Contig 008362:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF032O18Sequence570004658 (3)gb|ACJ84811.1|4e-102unknown [Medicago truncatula]813008362 (3)ref|XP_009765027.1|5e-144PREDICTED: 26S protease regulatory subunit S10B homolog B [Nicotiana sylvestris
JMFF032O21Sequence598004658 (3)gb|ACJ84811.1|3e-98unknown [Medicago truncatula]725008362 (3)gb|KJB59782.1|7e-108hypothetical protein B456_009G271600 [Gossypium raimondii] gb|KJB59783.1| hypoth
JMFF046O06Sequence541004658 (3)gb|ACJ84811.1|1e-81unknown [Medicago truncatula]505008362 (3)gb|AFK35582.1|5e-44unknown [Medicago truncatula]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF032O18+ A
                      ____________________________________________________________
consensus A
 
. : . : . : . : . : . :
rJMFF032O18+ TTGCAAGTAACATAGATGCTAATTTCTTGAAGGTNGTATCAAGTGCCATTATAGATAAGT
                      ____________________________________________________________
consensus TTGCAAGTAACATAGATGCTAATTTCTTGAAGGTNGTATCAAGTGCCATTATAGATAAGT
 
. : . : . : . : . : . :
rJMFF032O18+ ACATAGGTGAGAGTGCAAGGTTGATCAGAGAAATGTTTAACTATGCTCGTGATCATCAGC
                      ____________________________________________________________
consensus ACATAGGTGAGAGTGCAAGGTTGATCAGAGAAATGTTTAACTATGCTCGTGATCATCAGC
 
. : . : . : . : . : . :
rJMFF032O18+ CATGCATCATATTTATGGATGAGATTGATGCAATCGGTGGGCGACGTTTTAGTGAAGGAA
rJMFF032O21+ TGGATGAGATTGATGCAATCGGTGGGCGACGTTTTAGTGAAGGAA
                      ____________________________________________________________
consensus CATGCATCATATTTATGGATGAGATTGATGCAATCGGTGGGCGACGTTTTAGTGAAGGAA
 
. : . : . : . : . : . :
rJMFF032O18+ CAAGTGCTGACCGCGAAATTCAAAGAACGCTTATGGAATTGCTTAACCAATTGGATGGAT
rJMFF032O21+ CAAGTGCTGACCGCGAAATTCAAAGAACGCTTATGGAATTGCTTAACCAATTGGATGGAT
                      ____________________________________________________________
consensus CAAGTGCTGACCGCGAAATTCAAAGAACGCTTATGGAATTGCTTAACCAATTGGATGGAT
 
. : . : . : . : . : . :
rJMFF032O18+ TTGACCAGCTTGGGAAGGTAAAAATGATCATGGCAACTAATAGACCTGATGTTCTGGACC
rJMFF032O21+ TTGACCAGCTTGGGAAGGTAAAAATGATCATGGCAACTAATAGACCTGATGTTCTGGACC
                      ____________________________________________________________
consensus TTGACCAGCTTGGGAAGGTAAAAATGATCATGGCAACTAATAGACCTGATGTTCTGGACC
 
. : . : . : . : . : . :
rJMFF032O18+ CAGCTCTTCTTCGTCCTGGTCGATTAGATAGGAAAATAGAGATCGCGCTACCTAATGAAC
rJMFF032O21+ CAGCTCTTCTTCGTCCTGGTCGATTAGATAGGAAAATAGAGATCGCGCTACCTAATGAAC
                      ____________________________________________________________
consensus CAGCTCTTCTTCGTCCTGGTCGATTAGATAGGAAAATAGAGATCGCGCTACCTAATGAAC
 
. : . : . : . : . : . :
rJMFF032O18+ AATCAAGAATGGAGATACTCAAGATCCATGCTTCTGGGATTGCCAAGCATGGTGAAATTG
rJMFF032O21+ AATCAAGAATGGAGATACTCAAGATCCATGCTTCTGGGATTGCCAAGCATGGTGAAATTG
rJMFF046O06+ GGGATTGCCAAGCATGGTGAAATTG
                      ____________________________________________________________
consensus AATCAAGAATGGAGATACTCAAGATCCATGCTTCTGGGATTGCCAAGCATGGTGAAATTG
 
. : . : . : . : . : . :
rJMFF032O18+ ACTATGAAGCTGTTGTTAAGCTTGCTGAGGGCTTCAATGGAGCTGATCTTCGCAATGTTT
rJMFF032O21+ ACTATGAAGCTGTTGTTAAGCTTGCTGAGGGCTTCAATGGAGCTGATCTTCGCAATGTTT
rJMFF046O06+ ACTATGAAGCTGTTGTTAAGCTTGCTGAGGGCTTCAATGGAGCTGATCTTCGCAATGTTT
                      ____________________________________________________________
consensus ACTATGAAGCTGTTGTTAAGCTTGCTGAGGGCTTCAATGGAGCTGATCTTCGCAATGTTT
 
