Contig 008374:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF016N19Sequence733008374 (5)ref|XP_009757138.1|5e-114PREDICTED: protein NRT1/ PTR FAMILY 3.1 [Nicotiana sylvestris]
JMFF041D03Sequence646012989 (5)ref|XP_004238938.1|5e-113PREDICTED: protein NRT1/ PTR FAMILY 3.1 [Solanum lycopersicum]615008374 (5)ref|XP_009610945.1|2e-94PREDICTED: protein NRT1/ PTR FAMILY 3.1 [Nicotiana tomentosiformis]
JMFF048G18Sequence188012989 (5)ref|XP_010681571.1|4e-09PREDICTED: protein NRT1/ PTR FAMILY 3.1 [Beta vulgaris subsp. vulgaris]248008374 (5)ref|XP_009610945.1|8e-06PREDICTED: protein NRT1/ PTR FAMILY 3.1 [Nicotiana tomentosiformis]
JMFN039H08Sequence578008374 (5)ref|XP_009610945.1|7e-97PREDICTED: protein NRT1/ PTR FAMILY 3.1 [Nicotiana tomentosiformis]
JMSF049K17Sequence648012989 (5)ref|XP_004238938.1|3e-112PREDICTED: protein NRT1/ PTR FAMILY 3.1 [Solanum lycopersicum]722008374 (5)ref|XP_009610945.1|5e-114PREDICTED: protein NRT1/ PTR FAMILY 3.1 [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF049K17+ GCTATGCACCATAGTCTTCTACGACCGCGT
rJMFF016N19+ CATCCATGCTATGCACCATAGTCTTNTACGACCGCGT
                      ____________________________________________________________
consensus CATCCATGCTATGCACCATAGTCTTCTACGACCGCGT
 
. : . : . : . : . : . :
rJMSF049K17+ CTTCGTCCCCTTGGCCAGAAAAGTCACCGGACTCGAGCGTGGCATCTCCTTTCTCAGCCG
rJMFF041D03+ AGCCG
JMFN039H08- TCCTTTCTCAGCCG
rJMFF016N19+ CTTCGTCCCCTTGGCCAGAAAAGTCACCGGACTCGAGCGTGGCATCTCCTTTCTCAGCCG
                      ____________________________________________________________
consensus CTTCGTCCCCTTGGCCAGAAAAGTCACCGGACTCGAGCGTGGCATCTCCTTTCTCAGCCG
 
. : . : . : . : . : . :
rJMSF049K17+ CATGGGCATTGGCTTCTTCATCTCCATCCTCGCAACTCTGGTGGCCGGCTTCGTAGAAAT
rJMFF041D03+ CATGGGCATTGGCTTCTTCATCTCCATCCTCGCAACTCTGGTGGCCGGCTTCGTAGAAAT
JMFN039H08- CATGGGCATTGGCTTCTTCATCTCCATCCTCGCAACTCTGGTGGCCGGCTTCGTAGAAAT
rJMFF016N19+ CATGGGCATTGGCTTCTTCATCTCCATCCTCGCAACTCTGGTGGCCGGCTTCGTAGAAAT
                      ____________________________________________________________
consensus CATGGGCATTGGCTTCTTCATCTCCATCCTCGCAACTCTGGTGGCCGGCTTCGTAGAAAT
 
. : . : . : . : . : . :
rJMSF049K17+ GAAGCGGAAACACGCCGCCGCTGCCCACGGAATAACTGATAAGCCCGACGCAATGATTCC
rJMFF041D03+ GAAGCGGAAACACGCCGCCGCTGCCCACGGAATAACTGATAAGCCCGACGCAATGATTCC
JMFN039H08- GAAGCGGAAACACGCCGCCGCTGCCCACGGAATAACTGATAAGCCCGACGCAATGATTCC
rJMFF016N19+ GAAGCGGAAACACGCCGCCGCTGCCCACGGAATAACTGATAAGCCCGACGCAATGATTCC
                      ____________________________________________________________
consensus GAAGCGGAAACACGCCGCCGCTGCCCACGGAATAACTGATAAGCCCGACGCAATGATTCC
 
