Contig 008414:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF013O18Sequence462001622 (3)ref|XP_002325525.2|7e-20hypothetical protein POPTR_0019s10490g [Populus trichocarpa] gb|EEE99906.2| hypo692008414 (5)ref|XP_010667408.1|5e-42PREDICTED: glucuronoxylan 4-O-methyltransferase 3-like [Beta vulgaris subsp. vu
JMFF025L22Sequence543001622 (3)ref|XP_002325525.2|1e-40hypothetical protein POPTR_0019s10490g [Populus trichocarpa] gb|EEE99906.2| hypo679008414 (5)ref|XP_007019817.1|8e-57UvrABC system protein C isoform 1 [Theobroma cacao] gb|EOY17042.1| UvrABC system
JMFF040P18Sequence493008414 (5)emb|CDP00853.1|1e-65unnamed protein product [Coffea canephora]
JMFF051J06Sequence567001622 (3)ref|XP_002325525.2|7e-41hypothetical protein POPTR_0019s10490g [Populus trichocarpa] gb|EEE99906.2| hypo460008414 (5)ref|XP_002526403.1|5e-50conserved hypothetical protein [Ricinus communis] gb|EEF35979.1| conserved hypot
JMSF001L07Sequence624008414 (5)ref|XP_002526403.1|5e-35conserved hypothetical protein [Ricinus communis] gb|EEF35979.1| conserved hypot

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF025L22+ TCNTGGAGGAGGACCGCTCCTGGATCAACCAGATTCA
                      ____________________________________________________________
consensus TCNTGGAGGAGGACCGCTCCTGGATCAACCAGATTCA
 
. : . : . : . : . : . :
rJMFF025L22+ CCGGCAATTACCCTCCCTCGAATCCTACCATGTCACCTATGATACTAAGGTGACTGAGGC
                      ____________________________________________________________
consensus CCGGCAATTACCCTCCCTCGAATCCTACCATGTCACCTATGATACTAAGGTGACTGAGGC
 
. : . : . : . : . : . :
rJMFF040P18+ AGCTCNTGCAAACAGGGGNGAGGGACGATTGCCAGGTCGTCGNCGATCCAAGANC
rJMFF025L22+ GGACGAGCTCTTGCAAACAGGGGCGAGGGACGATTGCCAGGTCGTCGGCGATCCAAGAAC
                      ____________________________________________________________
consensus GGACGAGCTCTTGCAAACAGGGGCGAGGGACGATTGCCAGGTCGTCGGCGATCCAAGAAC
 
. : . : . : . : . : . :
rJMFF040P18+ GTNGAAATG-CCGGCTGGCTCTGAAGGGGTTGCCCAAAGAGGTGTACGAGATAGAGTGGG
rJMFF025L22+ GTCGAAATGCCCGGCTGGCTCTGAAGGGGTTGCCCAAAGAGGTGTACGAGATAGAGTGGG
rJMFF013O18+ CTGAAGGGGTTGCCCAAAGAGGTGTACGAGATAGAGTGGG
                      ____________________________________________________________
consensus GTCGAAATGCCCGGCTGGCTCTGAAGGGGTTGCCCAAAGAGGTGTACGAGATAGAGTGGG
 
. : . : . : . : . : . :
rJMFF051J06+ ATTTGATAATGGTGGACGCGCCGACGGGGTACCACGACGAGGCGCCGGGGAGGATGGCCG
rJMFF040P18+ ATTTGATAATGGTGGACGCGCCGACGGGGTACCANGACGAGGCGCCGGGGAGGATGGCCG
rJMFF025L22+ ATTTGATAATGGTGGACGCGCCGACGGGGTACCACGACGAGGCGCCGGGGAGGATGGCCG
rJMFF013O18+ ATTTGATAATGGTGGACGCGCCGACGGGGTACCACGACGAGGCGCCGGGGAGGATGGCCG
rJMSF001L07+ GACGAGGCGCCGGGGAGGATGGCNG
                      ____________________________________________________________
consensus ATTTGATAATGGTGGACGCGCCGACGGGGTACCACGACGAGGCGCCGGGGAGGATGGCCG
 
