Contig 008417:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF002C05Sequence315000396 (15)755008417 (3)ref|XP_010318683.1|5e-117PREDICTED: chaperone protein ClpD, chloroplastic isoform X2 [Solanum lycopersic
JMSF004O08Sequence262006395 (6)343008417 (3)ref|XP_004235865.1|3e-26PREDICTED: chaperone protein ClpD, chloroplastic isoform X1 [Solanum lycopersic
JMSF030P16Sequence639013144 (8)ref|XP_009792236.1|3e-26PREDICTED: chaperone protein ClpD, chloroplastic isoform X2 [Nicotiana sylvestr765008417 (3)ref|XP_010318683.1|1e-116PREDICTED: chaperone protein ClpD, chloroplastic isoform X2 [Solanum lycopersic

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF030P16+ CTGACAGNAGCCATCAGAAGAAAGCCTTTCACGGTTTTGC
rJMSF002C05+ ACAGAAGCCATCAGAAGAAAGCCTTTCACGGTTTTGC
                      ____________________________________________________________
consensus CTGACAGAAGCCATCAGAAGAAAGCCTTTCACGGTTTTGC
 
. : . : . : . : . : . :
rJMSF030P16+ TCCTAGATGAGATTGAAAAGGCACATCCAGACGTATTCAATATTCTCCTTCAGTTATTTG
rJMSF002C05+ TCCTAGATGAGATTGAAAAGGCACATCCAGACGTATTCAATATTCTCCTTCAGTTATTTG
                      ____________________________________________________________
consensus TCCTAGATGAGATTGAAAAGGCACATCCAGACGTATTCAATATTCTCCTTCAGTTATTTG
 
. : . : . : . : . : . :
rJMSF030P16+ AAGATGGTCACCTCACAGACTCTCAGGGGCGAAGGGTTTCGTTTAAGAACACCCTGATTA
rJMSF002C05+ AAGATGGTCACCTCACAGACTCTCAGGGGCGAAGGGTTTCGTTTAAGAACACCCTGATTA
                      ____________________________________________________________
consensus AAGATGGTCACCTCACAGACTCTCAGGGGCGAAGGGTTTCGTTTAAGAACACCCTGATTA
 
. : . : . : . : . : . :
rJMSF030P16+ TCATGACGTCGAATGTTGGTTCAACTGCCATAGTGAAAGGAAGGCAGAATTTCATTGGTT
rJMSF002C05+ TCATGACGTCGAATGTTGGTTCAACTGCCATAGTGAAAGGAAGGCAGAATTTCATTGGTT
                      ____________________________________________________________
consensus TCATGACGTCGAATGTTGGTTCAACTGCCATAGTGAAAGGAAGGCAGAATTTCATTGGTT
 
. : . : . : . : . : . :
rJMSF030P16+ TCATGCTTGCGGATGAAGAATCTACTTCGTATGCTGGAATGAAAGCGTTGGTGATGGAAG
rJMSF002C05+ TCATGCTTGCGGATGAAGAATCTACTTCGTATGCTGGAATGAAAGCGTTGGTGATGGAAG
                      ____________________________________________________________
consensus TCATGCTTGCGGATGAAGAATCTACTTCGTATGCTGGAATGAAAGCGTTGGTGATGGAAG
 
. : . : . : . : . : . :
rJMSF030P16+ AGCTGAAGAACTACTTCCGTCCGGAGTTGCTGAACAGATTAGACGAAGTGGTGGTGTTCC
rJMSF002C05+ AGCTGAAGAACTACTTCCGTCCGGAGTTGCTGAACAGATTAGACGAAGTGGTGGTGTTCC
                      ____________________________________________________________
consensus AGCTGAAGAACTACTTCCGTCCGGAGTTGCTGAACAGATTAGACGAAGTGGTGGTGTTCC
 
