| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF002N14 | Sequence | 592 | 007278 (10) | ref|XP_010110710.1| | 6e-47 | Cadmium/zinc-transporting ATPase 3 [Morus notabilis] gb|EXC27875.1| Cadmium/zinc | 762 | 008383 (6) | ref|XP_009605987.1| | 2e-05 | PREDICTED: cadmium/zinc-transporting ATPase HMA2-like isoform X1 [Nicotiana tom |
| JMFF020M23 | Sequence | 560 | 008383 (6) | ||||||||
| JMFF038B18 | Sequence | 506 | 007278 (10) | ref|XP_006360252.1| | 4e-53 | PREDICTED: cadmium/zinc-transporting ATPase HMA2-like [Solanum tuberosum] | 682 | 008383 (6) | ref|XP_010656780.1| | 1e-05 | PREDICTED: putative inactive cadmium/zinc-transporting ATPase HMA3 [Vitis vinif |
| JMFF046K17 | Sequence | 606 | 007278 (10) | gb|EYU25729.1| | 2e-72 | hypothetical protein MIMGU_mgv1a000994mg [Erythranthe guttata] | 338 | 008383 (6) | |||
| JMFF049A15 | Sequence | 524 | 007278 (10) | gb|ACC68169.1| | 6e-40 | Zn/Cd P(IB)-type ATPase [Arabidopsis halleri subsp. halleri] | 568 | 008383 (6) | ref|XP_009605988.1| | 2e-06 | PREDICTED: cadmium/zinc-transporting ATPase HMA3-like isoform X2 [Nicotiana tom |
| JMSF039I12 | Sequence | 688 | 007278 (10) | ref|XP_010110710.1| | 9e-53 | Cadmium/zinc-transporting ATPase 3 [Morus notabilis] gb|EXC27875.1| Cadmium/zinc | 777 | 008383 (6) | gb|AFD32368.1| | 1e-09 | HMA2 transporter [Sedum alfredii] |
This contig is upended
. : . : . : . : . : . :
rJMSF039I12+ CTGGCACTGGCCATTTCAGGCCACCCCTTCGTTTGGGCTGCA
____________________________________________________________
consensus CTGGCACTGGCCATTTCAGGCCACCCCTTCGTTTGGGCTGCA
. : . : . : . : . : . :
rJMSF039I12+ GTTTTTGCCGATGTTGGGTCTTGCTTGATTGTCATCTTCAACAGCTTGCTCCTTCTCCGA
____________________________________________________________
consensus GTTTTTGCCGATGTTGGGTCTTGCTTGATTGTCATCTTCAACAGCTTGCTCCTTCTCCGA
. : . : . : . : . : . :
rJMSF039I12+ GGACGAAGAACACCGCATTCACACACACATAAACATGGACACAAATGTTGTAGTAGTAGT
rJMFF002N14+ CACAAATGTTGTAGTAGTAGT
____________________________________________________________
consensus GGACGAAGAACACCGCATTCACACACACATAAACATGGACACAAATGTTGTAGTAGTAGT
. : . : . : . : . : . :
rJMSF039I12+ AGTACTAAATCTTGTTCTTCTGTTTCACAACATA-CCCACCAACACTGCAAATCCTCCCA
rJMFF038B18+ A
rJMFF002N14+ AGTACTAAATCTTGTTCTTCTGTTTCACAACATACCCCACCAACACTGCAAATCCTCCCA
____________________________________________________________
consensus AGTACTAAATCTTGTTCTTCTGTTTCACAACATACCCCACCAACACTGCAAATCCTCCCA
. : . : . : . : . : . :
rJMSF039I12+ TACAGATCATCAGTCACAGTGCCCAGAATCTACCGGCAAGAA-GGGCTGTCATTCTCATG
rJMFF038B18+ TACAGATCATCAGTCACAGTGCCCAGAATCTACCGGCAAGAAGGGGCTGTCATTCTCATG
rJMFF002N14+ TACAGATCATCAGTCACAGTGCCCAGAATCTACCGGCAAGAA-GGGCTGTCATTCTCATG
____________________________________________________________
consensus TACAGATCATCAGTCACAGTGCCCAGAATCTACCGGCAAGAA-GGGCTGTCATTCTCATG
. : . : . : . : . : . :
rJMSF039I12+ ATAATTCCCACCCACAAATGGAGTTGGGTAAGGCAAGCTTTTCCATGGGCACTCAAGATA