. : . : . : . : . : . :
rJMFF051J06+ CCATTTACACCGCCGGAC-TCATCGCCCGGAACCGGGAAGGCGGCGAAACCGACGTCTTT
rJMFF040P18+ CCATTTACACCGCCGGAC-TCATCGCCCGGANCCGGGAAGGCGGCGAAACCGACGTCTTT
rJMFF025L22+ CCATTTACACCGCCGGAC-TCATCGCCCGGAACCGGGAAGGCGGCGAAACCGTCGTCTTT
rJMFF013O18+ CCATTTACACCGCCGGACTTCATCGCCCGGAACCGGGAAGGCGGCGAAACCGACGTCTTT
rJMSF001L07+ CCATNTACACCGCCGGAC-TCATCGCCCGGACCCGGGAAGGCGGCGAAACCGACGTCTTT
                      ____________________________________________________________
consensus CCATTTACACCGCCGGAC-TCATCGCCCGGAACCGGGAAGGCGGCGAAACCGACGTCTTT
 
. : . : . : . : . : . :
rJMFF051J06+ GTTCACGACGTGGATAGGGTTGTGGAAGATAAATTCTCCAAAACTTTTCTTTGCGAAGGG
rJMFF040P18+ GTTCACGACGTGGATAGGGTTGTGGAAGATAAATTCTCCAAAACTTTTNTTTGCGAAGGG
rJMFF025L22+ GTTCACGACGTGGATAGGGTTGTGGAAGATAAATTCTCCAAAACTTTTCTTTGCGAAGGG
rJMFF013O18+ GTTCACGACGTGGATAGGGTTGTGGAAGATAAATTCTCCAAAACTTTTCTTTGCGAAGGG
rJMSF001L07+ GTTCACGACGTGGATAGGGTTGTNGAAGATAAATTCTCCAAAACTNTTCTNTGCGAAGGG
                      ____________________________________________________________
consensus GTTCACGACGTGGATAGGGTTGTGGAAGATAAATTCTCCAAAACTTTTCTTTGCGAAGGG
 
. : . : . : . : . : . :
rJMFF051J06+ TACATGATCGAACAAGAAGGACGGATTCGACATTTCACCATTCCCAGCCATAAAGCTCGC
rJMFF040P18+ TACATGATCGAACAAGAAGGACGGATTCGACATTTCACCATTCCCAGCCATAAAGCTCGC
rJMFF025L22+ TACATGATCGAACAAGAAGGACGGATTCGACATTTCACCATTCCCAGCCATAAAGCTCGC
rJMFF013O18+ TACATGATCGAACAAGAAGGACGGATTCGACATTTCACCATTCCCAGCCATAAAGCTCGC
rJMSF001L07+ TACATGATNGAACAAGAAGGACGGNTTGGACATTTCACCATTCCCAGCCATAAAGCTCGC
                      ____________________________________________________________
consensus TACATGATCGAACAAGAAGGACGGATTCGACATTTCACCATTCCCAGCCATAAAGCTCGC
 
. : . : . : . : . : . :
rJMFF051J06+ GCCGGTAGGCCTTTCTGTCCACCGACATAGATAACAAATTTGCCGGAAATTTTACAGTGT
rJMFF040P18+ GCCGGTAGGCCTTTCTGTCCACCGACATAGATAACAAATTTGCCGGAAATTTTACAGTGT
rJMFF025L22+ GCCGGTAGGCCTTTCTGTCCACCGACATAGATAACAAATTTGCCGGAAATTTTACAGTGT
rJMFF013O18+ GCCGGTAGGCCTTTCTGTCCACCGACATAGATAACAAATTTGCCGGAAATTTTACAGTGT
rJMSF001L07+ GCCGGTAGGCCTTTCTGTCCACCGACATAGATAACAAATTTNCCGGAAATTTTACAGTGT
                      ____________________________________________________________
consensus GCCGGTAGGCCTTTCTGTCCACCGACATAGATAACAAATTTGCCGGAAATTTTACAGTGT
 