. : . : . : . : . : . :
rJMSF049K17+ CATTCCGGTTTTCTGGCTGGTGCCGCAGTACTGCCTGCACGGGATGGCAGAGGCCTTCAT
rJMFF041D03+ CATTCCGGTTTTCTGGCTGGTGCCGCAGTATTGCCTGCACGGGATGGCAGAGGCCTTCAT
JMFN039H08- CATTCCGGTTTTCTGGCTGGTGCCGCAGTACTGCCTGCACGGGATGGCAGAGGCCTTCAT
rJMFF016N19+ CATTCCGGTTTTCTGGCTGGTGCCGCAGTACTGCCTGCACGGGATGGCAGAGGCCTTCAT
                      ____________________________________________________________
consensus CATTCCGGTTTTCTGGCTGGTGCCGCAGTACTGCCTGCACGGGATGGCAGAGGCCTTCAT
 
. : . : . : . : . : . :
rJMSF049K17+ GTCAATCGGCCACCTGGAGTTCTTCTACGATCAAGCCCCGGAGAGCATGAGGAGCACGGC
rJMFF041D03+ GTCAATCGGCCACCTGGAGTTCTTCTACGATCAAGCCCCGGAGAGCATGAGGAGCACGGC
JMFN039H08- GTCAATCGGCCACCTGGAGTTCTTCTACGATCAAGCCCCGGAGAGCATGAGGAGCACGGC
rJMFF016N19+ GTCAATCGGCCACCTGGAGTTCTTCTACGATCAAGCCCCGGAGAGCATGAGGAGCACGGC
                      ____________________________________________________________
consensus GTCAATCGGCCACCTGGAGTTCTTCTACGATCAAGCCCCGGAGAGCATGAGGAGCACGGC
 
. : . : . : . : . : . :
rJMSF049K17+ GTCGGCGCTGTTCTGGACCGCCATCTCCGCCGGGAATTACATGAGCACTCTCTTGGTTTC
rJMFF041D03+ GTCGGCGCTGTTCTGGACCGCCATCTCCGCCGGGAATTACATGAGCACTCTCTTGGTTTC
JMFN039H08- GTCGGCGCTGTTCTGGACCGCCATCTCCGCCGGGAATTACATGAGCACTCTCTTGGTTTC
rJMFF016N19+ GTCGGCGCTGTTCTGGACCGCCATCTCCGCCGGGAATTACATGAGCACTCTCTTGGTTTC
                      ____________________________________________________________
consensus GTCGGCGCTGTTCTGGACCGCCATCTCCGCCGGGAATTACATGAGCACTCTCTTGGTTTC
 
. : . : . : . : . : . :
rJMSF049K17+ TCTGGTCCACAAGTTCAGCGCTGGCCCCGGCGGATCAAACTGGCTTCCCGATAACAATTT
rJMFF041D03+ TCTGGTCCACAAGTTCAGCGCTGGCCCCGGCGGATCAAACTGGCTTCCCGATAACAATTT
JMFN039H08- TCTGGTCCACAAGTTCAGCGCTGGCCCCGGCGGATCAAACTGGCTTCCCGATAACAATTT
rJMFF016N19+ TCTGGTCCACAAGTTCAGCGCTGGCCCCGGCGGATCAAACTGGCTTCCCGATAACAATTT
                      ____________________________________________________________
consensus TCTGGTCCACAAGTTCAGCGCTGGCCCCGGCGGATCAAACTGGCTTCCCGATAACAATTT
 
