| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF002D15 | Sequence | 320 | 004803 (6) | 765 | 008396 (6) | ref|XP_006350963.1| | 1e-45 | PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Solanum tu | |||
| JMFF014J08 | Sequence | 541 | 004803 (6) | ref|XP_006350963.1| | 1e-13 | PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Solanum tu | 642 | 008396 (6) | ref|XP_006350963.1| | 2e-34 | PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Solanum tu |
| JMFF017L02 | Sequence | 531 | 004803 (6) | 701 | 008396 (6) | ref|XP_006350963.1| | 3e-38 | PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Solanum tu | |||
| JMFF025C23 | Sequence | 578 | 004803 (6) | ref|XP_006350963.1| | 1e-11 | PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Solanum tu | 614 | 008396 (6) | ref|XP_006350963.1| | 1e-26 | PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Solanum tu |
| JMFF050M19 | Sequence | 575 | 004803 (6) | ref|XP_006350963.1| | 5e-14 | PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Solanum tu | 604 | 008396 (6) | ref|XP_009625680.1| | 2e-29 | PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Nicotiana tomen |
| JMFS045C06 | Sequence | 479 | 008396 (6) | ref|XP_002280682.1| | 1e-41 | PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Vitis vinifera] | |||||
This contig is upended
. : . : . : . : . : . :
JMFS045C06- TACCCGATCACCT
____________________________________________________________
consensus TACCCGATCACCT
. : . : . : . : . : . :
JMFS045C06- ATCTAACGATGCCAAAAATTTTATAAGGCTATGTTTGCAGCGGGACCCGACTGCACGACC
____________________________________________________________
consensus ATCTAACGATGCCAAAAATTTTATAAGGCTATGTTTGCAGCGGGACCCGACTGCACGACC
. : . : . : . : . : . :
JMFS045C06- TACAACGGCACAACTTCTCGAACATCCTTTTACTAAAGACCAAAAGACGGCAAAAGTTGC
rJMFF002D15+ CCAAAAGACGGCAAAAGTTGC
____________________________________________________________
consensus TACAACGGCACAACTTCTCGAACATCCTTTTACTAAAGACCAAAAGACGGCAAAAGTTGC
. : . : . : . : . : . :
JMFS045C06- CCACGCTAACATTATTATTAAGGAACCAAATCCTTCCTCCTTTGATGGAAGCCGTACCCC
rJMFF002D15+ CCACGCTAACATTATTATTAAGGAACCAAATCCTTCCTCCTTTGATGGAAGCCGTACCCC
rJMFF017L02+ TGGAAGCCGTACCCC
____________________________________________________________
consensus CCACGCTAACATTATTATTAAGGAACCAAATCCTTCCTCCTTTGATGGAAGCCGTACCCC
. : . : . : . : . : . :
JMFS045C06- GCCAGCTCTGGATCTACACCCATGCCGGGGATATATGGGGACTCTCGAGGCAGACAATTC
rJMFF002D15+ GCCAGCTCTGGATCTACACCCCTGCCGGGGTTATATGGGGTCTCTCGAGGCAGACAATTC
rJMFF017L02+ GCCAGCTCTGGATCTACACCCCTGCNAGGGTTATATGGGGTCTCTCGAGGCAGACAATTC
____________________________________________________________
consensus GCCAGCTCTGGATCTACACCCCTGCCGGGGTTATATGGGGTCTCTCGAGGCAGACAATTC
. : . : . : . : . : . :
JMFS045C06- TACAAAACCCGTTACTATATCTAGACCCATGATCAGCTCGAGGGAAAGCGCAAGAACCAT
rJMFF002D15+ TACAAAACCCGTTACTATATCTAGACCCATGATCAGCTCGAGGGAAAGCGCAAGAACCAT
