Contig 008348:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF044P06Sequence637013459 (15)ref|XP_009598672.1|9e-56PREDICTED: transcription factor GTE7-like [Nicotiana tomentosiformis]615008348 (7)
JMFF045K18Sequence642013459 (15)ref|XP_009598672.1|1e-55PREDICTED: transcription factor GTE7-like [Nicotiana tomentosiformis]629008348 (7)
JMSF010K20Sequence241003579 (2)761008348 (7)
JMSF035O12Sequence665013459 (15)ref|XP_009598672.1|2e-60PREDICTED: transcription factor GTE7-like [Nicotiana tomentosiformis]669008348 (7)
JMSF039J16Sequence656013459 (15)ref|XP_009598672.1|1e-58PREDICTED: transcription factor GTE7-like [Nicotiana tomentosiformis]877008348 (7)emb|CAD13175.1|1e-65viroid RNA-binding protein [Solanum lycopersicum]
JMSF040A12Sequence659013459 (15)ref|XP_009598672.1|3e-59PREDICTED: transcription factor GTE7-like [Nicotiana tomentosiformis]860008348 (7)ref|NP_001234374.1|5e-12PSTVd RNA-binding protein Virp1d [Solanum lycopersicum] gb|AAG13810.1|AF190891_1
JMSF040A17Sequence656013459 (15)ref|XP_009598672.1|1e-58PREDICTED: transcription factor GTE7-like [Nicotiana tomentosiformis]865008348 (7)emb|CAD13175.1|8e-38viroid RNA-binding protein [Solanum lycopersicum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF039J16+ GGCCCATGGTGAAACAACCGA
                      ____________________________________________________________
consensus GGCCCATGGTGAAACAACCGA
 
. : . : . : . : . : . :
rJMSF039J16+ AGCCTAGGGCCAAGGATCCAAATAAGAGAGAAATGAGTATCGAGGAAAAGCATAAACTTG
                      ____________________________________________________________
consensus AGCCTAGGGCCAAGGATCCAAATAAGAGAGAAATGAGTATCGAGGAAAAGCATAAACTTG
 
. : . : . : . : . : . :
rJMSF040A17+ CTGGTGCAGATTATNAGGA
rJMSF039J16+ GACTTGGATTGCAGAGTTTGCCTCAAGAGAAGATGCCCCAACTGGTGCAGATTATAAGGA
                      ____________________________________________________________
consensus GACTTGGATTGCAGAGTTTGCCTCAAGAGAAGATGCCCCAACTGGTGCAGATTATAAGGA
 
. : . : . : . : . : . :
rJMSF040A17+ AGAGGAACGAGCATTTGGCACAAGATGGTGATGAAATTGAGCTGGACATTGAGGCTTTGG
rJMSF039J16+ AGAGGAACGAGCATTTGGCACAAGATGGTGATGAAATTGAGCTGGACATTGAGGCTTTGG
rJMSF040A12+ AAATTGAGCTGGACATTGAGGCTTTGG
                      ____________________________________________________________
consensus AGAGGAACGAGCATTTGGCACAAGATGGTGATGAAATTGAGCTGGACATTGAGGCTTTGG
 
. : . : . : . : . : . :
rJMSF040A17+ ACACTGAGACTCTTTGGGAGCTTGATCGATTCGTGA-CCAATTGGAAGAAGATGGTGAGC
rJMSF039J16+ ACACTGAGACTCTTTGGGAGCTTGATCGATTCGTGA-CCAATTGGAAGAAGATGGTGAGC
rJMSF040A12+ ACACTGAGACTCTTTGGGAGCTTGATCGATTCGTGACCCAATTGGAAGAAGATGGTGAGC
                      ____________________________________________________________
consensus ACACTGAGACTCTTTGGGAGCTTGATCGATTCGTGA-CCAATTGGAAGAAGATGGTGAGC
 