. : . : . : . : . : . :
rJMSF049K17+ GAACAAGGGCAAGTTGGAGTACTTTTACTGGCTCCTCACATTGCTGCAACTCTTCAACTT
rJMFF041D03+ GAACAAGGGCAAGTTGGAGTACTTTTACTGGCTCCTCACATTGCTGCAACTCTTCAATTT
JMFN039H08- GAACAAGGGCAAGTTGGAGTACTTTTACTGGCTCCTCACATTGCTGCAACTCTTCAACTT
rJMFF016N19+ GAACAAGGGCAAGTTGGAGTACTTTTACTGGCTCCTCACATTGCTGCAACTCTTCAACTT
rJMFF048G18+ TTCAACTT
                      ____________________________________________________________
consensus GAACAAGGGCAAGTTGGAGTACTTTTACTGGCTCCTCACATTGCTGCAACTCTTCAACTT
 
. : . : . : . : . : . :
rJMSF049K17+ TGTTTACTATCTTTTCTGTGCAAAATTCTATACTTTCAAGCCAATTCAGATCCAGAAGAT
rJMFF041D03+ TGTTTACTATCTTTTCTGTGCAAAATTCTATACTTTCAAGCCAATTCAGATCCAGAAGAT
JMFN039H08- TGTTTACTATCTTTTCTGTGCAAAATTCTATACTTTCAAGCCAATTCAGATCCAGAAGAT
rJMFF016N19+ TGTTTACTATCTTTTCTGTGCAAAATTCTATACTTTCAAGCCAATTCAGATCCAGAAGAT
rJMFF048G18+ TGTTTACTATCTTTTCTGTGCAAAATTCTATACTTTCAAGCCAATTCAGATCCAGAAGAT
                      ____________________________________________________________
consensus TGTTTACTATCTTTTCTGTGCAAAATTCTATACTTTCAAGCCAATTCAGATCCAGAAGAT
 
. : . : . : . : . : . :
rJMSF049K17+ GGAAGGTGGTGATGAGCCCAAAAGGAATGGGACGATTCAACTTGCAAACAATGTTTAGCT
rJMFF041D03+ GGAAGGTGGTGATGAGCCCAAAAGGAATGGGACGATTCAACTTGCAAACAATGTTTAGCT
JMFN039H08- GGAAGGTGGTGATGAGCCCAAAAGGAATGGGACGATTNCACTTGCAAACAATGTTTAGCT
rJMFF016N19+ GGAAGGTGGTGATGAGCCCAAAAGGAATGGGACGATTCAACTTGCAAACAATGTTTAGCT
rJMFF048G18+ GGAAGGTGGTGATGAGCCCAAAAGGAATGGGACGATTCAACTTGCAAACAATGTTTAGCT
                      ____________________________________________________________
consensus GGAAGGTGGTGATGAGCCCAAAAGGAATGGGACGATTCAACTTGCAAACAATGTTTAGCT
 
. : . : . : . : . : . :
rJMSF049K17+ ATTAATTTGATTATTATATGTAGTAATATATAAGATCAAATTAACTAGCATATGCATCTT
rJMFF041D03+ ATTAATTTGATTATTATATGTAGTAATATATAAGATCAAATTAACTAGCATATGCATCTT
JMFN039H08- ATTAATTTGATTATTATATGTAGT
rJMFF016N19+ ATTAATTTGATTATTATATGTAGTAATATATAAGATCAAATTAACTAGCATATGCATCTT
rJMFF048G18+ ATTAATTTGATTATTATATGTAGTAATATATAAGATCAAATTAACTAGCATATGCATCTT
                      ____________________________________________________________
consensus ATTAATTTGATTATTATATGTAGTAATATATAAGATCAAATTAACTAGCATATGCATCTT
 
. : . : . : . : . : . :
rJMSF049K17+ TAATTTAATTTGGGCCAGGCCTTGATATGTAC
rJMFF041D03+ TAATTTAATT
rJMFF016N19+ TAATTTAATTTGGGCCAGGCCTTGATATGTAC
rJMFF048G18+ TAATTTAATTTGGGCCAGGCCTTGATATGTACGTATGTATAGTAGTATATACACTTTGAC
                      ____________________________________________________________
consensus TAATTTAATTTGGGCCAGGCCTTGATATGTACGTATGTATAGTAGTATATACACTTTGAC