Contig 008413:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014J22Sequence500000066 (5)ref|XP_009615606.1|6e-52PREDICTED: fasciclin-like arabinogalactan protein 1 [Nicotiana tomentosiformis]215008413 (4)
JMSF001K02Sequence442000066 (5)ref|XP_009615606.1|9e-41PREDICTED: fasciclin-like arabinogalactan protein 1 [Nicotiana tomentosiformis]319008413 (4)
JMSF042M12Sequence719000066 (5)ref|XP_009615606.1|8e-86PREDICTED: fasciclin-like arabinogalactan protein 1 [Nicotiana tomentosiformis]257008413 (4)
JMSF051B17Sequence640000066 (5)ref|XP_009615606.1|1e-73PREDICTED: fasciclin-like arabinogalactan protein 1 [Nicotiana tomentosiformis]266008413 (4)

Alignment

This contig is upended


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rJMSF001K02+ CNNTGGNTTCCCCNGGGGN
                      ____________________________________________________________
consensus CNNTGGNTTCCCCNGGGGN
 
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rJMSF001K02+ AGNNTTNTTNCCCCGGGGGNGNGTNNGGGGGTTNCCNTTTTNCCGCCGNAAATTTTTTTC
                      ____________________________________________________________
consensus AGNNTTNTTNCCCCGGGGGNGNGTNNGGGGGTTNCCNTTTTNCCGCCGNAAATTTTTTTC
 
. : . : . : . : . : . :
rJMSF042M12+ TTTTTTTTTTTTCTTTTTAATTACTGAGTATCTATTTAGAGAGTTCAAATAT
rJMSF051B17+ TTTTTTTTTTTTCTTTTTAATTACTGAGTATCTATTTAGAGAGTTCAAATAT
rJMFF014J22+ TTTTTTTTTTTTCTTTTTAANTACTGAGTATCTATTTAGAGAGTTCAAATAT
rJMSF001K02+ NTTACNNNTTTTTTTTTTTTCTTTTTAATTACTGAGTATCTATTTAGAGAGTTCAAATAT
                      ____________________________________________________________
consensus NTTACNNNTTTTTTTTTTTTCTTTTTAATTACTGAGTATCTATTTAGAGAGTTCAAATAT
 
. : . : . : . : . : . :
rJMSF042M12+ TCAAAAAATGCAAAATAAGTGTGGCCTATACGGCAAAATTGTAATCTTAGGATAGGTAGC
rJMSF051B17+ TCAAAAAATGCAAAATAAGTGTGGCCTATACGGCAAAATTGTAATCTTAGGATAGGTAGC
rJMFF014J22+ TCAAAAAATGCAAAATAAGTGTGGCCTATACGGCAAAATTGTAATCTTAGGATAGGTAGC
rJMSF001K02+ TCAAAAAATGCAAAATAAGTGTGGCCTATACGGCAAAATTGTAATCTTAGGATAGGTAGC
                      ____________________________________________________________
consensus TCAAAAAATGCAAAATAAGTGTGGCCTATACGGCAAAATTGTAATCTTAGGATAGGTAGC
 
. : . : . : . : . : . :
rJMSF042M12+ TTGTCTTCATGCTTTTTGNGTGTTGCTTTTGCTTTTTTCTACNGTTTTTTTTTTCTTTCT
rJMSF051B17+ TTGTCTTCATGCTTTTTGNGTGTTGCTTTTGCTTTTTTCTACNGTTTTTTTTTTCTTTCT
rJMFF014J22+ TTGTCTTCATGCTTTTTGTGTGTTGCTTTTGCTTTTTTCTACNGTNTTTTNTTTCTTTCT
rJMSF001K02+ TTGTCTTCATGCTTTTTGTGTGTTGCTTTTGCTTTTTTCTACTGTTTTTTTTTTCTTTCT
                      ____________________________________________________________
consensus TTGTCTTCATGCTTTTTGTGTGTTGCTTTTGCTTTTTTCTACTGTTTTTTTTTTCTTTCT
 
. : . : . : . : . : . :
rJMSF042M12+ TTTTTAAATTTTGTGTATTAAATATTTATTTGATTTGACTTTCG
rJMSF051B17+ TTTTTAAATTTTGTGTATTAAATATTTATTTGATTTGACTTTCG
rJMFF014J22+ T
rJMSF001K02+ TTTTTAAATTTTGTGTATTAAATATTTATTTGATTTGACTTTNGTAATGAAAAGGGGTTG
                      ____________________________________________________________
consensus TTTTTAAATTTTGTGTATTAAATATTTATTTGATTTGACTTTCGTAATGAAAAGGGGTTG