. : . : . : . : . : . :
rJMSF040A17+ AAAA-CCAAGAGACAAGCTTTAATAAGTAATTTAACAGCGCCAACTGCTGCTGCAGCTGC
rJMSF039J16+ AAAA-CCAAGAGACAAGCTTTAATAAGTAATTTAACAGCGCCAACTGCTGCTGCAGCTGC
rJMSF010K20+ AGAGACAAGCTTTAATAAGTAATTTAACAGCGCCAACTGCTGCTGCAGCTGC
rJMSF040A12+ AAAACCCAAGAGACAAGCTTTAATAAGTAATTTAACAGCGCCAACTGCTGCTGCAGCTGC
                      ____________________________________________________________
consensus AAAA-CCAAGAGACAAGCTTTAATAAGTAATTTAACAGCGCCAACTGCTGCTGCAGCTGC
 
. : . : . : . : . : . :
rJMSF040A17+ AGCTGCTACGACATCCAACGCCGAGAAGTATGATGGGGCTGCTCTAAGCGAGAAAATGGA
rJMSF039J16+ AGCTGCTACGACATCCAACGCCGAGGAGGATGATGGGGCTGCTCTAAGCGAGAAAATGGA
rJMFF044P06+ GAGAAAATGGA
rJMSF010K20+ AGCTGCTACGACATCCAACGCCGAGGAGGATGATGGGGCTGCTCTAAGCGAGAAAATGGA
rJMSF040A12+ AGCTGCTACGACATCCAACGCCGAGGAGGATGATGGGGCTGCTCTAAGCGAGAAAATGGA
                      ____________________________________________________________
consensus AGCTGCTACGACATCCAACGCCGAGGAGGATGATGGGGCTGCTCTAAGCGAGAAAATGGA
 
. : . : . : . : . : . :
rJMSF040A17+ TATGGATTCCCCCAAGAAGCCTAAAAAGGGTGAAGCTGGGGATGAGGATGTTGACATTGA
rJMSF039J16+ TATGGATTCCCCCAAGAAGCCTAAAAAGGGTGAAGCTGGGGATGAGGATGTTGACATTGA
rJMFF044P06+ TATGGATTCCCCCAAGAAG-CTAAAAAGGGTGAAGCTGGGGATGAGGATGTTGACATTGA
rJMSF010K20+ TATGGATTCCCCCAAGAAGCCTAAAAAGGGTGAAGCTGGGGATGAGGATGTTGACATTGA
rJMSF040A12+ TATGGATTCCCCCAAGAAGCCTAAAAAGGGTGAAGCTGGGGATGAGGATGTTGACATTGA
rJMSF035O12+ CCCCCAAGAAGCCTAAAAAGGGTGAAGCTGGGGATGAGGATGTTGACATTGA
                      ____________________________________________________________
consensus TATGGATTCCCCCAAGAAGCCTAAAAAGGGTGAAGCTGGGGATGAGGATGTTGACATTGA
 
. : . : . : . : . : . :
rJMSF040A17+ TGATGATATGCCTGCTACCAGTTTTCCTCCTATTGAAATTGAGAAGGACGAAGGTGGTGG
rJMSF039J16+ TGATGATATGCCTGCTACCAGTTTTCCTCCTATTGAAATTGAGAAGGACGAAGGTGGTGG
rJMFF044P06+ TGATGATATGCCTGCTACCAGTTTTCCTCCTATTGAAATTGAGAAGGACGAAGGTGGTGG
rJMSF010K20+ TGATGATATGCCTGCTACCAGTTTTCCTCCTATTGAAATTGAGAAGGACGAAGGTGGTGG
rJMSF040A12+ TGATGATATGCCTGCTACCAGTTTTCCTCCTATTGAAATTGAGAAGGACGAAGGTGGTGG
rJMSF035O12+ TGATGATATGCCTGCTACCAGTTTTCCTCCTATTGAAATTGAGAAGGACGAAGGTGGTGG
rJMFF045K18+ TATTGAAATTGAGAAGGACGAAGGTGGTGG
                      ____________________________________________________________
consensus TGATGATATGCCTGCTACCAGTTTTCCTCCTATTGAAATTGAGAAGGACGAAGGTGGTGG
 