rJMFF020M23+ AGATA
rJMFF038B18+ ATAATTCCCACCCACAAATGGAGTTGGGTAAGGCAAGCTTTTCCATGGGCACTCAAGATA
rJMFF002N14+ ATAATTCCCACCCACAAATGGAGTTGGGTAAGGCAAGCTTTTCCATGGGCACTCAAGATA
____________________________________________________________
consensus ATAATTCCCACCCACAAATGGAGTTGGGTAAGGCAAGCTTTTCCATGGGCACTCAAGATA
. : . : . : . : . : . :
rJMSF039I12+ TAGAATCAGGTAAGGACCATGGTCATCATGACTGCTCAAATCATTCAAACTATCATCAAC
rJMFF020M23+ TAGAATCAGGTAAGGACCATGGTCATCATGACTGCTCAAATCATNCAANCTATCATCANC
rJMFF038B18+ TAGAATCAGGTAAGGACCATGGTCATCGTGACTGCTCAAATCATTCAAACTATCATCAAC
rJMFF002N14+ TAGAATCAGGTAAGGACCATGGTCATCATGACTGCTCAAATCATTCAAACTATCATCAAC
rJMFF049A15+ TGCTCAAATCATTCAAACTATCATCACC
____________________________________________________________
consensus TAGAATCAGGTAAGGACCATGGTCATCATGACTGCTCAAATCATTCAAACTATCATCAAC
. : . : . : . : . : . :
rJMSF039I12+ ATGAGCATGAGGAACATCATCATCATCATCAACATGAGCATGAGGAACATCATCATCATC
rJMFF020M23+ ATGAGCATGAGGANCATCATCATCATCATCANCATGAGCANGAGGANCATCATCATCATC
rJMFF038B18+ ATGAGCATGAGGAACATCATCATCATCATCAACATGAGCATGAGGAACATCATCATCATC
rJMFF002N14+ ATGAGCATGAGGAACATCATCATCATCATCAACATGAGCATGAGGAACATCATCATCATC
rJMFF049A15+ ATGAGCATGAGGANCATCATCATCATCATCAACATGAGCATGAGGAACATCATCATCATC
____________________________________________________________
consensus ATGAGCATGAGGAACATCATCATCATCATCAACATGAGCATGAGGAACATCATCATCATC
. : . : . : . : . : . :
rJMSF039I12+ ATCATCATCACCATCATCATCAACATGAGCATGATGAACATCATCATCATCATCAACATG
rJMFF020M23+ ATCATCATCACCATCATCATCANCATGAGCATGATGAACATCATCATCATCATCANCATG
rJMFF038B18+ ATCATCATCACCATCATCATCAACATGAGCATGATGAACATCATCATCATCATCAACATG
rJMFF002N14+ ATCATCATCACCATCATCATCAACATGAGCATGATGAACATCATCATCATCATCAACATG
rJMFF049A15+ ATCATCATCACCATCATCATCAACATGAGCATGATGAACATCATCATCATCATCAACATG
____________________________________________________________
consensus ATCATCATCACCATCATCATCAACATGAGCATGATGAACATCATCATCATCATCAACATG
. : . : . : . : . : . :
rJMSF039I12+ ATGAGCATGATGAACATCATCATCATCAACATGATGAGCATGATGAACATCATCATCACC
rJMFF020M23+ ATGAGCATGATGAACATCATCATCATCANCATGATGAGCATGATGAACATCATCATCACC
rJMFF038B18+ ATGAGCATGATGAACATCATCATCATCAACATGATGAGCATGATGAACATCATCATCACC
rJMFF002N14+ ATGAGCATGATGAACAACATCATCATCAACATGATGAGCATGATGAACATCATCATCACC
rJMFF049A15+ ATGAGCATGATGAACATCATCATCATCAACATGATGAGCATGATGAACATCATCATCACC
____________________________________________________________
consensus ATGAGCATGATGAACATCATCATCATCAACATGATGAGCATGATGAACATCATCATCACC
. : . : . : . : . : . :
rJMSF039I12+ AACATGAGCATGATGAACATCATCATCATCAACATGAGCATGATGAACATGATCATCATC
rJMFF020M23+ AACATGAGCATGATGAACATCATCATCATCAACATGAGCATGATGAACATGATCATCATC
rJMFF038B18+ AACATGAGCATGATGAACATCATCATCATCAACATGAGCATGATGAACATGATCATCATC
rJMFF002N14+ AACATGAGCATGATGAACATCATCATCATCAACATGAGCATGATGAACATGATCATCATC
rJMFF046K17+ ACATGAGCATGATGAACATCATCATCATCAACATGAGCATGATGAACATGATCATCTTC
