clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF044P06 | Sequence | 637 | 013459 (15) | ref|XP_009598672.1| | 9e-56 | PREDICTED: transcription factor GTE7-like [Nicotiana tomentosiformis] | 615 | 008348 (7) | |||
JMFF045K18 | Sequence | 642 | 013459 (15) | ref|XP_009598672.1| | 1e-55 | PREDICTED: transcription factor GTE7-like [Nicotiana tomentosiformis] | 629 | 008348 (7) | |||
JMSF010K20 | Sequence | 241 | 003579 (2) | 761 | 008348 (7) | ||||||
JMSF035O12 | Sequence | 665 | 013459 (15) | ref|XP_009598672.1| | 2e-60 | PREDICTED: transcription factor GTE7-like [Nicotiana tomentosiformis] | 669 | 008348 (7) | |||
JMSF039J16 | Sequence | 656 | 013459 (15) | ref|XP_009598672.1| | 1e-58 | PREDICTED: transcription factor GTE7-like [Nicotiana tomentosiformis] | 877 | 008348 (7) | emb|CAD13175.1| | 1e-65 | viroid RNA-binding protein [Solanum lycopersicum] |
JMSF040A12 | Sequence | 659 | 013459 (15) | ref|XP_009598672.1| | 3e-59 | PREDICTED: transcription factor GTE7-like [Nicotiana tomentosiformis] | 860 | 008348 (7) | ref|NP_001234374.1| | 5e-12 | PSTVd RNA-binding protein Virp1d [Solanum lycopersicum] gb|AAG13810.1|AF190891_1 |
JMSF040A17 | Sequence | 656 | 013459 (15) | ref|XP_009598672.1| | 1e-58 | PREDICTED: transcription factor GTE7-like [Nicotiana tomentosiformis] | 865 | 008348 (7) | emb|CAD13175.1| | 8e-38 | viroid RNA-binding protein [Solanum lycopersicum] |
This contig is upended
. : . : . : . : . : . :
rJMSF039J16+ GGCCCATGGTGAAACAACCGA
____________________________________________________________
consensus GGCCCATGGTGAAACAACCGA
. : . : . : . : . : . :
rJMSF039J16+ AGCCTAGGGCCAAGGATCCAAATAAGAGAGAAATGAGTATCGAGGAAAAGCATAAACTTG
____________________________________________________________
consensus AGCCTAGGGCCAAGGATCCAAATAAGAGAGAAATGAGTATCGAGGAAAAGCATAAACTTG
. : . : . : . : . : . :
rJMSF040A17+ CTGGTGCAGATTATNAGGA
rJMSF039J16+ GACTTGGATTGCAGAGTTTGCCTCAAGAGAAGATGCCCCAACTGGTGCAGATTATAAGGA
____________________________________________________________
consensus GACTTGGATTGCAGAGTTTGCCTCAAGAGAAGATGCCCCAACTGGTGCAGATTATAAGGA
. : . : . : . : . : . :
rJMSF040A17+ AGAGGAACGAGCATTTGGCACAAGATGGTGATGAAATTGAGCTGGACATTGAGGCTTTGG
rJMSF039J16+ AGAGGAACGAGCATTTGGCACAAGATGGTGATGAAATTGAGCTGGACATTGAGGCTTTGG
rJMSF040A12+ AAATTGAGCTGGACATTGAGGCTTTGG
____________________________________________________________
consensus AGAGGAACGAGCATTTGGCACAAGATGGTGATGAAATTGAGCTGGACATTGAGGCTTTGG
. : . : . : . : . : . :
rJMSF040A17+ ACACTGAGACTCTTTGGGAGCTTGATCGATTCGTGA-CCAATTGGAAGAAGATGGTGAGC
rJMSF039J16+ ACACTGAGACTCTTTGGGAGCTTGATCGATTCGTGA-CCAATTGGAAGAAGATGGTGAGC
rJMSF040A12+ ACACTGAGACTCTTTGGGAGCTTGATCGATTCGTGACCCAATTGGAAGAAGATGGTGAGC