. : . : . : . : . : . :
rJMSF040A17+ TCGAGATCCTGATAATAATGGCAGTAGTAGCTCTAGCAGTTCAAGTAGTTCAAGCAGTGA
rJMSF039J16+ TCGAGATCCTGATAATAATGGCAGTAGTAGCTCTAGCAGTTCAAGTAGTTCAAGCAGTGA
rJMFF044P06+ TCGAGATCCTGATAATAATGGCAGTAGTAGCTCTAGCAGTTCAAGTAGTTCAAGCAGTGA
rJMSF010K20+ TCGAGATCCTGATAATAATGGCAGTAGTAGCTCTAGCAGTTCAAGTAGTTCAAGCAGTGA
rJMSF040A12+ TCGAGATCCTGATAATAATGGCAGTAGTAGCTCTAGCAGTTCAAGTAGTTCAAGCAGTGA
rJMSF035O12+ TCGAGATCCTGATAATAATGGCAGTAGTAGCTCTAGCAGTTCAAGTAGTTCAAGCAGTGA
rJMFF045K18+ TCGAGATCCTGATAATAATGGCAGTAGTAGCTCTAGCAGTTCAAGTAGTTCAAGCAGTGA
                      ____________________________________________________________
consensus TCGAGATCCTGATAATAATGGCAGTAGTAGCTCTAGCAGTTCAAGTAGTTCAAGCAGTGA
 
. : . : . : . : . : . :
rJMSF040A17+ TTCGTCTTCTTCAAGTGGCTCTGATTCGGGGAGTTCTTCCGGGAGTGACTCAGATGCGGA
rJMSF039J16+ TTCGTCTTCTTCAAGTGGCTCTGATTCGGGGAGTTCTTCCGGGAGTGACTCAGATGCGGA
rJMFF044P06+ TTCGTCTTCTTCAAGTGGCTCTGATTCGGGGAGTTCTTCCGGGAGTGACTCAGATGCGGA
rJMSF010K20+ TTCGTCTTCTTCAAGTGGCTCTGATTCGGGGAGTTCTTCCGGGAGTGACTCAGATGCGGA
rJMSF040A12+ TTCGTCTTCTTCAAGTGGCTCTGATTCGGGGAGTTCTTCCGGGAGTGACTCAGATGCGGA
rJMSF035O12+ TTCGTCTTCTTCAAGTGGCTCTGATTCGGGGAGTTCTTCCGGGAGTGACTCAGATGCGGA
rJMFF045K18+ TTCGTCTTCTTCAAGTGGCTCTGATTCGGGGAGTTCTTCCGGGAGTGACTCAGATGCGGA
                      ____________________________________________________________
consensus TTCGTCTTCTTCAAGTGGCTCTGATTCGGGGAGTTCTTCCGGGAGTGACTCAGATGCGGA
 
. : . : . : . : . : . :
rJMSF040A17+ TGATGCACAATCTTGATTCTACCATGCCCAAGTTGAAGAGGCTCGAGAATCATCAGCTCG
rJMSF039J16+ TGATGCACAATCTTGATTCTACCATGCCCAAGTTGAAGAGGCTCGAGAATCATCAGCTCG
rJMFF044P06+ TGATGCACAATCTTGATTCTACCATGCCCAAGTTGAAGAGGCTCGAGAATCATCAGCTCG
rJMSF010K20+ TGATGCACAATCTTGATTCTACCATGCCCAAGTTGAAGAGGCTCGAGAATCATCAGCTCG
rJMSF040A12+ TGATGCACAATCTTGATTCTACCATGCCCAAGTTGAAGAGGCTCGAGAATCATCAGCTCG
rJMSF035O12+ TGATGCACAATCTTGATTCTACCATGCCCAAGTTGAAGAGGCTCGAGAATCATCAGCTCG
rJMFF045K18+ TGATGCACAATCTTGATTCTACCATGCCCAAGTTGAAGAGGCTCGAGAATCATCAGCTCG
                      ____________________________________________________________
consensus TGATGCACAATCTTGATTCTACCATGCCCAAGTTGAAGAGGCTCGAGAATCATCAGCTCG
 