rJMFF049A15+ AACATGAGCATGATGAACATCATCATCATCAACATGAGCATGATGAACATGATCATCATC
____________________________________________________________
consensus AACATGAGCATGATGAACATCATCATCATCAACATGAGCATGATGAACATGATCATCATC
. : . : . : . : . : . :
rJMSF039I12+ TTAAGGGACTAAAAAAGCTGGAGATTGGGGGTTGTTGCAAGAGTTTTAGGAGTGAATGCT
rJMFF020M23+ TTAAGGGNNTAAAAAAGCTGGAGATNGGGGGTNGTTGCAAGAGTTNTAGGAGNGAATGNT
rJMFF038B18+ TTAAGGGACTAAAAAAGCTGGAGATTGGGGGTTGTTGCAAGAGTTTTAGGAGTGAATGCT
rJMFF002N14+ TTAAGGGACTAAAAAAGCTGGAGATTGGGGGTTGTTGCAAGAGTTTTAGGAGTGAATGCT
rJMFF046K17+ TTAAGGGACTAAAAAAGCTGGAGATTGGGGGTTGTTGCAAGAGTTTTAGGAGTGAATGCT
rJMFF049A15+ TTAAGGGACTAAAAAAGCGGGAGATTGGGGGTTGTTGCAAGAGTTTTAGGAGTGAATGCT
____________________________________________________________
consensus TTAAGGGACTAAAAAAGCTGGAGATTGGGGGTTGTTGCAAGAGTTTTAGGAGTGAATGCT
. : . : . : . : . : . :
rJMSF039I12+ GTGGAAAAAGTAGTCACCATGGATCCAACTTCGGAGGAACGTTACCAGAAATAGTTATTG
rJMFF020M23+ GTGGAAAAAGTAGTCNCCATGGATCCAACTTCGGAGGANCGTTNCCAGAAATAGTTATTG
rJMFF038B18+ GTGGAAAAAGTAGTCACCATGGATCCAACTTCGGAGGAACGTTACCAGAAATAGTTATTG
rJMFF002N14+ GTGGAAAAAGTAGTCACCATGGATCCAACTTCGGAGGAACGTTACCAGAAATAGTTATTG
rJMFF046K17+ GTGGAAAAAGTAGTCCCCATGGATCCAACTTCGGAGGAACGTTCCCAGAAATAGTTATTG
rJMFF049A15+ GTGGAAAAAGTAGTCACCATGGATCCAACTTCGGAGGAACGTTACCAGAAATAGTTATTG
____________________________________________________________
consensus GTGGAAAAAGTAGTCACCATGGATCCAACTTCGGAGGAACGTTACCAGAAATAGTTATTG
. : . : . : . : . : . :
rJMSF039I12+ AATGAATCAAATGATAG
rJMFF020M23+ AANGAATCAAATGATAGCTCAGCTCAGCTCATNTTNTAATAAAAATGGTTGGTTNCCTCG
rJMFF038B18+ AATGAATCAAATGATAGCTCAGCTCAGCTCATTTTCTAATAAAAATGGTTGGTTACCTTG
rJMFF002N14+ AATGAATCAAATGATAGCTCAGCTCAGCTCATTTTCTAATAAAAATGGTTGGTTACCTTG
rJMFF046K17+ AATGAATCAAATGATAGCTCAGCTCAGCTCATTTTTTAATAAAAATGGTTGGTTCCCTTG
rJMFF049A15+ AATGAATCAAATGATAGCTCAGCTCAGCTCATTTTCTAATAAAAATGGTTGGTTACCTTG
____________________________________________________________
consensus AATGAATCAAATGATAGCTCAGCTCAGCTCATTTTCTAATAAAAATGGTTGGTTACCTTG
. : . : . : . : . : . :
rJMFF020M23+ AAGTAATATATTAGTAGCNGACTAGNTGAGCGAGCAGCTAATTTTGTATGGAACTTAATC
rJMFF038B18+ AAGTAATATATTAGTAGCTGACTAGCTGAGCGAGCAGCTAATTTTGTATGGAACTTAATC
rJMFF002N14+ AAGTAATATATTAGTAGCTGACTAGCTGAGCGAGCAGCTAATTTTGTATGGAACTTAATC
rJMFF046K17+ AAGTAATATATTAGTAGCTGACTAGCTGAGCGAGCAGCTAATTTTGTATGGAACTTAATC
rJMFF049A15+ AAGTAATATATTAGTAGCTGACTAGCTGAGCGAGCAGCTAATTTTGTATGGAACTTAATC
____________________________________________________________
consensus AAGTAATATATTAGTAGCTGACTAGCTGAGCGAGCAGCTAATTTTGTATGGAACTTAATC
. : . : . : . : . : . :
rJMFF020M23+ GCACATCAGAAAT
rJMFF038B18+ GCACATTAGAAATAT
rJMFF002N14+ GCACATTAGAAATAT
rJMFF046K17+ GCCCATTAGAAATATTAGAAAGGTTGCTTCAA
rJMFF049A15+ GCACATTAGAAATATTAGAAAGGTTGCTTCAAGAAAAAAAAAAAAAAAACTCTCCAGGGT
____________________________________________________________
consensus GCACATTAGAAATATTAGAAAGGTTGCTTCAAGAAAAAAAAAAAAAAAACTCTCCAGGGT