. : . : . : . : . : . :
rJMFF051J06+ CGAGGGTTATAAATCTATAATATCGGGTGGTTTGTAGAATTGTACCTTATGCTTTGTAAG
rJMFF040P18+ NGAGGGTTATAAATCTATAATATCGGGTGGTTTGTAGAATTGTACCTTATGCTTTGTAAG
rJMFF025L22+ CGAGGGTTATAAATCTATAATATCGGGTGGTTTGTAGAATTGTACCTTATGCTTTGTAAG
rJMFF013O18+ CGAGGGTTATAAATCTATAATATCGGGTGGTTTGTAGAATTGTACCTTATGCTTTGTAAG
rJMSF001L07+ CGAGGGTTATAAATCTNTAATATCGGGTGGTTTGTAGAATTGTACCTTATGCTNTGTAAG
                      ____________________________________________________________
consensus CGAGGGTTATAAATCTATAATATCGGGTGGTTTGTAGAATTGTACCTTATGCTTTGTAAG
 
. : . : . : . : . : . :
rJMFF051J06+ TTGTACATTTCTTATGTACTTCTGGTAAAGTAAAAGGTACATACGAATTGATAGAAGCAC
rJMFF040P18+ TTGTACATTTCTTATGTACT
rJMFF025L22+ TTGTACATTTCTTATGTACTTCTGGTAAAGTAAAAGGTACATACGAATTGATAGAAGCAC
rJMFF013O18+ TTGTACATTTCTTATGTACTTCTGGTAAAGTAAAAGGTACATACGAATTGATAGAAGCAC
rJMSF001L07+ TTGTACATTTCTTATGTANTTCTGGTAAAGTAAAAGGTACATACGANNTGATAGAAGCAC
                      ____________________________________________________________
consensus TTGTACATTTCTTATGTACTTCTGGTAAAGTAAAAGGTACATACGAATTGATAGAAGCAC
 
. : . : . : . : . : . :
rJMFF051J06+ ACGATATTGTAAAATTTACCGAGGATTTAAAATAATT
rJMFF025L22+ ACGATATTGTAAAATTTACCGAGGATTTAAAATAATT
rJMFF013O18+ ACGATATTGTAAAATTTACCGAGGATTTAAAATAATTTGGGAAAAATTTTACACGGCCGA
rJMSF001L07+ ACGATATTGTAAAATTTACCGAGGATTTAAAATAATTTGGGAAAAATNTTACACGGCCGA
                      ____________________________________________________________
consensus ACGATATTGTAAAATTTACCGAGGATTTAAAATAATTTGGGAAAAATTTTACACGGCCGA
 
. : . : . : . : . : . :
rJMFF013O18+ GGGTTATTTTGTTATAATGTTGGGTGCTTTGTGGGGCTCATTGTACTTTGTGCTTTA-CA
rJMSF001L07+ GGGTTATTTTGTTNTAATGTTGGGTGCTTTGTGGGGCTCNTTGTACTNTGTGCTTTATCA
                      ____________________________________________________________
consensus GGGTTATTTTGTTATAATGTTGGGTGCTTTGTGGGGCTCATTGTACTTTGTGCTTTATCA
 
. : . : . : . : . : . :
rJMFF013O18+ GGTTGTACTTTTTTCTTTGTGCTTCTGGTAAAGCGGAAGGTACAATTTTATAGAGCACAC
rJMSF001L07+ GGTTGTACTTTTTTCTTNGTNCTTCTGGTAAAGCGGAAGGTACAATTTTATAGAGCACAC
                      ____________________________________________________________
consensus GGTTGTACTTTTTTCTTTGTGCTTCTGGTAAAGCGGAAGGTACAATTTTATAGAGCACAC
 
. : . : . : . : . : . :
rJMFF013O18+ AGTATTGTAAAA
rJMSF001L07+ ANTATCGTAAAACNTTGTGGAGGACATTNNTCATGATCTTTTTCAGTAATTTCTAATGAT
                      ____________________________________________________________
consensus AGTATTGTAAAACNTTGTGGAGGACATTNNTCATGATCTTTTTCAGTAATTTCTAATGAT