____________________________________________________________
consensus ACACTGAGACTCTTTGGGAGCTTGATCGATTCGTGA-CCAATTGGAAGAAGATGGTGAGC
. : . : . : . : . : . :
rJMSF040A17+ AAAA-CCAAGAGACAAGCTTTAATAAGTAATTTAACAGCGCCAACTGCTGCTGCAGCTGC
rJMSF039J16+ AAAA-CCAAGAGACAAGCTTTAATAAGTAATTTAACAGCGCCAACTGCTGCTGCAGCTGC
rJMSF010K20+ AGAGACAAGCTTTAATAAGTAATTTAACAGCGCCAACTGCTGCTGCAGCTGC
rJMSF040A12+ AAAACCCAAGAGACAAGCTTTAATAAGTAATTTAACAGCGCCAACTGCTGCTGCAGCTGC
____________________________________________________________
consensus AAAA-CCAAGAGACAAGCTTTAATAAGTAATTTAACAGCGCCAACTGCTGCTGCAGCTGC
. : . : . : . : . : . :
rJMSF040A17+ AGCTGCTACGACATCCAACGCCGAGAAGTATGATGGGGCTGCTCTAAGCGAGAAAATGGA
rJMSF039J16+ AGCTGCTACGACATCCAACGCCGAGGAGGATGATGGGGCTGCTCTAAGCGAGAAAATGGA
rJMFF044P06+ GAGAAAATGGA
rJMSF010K20+ AGCTGCTACGACATCCAACGCCGAGGAGGATGATGGGGCTGCTCTAAGCGAGAAAATGGA
rJMSF040A12+ AGCTGCTACGACATCCAACGCCGAGGAGGATGATGGGGCTGCTCTAAGCGAGAAAATGGA
____________________________________________________________
consensus AGCTGCTACGACATCCAACGCCGAGGAGGATGATGGGGCTGCTCTAAGCGAGAAAATGGA
. : . : . : . : . : . :
rJMSF040A17+ TATGGATTCCCCCAAGAAGCCTAAAAAGGGTGAAGCTGGGGATGAGGATGTTGACATTGA
rJMSF039J16+ TATGGATTCCCCCAAGAAGCCTAAAAAGGGTGAAGCTGGGGATGAGGATGTTGACATTGA
rJMFF044P06+ TATGGATTCCCCCAAGAAG-CTAAAAAGGGTGAAGCTGGGGATGAGGATGTTGACATTGA
rJMSF010K20+ TATGGATTCCCCCAAGAAGCCTAAAAAGGGTGAAGCTGGGGATGAGGATGTTGACATTGA
rJMSF040A12+ TATGGATTCCCCCAAGAAGCCTAAAAAGGGTGAAGCTGGGGATGAGGATGTTGACATTGA
rJMSF035O12+ CCCCCAAGAAGCCTAAAAAGGGTGAAGCTGGGGATGAGGATGTTGACATTGA
____________________________________________________________
consensus TATGGATTCCCCCAAGAAGCCTAAAAAGGGTGAAGCTGGGGATGAGGATGTTGACATTGA
. : . : . : . : . : . :
rJMSF040A17+ TGATGATATGCCTGCTACCAGTTTTCCTCCTATTGAAATTGAGAAGGACGAAGGTGGTGG
rJMSF039J16+ TGATGATATGCCTGCTACCAGTTTTCCTCCTATTGAAATTGAGAAGGACGAAGGTGGTGG
rJMFF044P06+ TGATGATATGCCTGCTACCAGTTTTCCTCCTATTGAAATTGAGAAGGACGAAGGTGGTGG
rJMSF010K20+ TGATGATATGCCTGCTACCAGTTTTCCTCCTATTGAAATTGAGAAGGACGAAGGTGGTGG
rJMSF040A12+ TGATGATATGCCTGCTACCAGTTTTCCTCCTATTGAAATTGAGAAGGACGAAGGTGGTGG
rJMSF035O12+ TGATGATATGCCTGCTACCAGTTTTCCTCCTATTGAAATTGAGAAGGACGAAGGTGGTGG
rJMFF045K18+ TATTGAAATTGAGAAGGACGAAGGTGGTGG
____________________________________________________________
consensus TGATGATATGCCTGCTACCAGTTTTCCTCCTATTGAAATTGAGAAGGACGAAGGTGGTGG
. : . : . : . : . : . :
rJMSF040A17+ TCGAGATCCTGATAATAATGGCAGTAGTAGCTCTAGCAGTTCAAGTAGTTCAAGCAGTGA
rJMSF039J16+ TCGAGATCCTGATAATAATGGCAGTAGTAGCTCTAGCAGTTCAAGTAGTTCAAGCAGTGA
rJMFF044P06+ TCGAGATCCTGATAATAATGGCAGTAGTAGCTCTAGCAGTTCAAGTAGTTCAAGCAGTGA
rJMSF010K20+ TCGAGATCCTGATAATAATGGCAGTAGTAGCTCTAGCAGTTCAAGTAGTTCAAGCAGTGA
