clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF049E02 | Sequence | 645 | 003702 (2) | ref|XP_009613228.1| | 1e-66 | PREDICTED: pentatricopeptide repeat-containing protein At2g15630, mitochondrial | 609 | 008384 (2) | |||
JMSF026H14 | Sequence | 586 | 003702 (2) | ref|XP_009613228.1| | 9e-50 | PREDICTED: pentatricopeptide repeat-containing protein At2g15630, mitochondrial | 780 | 008384 (2) | ref|XP_006346504.1| | 9e-34 | PREDICTED: pentatricopeptide repeat-containing protein At2g15630, mitochondrial |
This contig is upended
. : . : . : . : . : . :
rJMSF026H14+ GGTACAGTAGGAGA
____________________________________________________________
consensus GGTACAGTAGGAGA
. : . : . : . : . : . :
rJMSF026H14+ GGCGATATGGAGGATGCATTTAGAGTACGAGATGTGATGCTAGGTTTAGGATTTAGCCCC
____________________________________________________________
consensus GGCGATATGGAGGATGCATTTAGAGTACGAGATGTGATGCTAGGTTTAGGATTTAGCCCC
. : . : . : . : . : . :
rJMSF026H14+ ACCCTTCTCACCTACAATGCACTTATACAAGGCTTATGCAAAACCAAGCAAGGTAATGCT
____________________________________________________________
consensus ACCCTTCTCACCTACAATGCACTTATACAAGGCTTATGCAAAACCAAGCAAGGTAATGCT
. : . : . : . : . : . :
rJMSF026H14+ GCTGAGGAACTTCTCAAAGAAATGGCTAGTAAAGGCATTACTCCTGATGACAATACATAT
____________________________________________________________
consensus GCTGAGGAACTTCTCAAAGAAATGGCTAGTAAAGGCATTACTCCTGATGACAATACATAT
. : . : . : . : . : . :
rJMSF026H14+ CTTTCTTTAATTGAAGGGATTGGGGATGTTAATGTTTTCTTGGGGAAACAAGATCCATTA
____________________________________________________________
consensus CTTTCTTTAATTGAAGGGATTGGGGATGTTAATGTTTTCTTGGGGAAACAAGATCCATTA
. : . : . : . : . : . :
rJMSF026H14+ TGAATATCTTACAGTTTACCTTTTATGAGAAGGCAAGCAAATATCTAATGTGAATGGTCA
rJMFF049E02+ GAATGGTCA
____________________________________________________________
consensus TGAATATCTTACAGTTTACCTTTTATGAGAAGGCAAGCAAATATCTAATGTGAATGGTCA
. : . : . : . : . : . :
rJMSF026H14+ TTGATGCCAAAATACCAAAGCCTCTATAGGTATTGCCTTCAGTGATTCTCACATCGGCTG
rJMFF049E02+ TTGATGCCAAAATACCAAAGCCTCTATAGGTATTGCCTTCAGTGATTCTCACATCGGCTG
____________________________________________________________
consensus TTGATGCCAAAATACCAAAGCCTCTATAGGTATTGCCTTCAGTGATTCTCACATCGGCTG
. : . : . : . : . : . :
rJMSF026H14+ CTTTTGCTATCTCTAAGCAAGATCCCTCGTGTATTTGAAATATGGGGTATACTATATCCA
rJMFF049E02+ CTTTTGCTATCTCTAAGCAAGATCCCTCGTGTATTTGAAATATGGGGTATACTATATCCA
____________________________________________________________
consensus CTTTTGCTATCTCTAAGCAAGATCCCTCGTGTATTTGAAATATGGGGTATACTATATCCA
. : . : . : . : . : . :
rJMSF026H14+ AAGGCAGTGGAGGTAAAGCAAGATGAAACACTACTCCACTTTAAAGAGCTTCACATTGGT
rJMFF049E02+ AAGGCAGTGGAGGTAAAGCAAGATGAAACACTACTCCACTTTAAAGAGCTTCACATTGGT
____________________________________________________________
consensus AAGGCAGTGGAGGTAAAGCAAGATGAAACACTACTCCACTTTAAAGAGCTTCACATTGGT
. : . : . : . : . : . :
rJMSF026H14+ GGCCCTTCAAATTAAGGCTATCCTGTTCTTGAATATTTAATGGCAAGGGTCCTTGTAAGA
rJMFF049E02+ GGCCCTTCAAATTAAGGCTATCCTGTTCTTGAATATTTAATGGCAAGGGTCCTTGTAAGA
____________________________________________________________
consensus GGCCCTTCAAATTAAGGCTATCCTGTTCTTGAATATTTAATGGCAAGGGTCCTTGTAAGA
. : . : . : . : . : . :
rJMSF026H14+ CAGTACAGGGAACTCCAGCTTTGTTCAAGCACCAGAAGGAACACTGATCATCACATCATG
rJMFF049E02+ CAGTACAGGGAACTCCAGCTTTGTTCAAGCACCAGAAGGAACACTGATCATCACATCATG
____________________________________________________________
consensus CAGTACAGGGAACTCCAGCTTTGTTCAAGCACCAGAAGGAACACTGATCATCACATCATG
. : . : . : . : . : . :
rJMSF026H14+ TTTAAGTGAAGCTAAAGGACATATGCAGAATATAGGCAATGATATTTATCTTTCAGCATA
rJMFF049E02+ TTTAAGTGAAGCTAAAGGACATATGCAGAATATAGGCAATGATATTTATCTTTCAGCATA
____________________________________________________________
consensus TTTAAGTGAAGCTAAAGGACATATGCAGAATATAGGCAATGATATTTATCTTTCAGCATA
. : . : . : . : . : . :
rJMSF026H14+ AAGATGGTATCTTTTTAACAAAAGCCATTTGGTTATGCTAAGAAATTTCTTCTACAAATT
rJMFF049E02+ AAGATGGTATCTTTTTAACAAAAGCCATTTGGTTATGCTAAGAAATTTCTTCTACAAATT
____________________________________________________________
consensus AAGATGGTATCTTTTTAACAAAAGCCATTTGGTTATGCTAAGAAATTTCTTCTACAAATT
. : . : . : . : . : . :
rJMSF026H14+ GTATTGCATGACTTTGTCATCACCATGTTACACTGATTTCAAATAT
rJMFF049E02+ GTATTGCATGACTTTGTCATCACCATGTTACACTGATTTCAAATATTCATATTATAATTC
____________________________________________________________
consensus GTATTGCATGACTTTGTCATCACCATGTTACACTGATTTCAAATATTCATATTATAATTC
. : . : . : . : . : . :
rJMFF049E02+ AGGGCAATGACATTCTCTATTCAATTTGAAGTTTGAGTATCCATAACTCTTAGAGTTAAT
____________________________________________________________
consensus AGGGCAATGACATTCTCTATTCAATTTGAAGTTTGAGTATCCATAACTCTTAGAGTTAAT
. : . : . : . : . : . :
rJMFF049E02+ TCCAGAAATAGTCTCTTGACTATTGACATTTATCAATTTTTATCCCCGACTTTCAATTGG
____________________________________________________________
consensus TCCAGAAATAGTCTCTTGACTATTGACATTTATCAATTTTTATCCCCGACTTTCAATTGG