Contig 008392:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF008B24Sequence797008392 (2)ref|XP_006342140.1|2e-72PREDICTED: niemann-Pick C1 protein-like [Solanum tuberosum]
JMFF050J04Sequence642010509 (7)ref|XP_009790333.1|1e-83PREDICTED: LOW QUALITY PROTEIN: Niemann-Pick C1 protein-like [Nicotiana sylvest580008392 (2)ref|XP_009790333.1|7e-34PREDICTED: LOW QUALITY PROTEIN: Niemann-Pick C1 protein-like [Nicotiana sylvest

Alignment

This contig is upended


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rJMFF008B24+                                 GCCTTGCCATTGCTATTGGTGCAGTCTTTCTNGTATG
                      ____________________________________________________________
consensus                                    GCCTTGCCATTGCTATTGGTGCAGTCTTTCTNGTATG
 
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rJMFF008B24+          CTTAATCATCACATGCAGTTTTTGGACTTCGGCAATCATCTTACTTGTGTTGGCAATGAT
                      ____________________________________________________________
consensus             CTTAATCATCACATGCAGTTTTTGGACTTCGGCAATCATCTTACTTGTGTTGGCAATGAT
 
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rJMFF008B24+          TGTTCTGGATATAATGGGCGTAATGGCGATCCTGAATATCCAACTAAATGCAGTCTCTGT
                      ____________________________________________________________
consensus             TGTTCTGGATATAATGGGCGTAATGGCGATCCTGAATATCCAACTAAATGCAGTCTCTGT
 
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rJMFF008B24+          TGTTAACCTTGTAATGTCAGTGGGTATTGCGGTGGAGTTTTGTGTGCACATCACACATGC
                      ____________________________________________________________
consensus             TGTTAACCTTGTAATGTCAGTGGGTATTGCGGTGGAGTTTTGTGTGCACATCACACATGC
 
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rJMFF008B24+          TTTCTTGGTAGCCAGCGGAGACAGGAACCAACGCATGAAGGAGGCGTTGACCACTATGGG
rJMFF050J04+                              ACAGGAACCAACGCATGAAGGAGGCGTTGACCACTATGGG
                      ____________________________________________________________
consensus             TTTCTTGGTAGCCAGCGGAGACAGGAACCAACGCATGAAGGAGGCGTTGACCACTATGGG
 
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rJMFF008B24+          GGCTTCTGTATTCAGTGGCATCACACTTACTAAGCTAGTTGGGGTGCTTGTTCTTTGTTT
rJMFF050J04+          GGCTTCTGTATTCAGTGGCATCACACTTACTAAGCTAGTTGGGGTGCTTGTTCTTTGTTT
                      ____________________________________________________________
consensus             GGCTTCTGTATTCAGTGGCATCACACTTACTAAGCTAGTTGGGGTGCTTGTTCTTTGTTT
 
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rJMFF008B24+          CTCGAGGACAGAAGTTTTTGTGGTTTACTACTTCCAAATGTACCTGGCTTTGGTTATTCT
rJMFF050J04+          CTCGAGGACAGAAGTTTTTGTGGTTTACTACTTCCAAATGTACCTGGCTTTGGTTATTCT
                      ____________________________________________________________
consensus             CTCGAGGACAGAAGTTTTTGTGGTTTACTACTTCCAAATGTACCTGGCTTTGGTTATTCT
 
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rJMFF008B24+          TGGCTTTCTGCATGGTCTAGTCCTTTTACCTGTATTACTGAGCATGTTCGGTCCGCCATC
rJMFF050J04+          TGGCTTTCTGCATGGTCTAGTCCTTTTACCTGTATTACTGAGCATGTTCGGTCCGCCATC
                      ____________________________________________________________
consensus             TGGCTTTCTGCATGGTCTAGTCCTTTTACCTGTATTACTGAGCATGTTCGGTCCGCCATC
 
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rJMFF008B24+          AAGGTGCGTGCTTGTGGAGAAGCAAGAGAGTCACCCATCTACATCCTCGCAGATCTAATC
rJMFF050J04+          AAGGTGCGTGCTTGTGGAGAAGCAAGAGAGTCACCCATCTACATCCTCGCAGATTTAATC
                      ____________________________________________________________
consensus             AAGGTGCGTGCTTGTGGAGAAGCAAGAGAGTCACCCATCTACATCCTCGCAGATTTAATC
 
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rJMFF008B24+          GATCGAGAACCATGTAAGGCTAACTTTTGTAGGATTCAGAGGCCTTGCTCCCTCCCCTTT
rJMFF050J04+          GATCGAGAACCATGTAAGGCTAACTTTTGTAGGATTCAGAGGCCTTGCTCCCTCCCCTTT
                      ____________________________________________________________
consensus             GATCGAGAACCATGTAAGGCTAACTTTTGTAGGATTCAGAGGCCTTGCTCCCTCCCCTTT
 
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rJMFF008B24+          GGAAGAGAAGCAAAATCAGTCCATTGGAATACTGTTGAAATGTAAAATATAACTTTAAAG
rJMFF050J04+          GGAAGAGAAGCAAAATCAGTCCATTGGAATACTGTTGAAATGTAAAATATAACTTTAAAG
                      ____________________________________________________________
consensus             GGAAGAGAAGCAAAATCAGTCCATTGGAATACTGTTGAAATGTAAAATATAACTTTAAAG
 
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rJMFF008B24+          GTTCAATGAAAGGGGGGACTGGTATACAAGTCAGTTCTTTTTCCTGTCTCTACTGTGTAA
rJMFF050J04+          GTTCAATGAAAGGGGGGACTGGTATACAAGTCAGTTCTTTTTCCTGTCTCTACTGTGTAA
                      ____________________________________________________________
consensus             GTTCAATGAAAGGGGGGACTGGTATACAAGTCAGTTCTTTTTCCTGTCTCTACTGTGTAA
 
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rJMFF008B24+          AACTGCATAGGTTTGGTTACAGTCTTACAGAACATTTTCTAAGAGTTGTATATAATGTAC
rJMFF050J04+          AACTGCATAGGTATGGTTACAGTCTTACAGAACATTTTCTAAGAGTTGTATATAATGTAC
                      ____________________________________________________________
consensus             AACTGCATAGGTTTGGTTACAGTCTTACAGAACATTTTCTAAGAGTTGTATATAATGTAC
 
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rJMFF008B24+          TATCCCTTACCTATTTTACTTGCTTT                                  
rJMFF050J04+          TATCCCTTACCTATTTTACTTGCTTTTGGAATGTCAAGAAAATTTCAGCAAAAAAAAAAG
                      ____________________________________________________________
consensus             TATCCCTTACCTATTTTACTTGCTTTTGGAATGTCAAGAAAATTTCAGCAAAAAAAAAAG