rJMSF040A12+ TCGAGATCCTGATAATAATGGCAGTAGTAGCTCTAGCAGTTCAAGTAGTTCAAGCAGTGA
rJMSF035O12+ TCGAGATCCTGATAATAATGGCAGTAGTAGCTCTAGCAGTTCAAGTAGTTCAAGCAGTGA
rJMFF045K18+ TCGAGATCCTGATAATAATGGCAGTAGTAGCTCTAGCAGTTCAAGTAGTTCAAGCAGTGA
____________________________________________________________
consensus TCGAGATCCTGATAATAATGGCAGTAGTAGCTCTAGCAGTTCAAGTAGTTCAAGCAGTGA
. : . : . : . : . : . :
rJMSF040A17+ TTCGTCTTCTTCAAGTGGCTCTGATTCGGGGAGTTCTTCCGGGAGTGACTCAGATGCGGA
rJMSF039J16+ TTCGTCTTCTTCAAGTGGCTCTGATTCGGGGAGTTCTTCCGGGAGTGACTCAGATGCGGA
rJMFF044P06+ TTCGTCTTCTTCAAGTGGCTCTGATTCGGGGAGTTCTTCCGGGAGTGACTCAGATGCGGA
rJMSF010K20+ TTCGTCTTCTTCAAGTGGCTCTGATTCGGGGAGTTCTTCCGGGAGTGACTCAGATGCGGA
rJMSF040A12+ TTCGTCTTCTTCAAGTGGCTCTGATTCGGGGAGTTCTTCCGGGAGTGACTCAGATGCGGA
rJMSF035O12+ TTCGTCTTCTTCAAGTGGCTCTGATTCGGGGAGTTCTTCCGGGAGTGACTCAGATGCGGA
rJMFF045K18+ TTCGTCTTCTTCAAGTGGCTCTGATTCGGGGAGTTCTTCCGGGAGTGACTCAGATGCGGA
____________________________________________________________
consensus TTCGTCTTCTTCAAGTGGCTCTGATTCGGGGAGTTCTTCCGGGAGTGACTCAGATGCGGA
. : . : . : . : . : . :
rJMSF040A17+ TGATGCACAATCTTGATTCTACCATGCCCAAGTTGAAGAGGCTCGAGAATCATCAGCTCG
rJMSF039J16+ TGATGCACAATCTTGATTCTACCATGCCCAAGTTGAAGAGGCTCGAGAATCATCAGCTCG
rJMFF044P06+ TGATGCACAATCTTGATTCTACCATGCCCAAGTTGAAGAGGCTCGAGAATCATCAGCTCG
rJMSF010K20+ TGATGCACAATCTTGATTCTACCATGCCCAAGTTGAAGAGGCTCGAGAATCATCAGCTCG
rJMSF040A12+ TGATGCACAATCTTGATTCTACCATGCCCAAGTTGAAGAGGCTCGAGAATCATCAGCTCG
rJMSF035O12+ TGATGCACAATCTTGATTCTACCATGCCCAAGTTGAAGAGGCTCGAGAATCATCAGCTCG
rJMFF045K18+ TGATGCACAATCTTGATTCTACCATGCCCAAGTTGAAGAGGCTCGAGAATCATCAGCTCG
____________________________________________________________
consensus TGATGCACAATCTTGATTCTACCATGCCCAAGTTGAAGAGGCTCGAGAATCATCAGCTCG
. : . : . : . : . : . :
rJMSF040A17+ AGCTGTGGCACTCACCTTTTGTCGGTCTTTGTTACCTATGCTATTGTTTGTAATGAGGT
rJMSF039J16+ AGCTGTGGGACTCACCTTTTGTCGGTCTTTGTTACCTATGCTATTGTTTGTAATGAGGTG
rJMFF044P06+ AGCTGTGGCACTCACCTTTTGTCGGTCTTTGTTACCTATGCTATTGTTTGTAATGAGGTG
rJMSF010K20+ AGCTGTGGCACTCACCTTTTGTCGGTCTTTGTTACCTATGCTATTGTTTGTAATGAGGTG
rJMSF040A12+ AGCTGTGGCACTCACCTTTTGTCGGTCTTTGTTACCTATGCTATTGTTTGTAATGAGGTG
rJMSF035O12+ AGCTGTGGCACTCACCTTTTGTCGGTCTTTGTTACCTATGCTATTGTTTGTAATGAGGTG
rJMFF045K18+ AGCTGTGGCACTCACCTTTTGTCGGTCTTTGTTACCTATGCTATTGTTTGTAATGAGGTG
____________________________________________________________
consensus AGCTGTGGCACTCACCTTTTGTCGGTCTTTGTTACCTATGCTATTGTTTGTAATGAGGTG
. : . : . : . : . : . :
rJMSF039J16+ TAGTGCCCAGCTTGTGGAGGAAAGAAGATAGATGCGTACTATGTATTGGCATTTGAGGTT
rJMFF044P06+ TAGTGCCCAGCTTGTGGAGGAAAGAAGATAGATGCATACTATGTATTGGCATTTGAGGTT
rJMSF010K20+ TAGTGCCCAGCTTGTGGAGGAAAGAAGATAGATGCATACTATGTATTGGCATTTGAGGTT
rJMSF040A12+ TAGTGCCCAGCTTGTGGAGGAAAGAAGATAGATGCATACTATGTATTGGCATTTGAGGTT