rJMFF017L02+ TACAAAACCCGTTACTATATCTAGACCCATGATCAGCTCGAGGGAAAGCGCAAGAACCAT
rJMFF025C23+ TACTATATCTAGACCCATGATCAGCTCGAGGGAAAGCGCAAGAACCAT
rJMFF014J08+ TACAAAACCCGTTACTATATCTAGACCCATGATCAGCTCGAGGGAAAGCGCAAGAACCAT
rJMFF050M19+ ACCAT
____________________________________________________________
consensus TACAAAACCCGTTACTATATCTAGACCCATGATCAGCTCGAGGGAAAGCGCAAGAACCAT
. : . : . : . : . : . :
JMFS045C06- AACTTCAATGCCGGAATCTACCTGATCGAGCCCTCTAATACTGTACATGCCTGCACGCTG
rJMFF002D15+ AACTTCGTTGCCGGTATCTCCCTGTTCGAGCCCTCTAAGACAGTACGAGCCTGCACGCAG
rJMFF017L02+ AACTTCGTTGCCGGTATCTCCCTGTTCGAGCCCTCTAAGACAGTACGAGCCTGCACGCAG
rJMFF025C23+ ANCTTCGTTGCCGGTATCTCCCTGTTCGAGCCCTCTAAGACAGTACGAGCCTGCACGCAG
rJMFF014J08+ AACTTCGTTGCCGGTATCTCCCTGTTCGAGCCCTCTAAGACAGTACGAGCCTGCACGCAG
rJMFF050M19+ AACTTCGTTGCCGGTATCTCCCTGTTCGAGCCCTCTAAGACAGTACGAGCCTGCACGCAG
____________________________________________________________
consensus AACTTCGTTGCCGGTATCTCCCTGTTCGAGCCCTCTAAGACAGTACGAGCCTGCACGCAG
. : . : . : . : . : . :
JMFS045C06- TTGCTGCTATCTCTCCCCACATCACCCGTCGTATCCCCTCATGGGACCAATACGGGTACA
rJMFF002D15+ AAGCTGCTATCTCTCCCCACAACACCCATCGTATCCCCTCATGGG-CCAAAGCGGGTACA
rJMFF017L02+ AAGCTGCTATCTCTCCCCACAACACCCATCGTATCCCCTCATGGG-CCAAAGCGGGTACA
rJMFF025C23+ AAGCTGCTATCTCTCCCCACAACACCCATCGTATCCCCTCATGGG-CCAAAGCGGGTACA
rJMFF014J08+ AAGCTGCTATCTCTCCCCACAACACCCATCGTATCCCCTCATGGG-CCAAAGCGGGTACA
rJMFF050M19+ AAGCTGCTATCTCTCCCCACAACACCCATCGTATCCCCTCATGGG-CCAAAGCGGGTACA
____________________________________________________________
consensus AAGCTGCTATCTCTCCCCACAACACCCATCGTATCCCCTCATGGG-CCAAAGCGGGTACA
. : . : . : . : . : . :
JMFS045C06- ATGTGAACGACTTCTCATCGCTAACAACA
rJMFF002D15+ ATGTGAACGACTACTCAACGCTAACAACAGCAAGGCCGAATACCAGAAGCACGCTAGATC
rJMFF017L02+ ATGTGAACGACTACTCAACGCTAACAACAGCAAGGCCGAATACCAGAAGCACGCTAGATC
rJMFF025C23+ ATGTGAACGACTACTCAACGCTAACAACAGCAAGGCCGAATACCAGAAGCACGCTAGATC
rJMFF014J08+ ATGTGAACGACTACTCAACGCTAACAACAGCAAGGCCGAATACCAGAAGCACGCTAGATC
rJMFF050M19+ ATGTGAACGACTACTCAACGCTAACAACAGCAAGGCCGAATACCAGAAGCACGCTAGATC
____________________________________________________________
consensus ATGTGAACGACTACTCAACGCTAACAACAGCAAGGCCGAATACCAGAAGCACGCTAGATC
. : . : . : . : . : . :
rJMFF002D15+ CATGGCTCGAGATGGCTCAATATCGAGGCCAAACAGCGGGTAGATCCTCGAAAACAAGAC
rJMFF017L02+ CATGGCTCGAGATGGCTCAATATCGAGGCCAAACAGCGGGTAGATCCTCGAAAACAAGAC
rJMFF025C23+ CATGGCTCGAGATGGCTCAATATCGAGGCCAAACAGCGGGTAGATCCTCGAAAACAAGAC
rJMFF014J08+ CATGGCTCGAGATGGCTCAATATCGAGGCCAAACAGCGGGTAGATCCTCGAAAACAAGAC
rJMFF050M19+ CATGGCTCGAGATGGCTCAATATCGAGGCCAAACAGCGGGTAGATCCTCGAAAACAAGAC
____________________________________________________________
consensus CATGGCTCGAGATGGCTCAATATCGAGGCCAAACAGCGGGTAGATCCTCGAAAACAAGAC
. : . : . : . : . : . :
rJMFF002D15+ CCATTCTTTAGACACGACCCCAGAAACACGAGCATGCAATGGGTTTTGCCCTTCTCCGAG
rJMFF017L02+ CCATTCTTTAGACACGACCCCAGAAACACGAGCATGCAATGGGTTTTGCCCTTCTCCGAG