. : . : . : . : . : . :
rJMSF030P16+ GTGCTCTAGAGAAGACTCAGATGCTGGAGATACTGAATCTGATGCTGCAGGAGGTGAAAG
rJMSF002C05+ GTGCTCTAGAGAAGACTCAGATGCTGGAGATACTGAATCTGATGCTGCAGGAGGTGAAAG
                      ____________________________________________________________
consensus GTGCTCTAGAGAAGACTCAGATGCTGGAGATACTGAATCTGATGCTGCAGGAGGTGAAAG
 
. : . : . : . : . : . :
rJMSF030P16+ GCAGGCTTGTTTCCATGGGAATAGGGTTGGAAGTAACAGGTGCAACTATGGAGCTGATAT
rJMSF004O08+ GGGAATANGGTTGGAAGTAACAGGTGCAACTATGGAGCTGATAT
rJMSF002C05+ GCAGGCTTGTTTCCATGGGAATAGGGTTGGAAGTAACAGGTGCAACTATGGAGCTGATAT
                      ____________________________________________________________
consensus GCAGGCTTGTTTCCATGGGAATAGGGTTGGAAGTAACAGGTGCAACTATGGAGCTGATAT
 
. : . : . : . : . : . :
rJMSF030P16+ GTGAACAAGGATTTGACAGAAACTACGGCGCCCGACCTCTTAGGAGGGCGCTAACCAGCA
rJMSF004O08+ GTGANCAAGGATTTGACAGAAACTACGGCGCCCGACCTCTTAGGAGGGCGCTAACCAGCA
rJMSF002C05+ GTGAACAAGGATTTGACAGAAACTACGGCGCCCGACCTCTTAGGAGGGCGCTAACCAGCA
                      ____________________________________________________________
consensus GTGAACAAGGATTTGACAGAAACTACGGCGCCCGACCTCTTAGGAGGGCGCTAACCAGCA
 
. : . : . : . : . : . :
rJMSF030P16+ TAATTGAAGACCTCTTGAGTGAGTTTATACTTTCTGGAGATTACAACCCTGGTGATGTTG
rJMSF004O08+ TAATTGAAGACCTCTTGAGTGAGTTTATACTTTCTGGAGATTACAACCCTGGTGATGTTG
rJMSF002C05+ TAATTGAAGACCTCTTGAGTGAGTTTATACTTTCTGGAGATTACAACCCTGGTGATGTTG
                      ____________________________________________________________
consensus TAATTGAAGACCTCTTGAGTGAGTTTATACTTTCTGGAGATTACAACCCTGGTGATGTTG
 
. : . : . : . : . : . :
rJMSF030P16+ CTGTAATTCATTTAGATGATTCCGGGAATCCAATTGTCTCCAACCGATCAAGCCTCA-CC
rJMSF004O08+ CTGTAANTCATTTAGATGATTCCGGGANTCCAATTGTCTCCAACCGATCAAGCCTCATCC
rJMSF002C05+ CTGTAATTCATTTAGATGATTCCGGGAATCCAATTGTCTCCAACCGATCAAGCCTCA-CC
                      ____________________________________________________________
consensus CTGTAATTCATTTAGATGATTCCGGGAATCCAATTGTCTCCAACCGATCAAGCCTCA-CC
 
. : . : . : . : . : . :
rJMSF030P16+ ATGTCT
rJMSF004O08+ ATGTCTGATACAATTACAGCGTTTTNGGAGCACACATGNCGAGTATACATACATAACNAT
rJMSF002C05+ ATGTCTGATACAATTACAGTGTTTTAGGAGCATACATGATGAGTATACATATATAATTAT
                      ____________________________________________________________
consensus ATGTCTGATACAATTACAGTGTTTTAGGAGCATACATGATGAGTATACATATATAATTAT
 
. : . : . : . : . : . :
rJMSF004O08+ TGTTGNTTGTATGTATACGCCAGGACATNCANTCATNTACAGCACTAACATAGACAACC
rJMSF002C05+ TGTTGTTTGTATGTATA-GCCAGGACATTCATTCATGTACAGCACTAAGATAGACAACCT
                      ____________________________________________________________
consensus TGTTGTTTGTATGTATACGCCAGGACATTCATTCATGTACAGCACTAAGATAGACAACCT