. : . : . : . : . : . :
rJMFF032O18+ GCACTGAAGCTGGCATGTCTGCAATTCGTGCAGAGCGTGATTACGTCATCCATGAAGATT
rJMFF032O21+ GCACTGAAGCTGGCATGTCTGCAATTCGTGCAGAGCGTGATTACGTCATCCATGAAGATT
rJMFF046O06+ GCACTGAAGCTGGCATGTCTGCAATTCGTGCAGAGCGTGATTACGTCATCCATGAAGATT
                      ____________________________________________________________
consensus GCACTGAAGCTGGCATGTCTGCAATTCGTGCAGAGCGTGATTACGTCATCCATGAAGATT
 
. : . : . : . : . : . :
rJMFF032O18+ TCATGAAGGCTGTAAGGAAACTGAATGAAGCAAAGAAACTTGAATCAAGTGCTCACTACA
rJMFF032O21+ TCATGAAGGCTGTAAGGAAACTGAATGAAGCAAAGAAACTTGAATCAAGTGCTCACTACA
rJMFF046O06+ TCATGAAGGCTGTAAGGAAACTGAATGAAGCAAAGAAACTTGAATCAAGTGCTCACTACA
                      ____________________________________________________________
consensus TCATGAAGGCTGTAAGGAAACTGAATGAAGCAAAGAAACTTGAATCAAGTGCTCACTACA
 
. : . : . : . : . : . :
rJMFF032O18+ GTGCTGATTTCGGAAAAGAATAAGCAATATTGTATTGTAGGGAAGGAGGCATGGAAGAGT
rJMFF032O21+ GTGCTGATTTCGGAAAAGAATAAGCAATATTGTATTGTAGGGAAGGAGGCATGGAAGAGT
rJMFF046O06+ GTGCTGATTTCGGAAAAGAATAAGCAATATTGTATTGTAGGGAAGGAGGCATGGAAGAGT
                      ____________________________________________________________
consensus GTGCTGATTTCGGAAAAGAATAAGCAATATTGTATTGTAGGGAAGGAGGCATGGAAGAGT
 
. : . : . : . : . : . :
rJMFF032O18+ CAGTGTGATGTAGTTGTCTGAGGAGAAGCATTGCTATTCCAATTGGATATTTGATTGTTT
rJMFF032O21+ CAGTGTGATGTAGTTGTCTGAGGAGAAGCATTGCTATTCCAATTGGATATTTGATTGTTT
rJMFF046O06+ CAGTGTGATGTAGTTGTCTGAGGAGAAGCATTGCTATTCCAATTGGATATTTGATTGTTT
                      ____________________________________________________________
consensus CAGTGTGATGTAGTTGTCTGAGGAGAAGCATTGCTATTCCAATTGGATATTTGATTGTTT
 
. : . : . : . : . : . :
rJMFF032O18+ GATTGTTGACACAATTTGTTTCCCTTTATTCTTTTATGCAGAATTTTGTATCATTTACAC
rJMFF032O21+ GATTGTTGACACAATTTGTTTCCCTTTATTCTTTTATGCAGAATTTTGTATCATTTACAC
rJMFF046O06+ GATTGTTGACACAATTTGTTTCCCTTTATTCTTTTATGCAGAATTTTGTATCATTTACAC
                      ____________________________________________________________
consensus GATTGTTGACACAATTTGTTTCCCTTTATTCTTTTATGCAGAATTTTGTATCATTTACAC
 
. : . : . : . : . : . :
rJMFF032O18+ ACTGCCTCCTGTTATTGTGAAAATAATCAATC
rJMFF032O21+ ACTGCCTCCTGTTATTGTGAAAATAATCAATCACCTACACTTCCCACCATTTCACTTTCG
rJMFF046O06+ ACTGCCTCCTGTTATTGTGAAAATAATCAATCACCTACACTTCCCACCATTTCACTTTCG
                      ____________________________________________________________
consensus ACTGCCTCCTGTTATTGTGAAAATAATCAATCACCTACACTTCCCACCATTTCACTTTCG
 
. : . : . : . : . : . :
rJMFF032O21+ AGATGTGTATGTTGACACTG
rJMFF046O06+ AGATGTGTATGTTGACACTGAATATTTTTGAGTATTAAAATATTTAAATACATTTTGGTT
                      ____________________________________________________________
consensus AGATGTGTATGTTGACACTGAATATTTTTGAGTATTAAAATATTTAAATACATTTTGGTT