rJMFF025C23+ CCATTCTTTAGACACGACCCCAGAAACACGAGCATGCAATGGGTTTTGCCCTTCTCCGAG
rJMFF014J08+ CCATTCTTTAGACACGACCCCAGAAACACGAGCATGCAATGGGTTTTGCCCTTCTCCGAG
rJMFF050M19+ CCATTCTTTAGACACGACCCCAGAAACACGAGCATGCAATGGGTTTTGCCCTTCTCCGAG
____________________________________________________________
consensus CCATTCTTTAGACACGACCCCAGAAACACGAGCATGCAATGGGTTTTGCCCTTCTCCGAG
. : . : . : . : . : . :
rJMFF002D15+ GGAGATGAACTGCTAGCCGGTGAAGAAATTCAAGAAAAATGGGAATTCGTTTTTTGGGTG
rJMFF017L02+ GGAGATGAACTGCTAGCCGGTGAAGAAATTCAAGAAAAATGGGAATTCGTTTTTTGGGTG
rJMFF025C23+ GGAGATGAACTGCTAGCCGGTGAAGAAATTCAAGAAAAATGGGAATTCGTTTTTTGGGTG
rJMFF014J08+ GGAGATGAACTGCTAGCCGGTGAAGAAATTCAAGAAAAATGGGAATTCGTTTTTTGGGTG
rJMFF050M19+ GGAGATGAACTGCTAGCCGGTGAAGAAATTCAAGAAAAATGGGAATTCGTTTTTTGGGTG
____________________________________________________________
consensus GGAGATGAACTGCTAGCCGGTGAAGAAATTCAAGAAAAATGGGAATTCGTTTTTTGGGTG
. : . : . : . : . : . :
rJMFF002D15+ ATCATGCGGCATTCGTTCCCCGGTCCCGGTGGCTGTAATCTGTAAAGATCACATCTTTTT
rJMFF017L02+ ATCATGCGGCATTCGTTCCCCGGTCCCGGTGGCTGTAATCTGTAAAGATCACATCTTTTT
rJMFF025C23+ ATCATGCGGCATTCGTTCCCCGGTCCCGGTGGCTGTAATNTGTAAAGATCACATCTTTTT
rJMFF014J08+ ATCATGCGGCATTCGTTCCCCGGTCCCGGTGGCTGTAATCTGTAAAGATCACATCTTTTT
rJMFF050M19+ ATCATGCGGCATTCGTTCCCCGGTCCCGGTGGCTGTAATCTGTAAAGATCACATCTTTTT
____________________________________________________________
consensus ATCATGCGGCATTCGTTCCCCGGTCCCGGTGGCTGTAATCTGTAAAGATCACATCTTTTT
. : . : . : . : . : . :
rJMFF002D15+ TGTTGCTAAATGTAAATAAAATGTGTAATCTTGGGAGTTGGTAAATGTAGTAGGAGTGGG
rJMFF017L02+ TGTTGCTAAATGTAAATAAAATGTGTAATCTTGGGAGTTGGTAAATGTAGTAGGAGTGGG
rJMFF025C23+ TGTTGCTAAATGTAAATAAAATGTGTAATCTTGGGAGTTGGTAAATGTAGTAGGAGTGGG
rJMFF014J08+ TGTTGCTAAATGTAAATAAAATGTGTAATCTTGGGAGTTGGTAAATGTAGTAGGAGTGGG
rJMFF050M19+ TGTTGCTAAATGTAAATAAAATGTGTAATCTTGGGAGTTGGTAAATGTAGTAGGAGTGGG
____________________________________________________________
consensus TGTTGCTAAATGTAAATAAAATGTGTAATCTTGGGAGTTGGTAAATGTAGTAGGAGTGGG
. : . : . : . : . : . :
rJMFF002D15+ TGAGATTTGGTGTACTCACAAGCCACAAGTCATGCATATATAGCGATATATACAGACTTG
rJMFF017L02+ TGAGATTTGGTGTACTCACAAGCCACAAGTCATGCATATATAGCGATATATACAGACTTG
rJMFF025C23+ TGAGATTTGGTGTACTCACAAGCCACAAGTCATGCATATATAGCGATATATACAGACTTG
rJMFF014J08+ TGAGATTTGGTGTACTCACAAGCCACAAGTCATGCATATATAGCGATATATACAGACTTG
rJMFF050M19+ TGAGATTTGGTGTACTCACAAGCCACAAGTCATGCATATATAGCGATATATACAGACTTG
____________________________________________________________
consensus TGAGATTTGGTGTACTCACAAGCCACAAGTCATGCATATATAGCGATATATACAGACTTG
. : . : . : . : . : . :
rJMFF002D15+ GAAAAACATTTCCTGTAATCCAGAT
rJMFF017L02+ GAAAAACATTTCCTGTAATCCAGATTC
rJMFF025C23+ GAAAAACATTTCCNGTAATCCAGATTC
rJMFF014J08+ GAAAAACATTTCCTGTAATCCAGATTCAGGTT
rJMFF050M19+ GAAAAACATTTCCTGTAATCCAGATTCAGGTTTCAAAAAAAAAAAAAAACTCTCCAGGGT
____________________________________________________________
consensus GAAAAACATTTCCTGTAATCCAGATTCAGGTTTCAAAAAAAAAAAAAAACTCTCCAGGGT