Contig 008384:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF049E02Sequence645003702 (2)ref|XP_009613228.1|1e-66PREDICTED: pentatricopeptide repeat-containing protein At2g15630, mitochondrial609008384 (2)
JMSF026H14Sequence586003702 (2)ref|XP_009613228.1|9e-50PREDICTED: pentatricopeptide repeat-containing protein At2g15630, mitochondrial780008384 (2)ref|XP_006346504.1|9e-34PREDICTED: pentatricopeptide repeat-containing protein At2g15630, mitochondrial

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF026H14+ GGTACAGTAGGAGA
                      ____________________________________________________________
consensus GGTACAGTAGGAGA
 
. : . : . : . : . : . :
rJMSF026H14+ GGCGATATGGAGGATGCATTTAGAGTACGAGATGTGATGCTAGGTTTAGGATTTAGCCCC
                      ____________________________________________________________
consensus GGCGATATGGAGGATGCATTTAGAGTACGAGATGTGATGCTAGGTTTAGGATTTAGCCCC
 
. : . : . : . : . : . :
rJMSF026H14+ ACCCTTCTCACCTACAATGCACTTATACAAGGCTTATGCAAAACCAAGCAAGGTAATGCT
                      ____________________________________________________________
consensus ACCCTTCTCACCTACAATGCACTTATACAAGGCTTATGCAAAACCAAGCAAGGTAATGCT
 
. : . : . : . : . : . :
rJMSF026H14+ GCTGAGGAACTTCTCAAAGAAATGGCTAGTAAAGGCATTACTCCTGATGACAATACATAT
                      ____________________________________________________________
consensus GCTGAGGAACTTCTCAAAGAAATGGCTAGTAAAGGCATTACTCCTGATGACAATACATAT
 
. : . : . : . : . : . :
rJMSF026H14+ CTTTCTTTAATTGAAGGGATTGGGGATGTTAATGTTTTCTTGGGGAAACAAGATCCATTA
                      ____________________________________________________________
consensus CTTTCTTTAATTGAAGGGATTGGGGATGTTAATGTTTTCTTGGGGAAACAAGATCCATTA
 
. : . : . : . : . : . :
rJMSF026H14+ TGAATATCTTACAGTTTACCTTTTATGAGAAGGCAAGCAAATATCTAATGTGAATGGTCA
rJMFF049E02+ GAATGGTCA
                      ____________________________________________________________
consensus TGAATATCTTACAGTTTACCTTTTATGAGAAGGCAAGCAAATATCTAATGTGAATGGTCA
 
. : . : . : . : . : . :
rJMSF026H14+ TTGATGCCAAAATACCAAAGCCTCTATAGGTATTGCCTTCAGTGATTCTCACATCGGCTG
rJMFF049E02+ TTGATGCCAAAATACCAAAGCCTCTATAGGTATTGCCTTCAGTGATTCTCACATCGGCTG
                      ____________________________________________________________
consensus TTGATGCCAAAATACCAAAGCCTCTATAGGTATTGCCTTCAGTGATTCTCACATCGGCTG
 
. : . : . : . : . : . :
rJMSF026H14+ CTTTTGCTATCTCTAAGCAAGATCCCTCGTGTATTTGAAATATGGGGTATACTATATCCA
rJMFF049E02+ CTTTTGCTATCTCTAAGCAAGATCCCTCGTGTATTTGAAATATGGGGTATACTATATCCA
                      ____________________________________________________________
consensus CTTTTGCTATCTCTAAGCAAGATCCCTCGTGTATTTGAAATATGGGGTATACTATATCCA
 
. : . : . : . : . : . :
rJMSF026H14+ AAGGCAGTGGAGGTAAAGCAAGATGAAACACTACTCCACTTTAAAGAGCTTCACATTGGT
rJMFF049E02+ AAGGCAGTGGAGGTAAAGCAAGATGAAACACTACTCCACTTTAAAGAGCTTCACATTGGT
                      ____________________________________________________________
consensus AAGGCAGTGGAGGTAAAGCAAGATGAAACACTACTCCACTTTAAAGAGCTTCACATTGGT
 
. : . : . : . : . : . :
rJMSF026H14+ GGCCCTTCAAATTAAGGCTATCCTGTTCTTGAATATTTAATGGCAAGGGTCCTTGTAAGA
rJMFF049E02+ GGCCCTTCAAATTAAGGCTATCCTGTTCTTGAATATTTAATGGCAAGGGTCCTTGTAAGA
                      ____________________________________________________________
consensus GGCCCTTCAAATTAAGGCTATCCTGTTCTTGAATATTTAATGGCAAGGGTCCTTGTAAGA
 
. : . : . : . : . : . :
rJMSF026H14+ CAGTACAGGGAACTCCAGCTTTGTTCAAGCACCAGAAGGAACACTGATCATCACATCATG
rJMFF049E02+ CAGTACAGGGAACTCCAGCTTTGTTCAAGCACCAGAAGGAACACTGATCATCACATCATG
                      ____________________________________________________________
consensus CAGTACAGGGAACTCCAGCTTTGTTCAAGCACCAGAAGGAACACTGATCATCACATCATG
 
. : . : . : . : . : . :
rJMSF026H14+ TTTAAGTGAAGCTAAAGGACATATGCAGAATATAGGCAATGATATTTATCTTTCAGCATA
rJMFF049E02+ TTTAAGTGAAGCTAAAGGACATATGCAGAATATAGGCAATGATATTTATCTTTCAGCATA
                      ____________________________________________________________
consensus TTTAAGTGAAGCTAAAGGACATATGCAGAATATAGGCAATGATATTTATCTTTCAGCATA
 
. : . : . : . : . : . :
rJMSF026H14+ AAGATGGTATCTTTTTAACAAAAGCCATTTGGTTATGCTAAGAAATTTCTTCTACAAATT
rJMFF049E02+ AAGATGGTATCTTTTTAACAAAAGCCATTTGGTTATGCTAAGAAATTTCTTCTACAAATT
                      ____________________________________________________________
consensus AAGATGGTATCTTTTTAACAAAAGCCATTTGGTTATGCTAAGAAATTTCTTCTACAAATT
 
. : . : . : . : . : . :
rJMSF026H14+ GTATTGCATGACTTTGTCATCACCATGTTACACTGATTTCAAATAT
rJMFF049E02+ GTATTGCATGACTTTGTCATCACCATGTTACACTGATTTCAAATATTCATATTATAATTC
                      ____________________________________________________________
consensus GTATTGCATGACTTTGTCATCACCATGTTACACTGATTTCAAATATTCATATTATAATTC
 
. : . : . : . : . : . :
rJMFF049E02+ AGGGCAATGACATTCTCTATTCAATTTGAAGTTTGAGTATCCATAACTCTTAGAGTTAAT
                      ____________________________________________________________
consensus AGGGCAATGACATTCTCTATTCAATTTGAAGTTTGAGTATCCATAACTCTTAGAGTTAAT
 
. : . : . : . : . : . :
rJMFF049E02+ TCCAGAAATAGTCTCTTGACTATTGACATTTATCAATTTTTATCCCCGACTTTCAATTGG
                      ____________________________________________________________
consensus TCCAGAAATAGTCTCTTGACTATTGACATTTATCAATTTTTATCCCCGACTTTCAATTGG