAATCATTATTATGATTTCTGGATTTGTTCATTTCAAGCAATTCAGTTCGCATT
rJMSF003D20+ CTTCTAAAATCATTATTATGATTTCTGGATTTGTTCATTTCAAGCAATTCAGTTCGCATT
____________________________________________________________
consensus CTTCTAAAATCATTATTATGATTTCTGGATTTGTTCATTTCAAGCAATTCAGTTCGCATT
. : . : . : . : . : . :
rJMFF028N23+ CATGTATTCATGCCTGTCAAGTTGTGTTGTATTTTCT
rJMSF031P20+ CATGTATTCATGCCTGTCAAGTTGTGTTGTATTTTCTTGATATGAAATA
rJMSF003D20+ CATGTATTCATGCCTGTCAAGTTGTGTTGTATTTTCTTGATATGAAATAATGTGTTTGCT
____________________________________________________________
consensus CATGTATTCATGCCTGTCAAGTTGTGTTGTATTTTCTTGATATGAAATAATGTGTTTGCT