rJMSF035O12+ TAGTGCCCAGCTTGTGGAGGAAAGAAGATAGATGCATACTATGTATTGGCATTTGAGGTT
rJMFF045K18+ TAGTGCCCAGCTTGTGGAGGAAAGAAGATAGATGCATACTATGTATTGGCATTTGAGGTT
____________________________________________________________
consensus TAGTGCCCAGCTTGTGGAGGAAAGAAGATAGATGCATACTATGTATTGGCATTTGAGGTT
. : . : . : . : . : . :
rJMSF039J16+ GCTTTTAGTTATGGCTCTTTAATGATTAATGATAGGGAAAATGAGAGAGATGTAGATGGT
rJMFF044P06+ GCTTTTAGTTATGGCTCTTTAATGATTAATGATAGGGAAAATGAGAGAGATGTAGATGGT
rJMSF010K20+ GCTTTTAGTTATGGCTCTTTAATGATTAATGATAGGGAAAATGAGAGAGATGTAGATGGT
rJMSF040A12+ GCTTTTAGTTATGGCTCTTTAATGATTAATGATAGGGAAAATGAGAGAGATGTAGATGGT
rJMSF035O12+ GCTTTTAGTTATGGCTCTTTAATGATTAATGATAGGGAAAATGAGAGAGATGTAGATGGT
rJMFF045K18+ GCTTTTAGTTATGGCTCTTTAATGATTAATGATAGGGAAAATGAGAGAGATGTAGATGGT
____________________________________________________________
consensus GCTTTTAGTTATGGCTCTTTAATGATTAATGATAGGGAAAATGAGAGAGATGTAGATGGT
. : . : . : . : . : . :
rJMSF039J16+ TGAGACTTCAGATACCCT
rJMFF044P06+ TGAGACTTCAGATACCCTCTGTACAGTTGTAATACATGTTGATCATTGTCTTCTGCAATT
rJMSF010K20+ TGAGACTTCAGATACCCTCTGTACAGTTGTAATACATGTTGATCATTGTCTTCTGCAATT
rJMSF040A12+ TGAGACTTCAGATACCCTCTGTACAGTTGTAATACATGTTGATCATTGTCTTCTGCAATT
rJMSF035O12+ TGAGACTTCAGATACCCTCTGTACAGTTGTAATACATGTTGATCATTGTCTTCTGCAATT
rJMFF045K18+ TGAGACTTCAGATACCCTCTGTACAGTTGTAATACATGTTGATCATTGTCTTCTGCAATT
____________________________________________________________
consensus TGAGACTTCAGATACCCTCTGTACAGTTGTAATACATGTTGATCATTGTCTTCTGCAATT
. : . : . : . : . : . :
rJMFF044P06+ CCCATTCTTTCATACCTTCCTTTGTCCAGTGTTAGTGTTTGGAATTTGTTTTATATTCTG
rJMSF010K20+ CCCATTCTTTCATACCTTCCTTTGTCCAGTGTTAGTGTTTGGAATTTGTTTTATATTCTG
rJMSF040A12+ CCCATTCTTTCATACCTTCCTTTGTCCAGTGTTAGTGTTTGGAATTTGTTTTATATTCTG
rJMSF035O12+ CCCATTCTTTCATACCTTCCTTTGTCCAGTGTTAGTGTTTGGAATTTGTTTTATATTCTG
rJMFF045K18+ CCCATTCTTTCATACCTTCCTTTGTCCAGTGTTAGTGTTTGGAATTTGTTTTATATTCTG
____________________________________________________________
consensus CCCATTCTTTCATACCTTCCTTTGTCCAGTGTTAGTGTTTGGAATTTGTTTTATATTCTG
. : . : . : . : . : . :
rJMFF044P06+ GCATC
rJMSF010K20+ GCATCTTCA-CAGTTGTGCTTTAGCTTAAGATTGCCAGA
rJMSF040A12+ GCATCTTCA-CAGTTGTGCTTTAGCTTAAGATTGCCAGAC
rJMSF035O12+ GCATCTTCACCAGTTGTGCTTTAGCTTAAGATTGCCAGAC
rJMFF045K18+ GCATCTTCA-CAGTTGTGCTTTAGCTTAAGATTGCCAGACATGATTTTGTGTATGCTAGA
____________________________________________________________
consensus GCATCTTCA-CAGTTGTGCTTTAGCTTAAGATTGCCAGACATGATTTTGTGTATGCTAGA
. : . : . : . : . : . :
rJMFF045K18+ TTCTAACTTAGCATTTGAACAAAACTCTTTTCACAAAAAAAAAAAAAAACTCTCCAGGGT
____________________________________________________________
consensus TTCTAACTTAGCATTTGAACAAAACTCTTTTCACAAAAAAAAAAAAAAACTCTCCAGGGT