. : . : . : . : . : . :
rJMSF040A17+ AGCTGTGGCACTCACCTTTTGTCGGTCTTTGTTACCTATGCTATTGTTTGTAATGAGGT
rJMSF039J16+ AGCTGTGGGACTCACCTTTTGTCGGTCTTTGTTACCTATGCTATTGTTTGTAATGAGGTG
rJMFF044P06+ AGCTGTGGCACTCACCTTTTGTCGGTCTTTGTTACCTATGCTATTGTTTGTAATGAGGTG
rJMSF010K20+ AGCTGTGGCACTCACCTTTTGTCGGTCTTTGTTACCTATGCTATTGTTTGTAATGAGGTG
rJMSF040A12+ AGCTGTGGCACTCACCTTTTGTCGGTCTTTGTTACCTATGCTATTGTTTGTAATGAGGTG
rJMSF035O12+ AGCTGTGGCACTCACCTTTTGTCGGTCTTTGTTACCTATGCTATTGTTTGTAATGAGGTG
rJMFF045K18+ AGCTGTGGCACTCACCTTTTGTCGGTCTTTGTTACCTATGCTATTGTTTGTAATGAGGTG
                      ____________________________________________________________
consensus AGCTGTGGCACTCACCTTTTGTCGGTCTTTGTTACCTATGCTATTGTTTGTAATGAGGTG
 
. : . : . : . : . : . :
rJMSF039J16+ TAGTGCCCAGCTTGTGGAGGAAAGAAGATAGATGCGTACTATGTATTGGCATTTGAGGTT
rJMFF044P06+ TAGTGCCCAGCTTGTGGAGGAAAGAAGATAGATGCATACTATGTATTGGCATTTGAGGTT
rJMSF010K20+ TAGTGCCCAGCTTGTGGAGGAAAGAAGATAGATGCATACTATGTATTGGCATTTGAGGTT
rJMSF040A12+ TAGTGCCCAGCTTGTGGAGGAAAGAAGATAGATGCATACTATGTATTGGCATTTGAGGTT
rJMSF035O12+ TAGTGCCCAGCTTGTGGAGGAAAGAAGATAGATGCATACTATGTATTGGCATTTGAGGTT
rJMFF045K18+ TAGTGCCCAGCTTGTGGAGGAAAGAAGATAGATGCATACTATGTATTGGCATTTGAGGTT
                      ____________________________________________________________
consensus TAGTGCCCAGCTTGTGGAGGAAAGAAGATAGATGCATACTATGTATTGGCATTTGAGGTT
 
. : . : . : . : . : . :
rJMSF039J16+ GCTTTTAGTTATGGCTCTTTAATGATTAATGATAGGGAAAATGAGAGAGATGTAGATGGT
rJMFF044P06+ GCTTTTAGTTATGGCTCTTTAATGATTAATGATAGGGAAAATGAGAGAGATGTAGATGGT
rJMSF010K20+ GCTTTTAGTTATGGCTCTTTAATGATTAATGATAGGGAAAATGAGAGAGATGTAGATGGT
rJMSF040A12+ GCTTTTAGTTATGGCTCTTTAATGATTAATGATAGGGAAAATGAGAGAGATGTAGATGGT
rJMSF035O12+ GCTTTTAGTTATGGCTCTTTAATGATTAATGATAGGGAAAATGAGAGAGATGTAGATGGT
rJMFF045K18+ GCTTTTAGTTATGGCTCTTTAATGATTAATGATAGGGAAAATGAGAGAGATGTAGATGGT
                      ____________________________________________________________
consensus GCTTTTAGTTATGGCTCTTTAATGATTAATGATAGGGAAAATGAGAGAGATGTAGATGGT
 
. : . : . : . : . : . :
rJMSF039J16+ TGAGACTTCAGATACCCT
rJMFF044P06+ TGAGACTTCAGATACCCTCTGTACAGTTGTAATACATGTTGATCATTGTCTTCTGCAATT
rJMSF010K20+ TGAGACTTCAGATACCCTCTGTACAGTTGTAATACATGTTGATCATTGTCTTCTGCAATT
rJMSF040A12+ TGAGACTTCAGATACCCTCTGTACAGTTGTAATACATGTTGATCATTGTCTTCTGCAATT
rJMSF035O12+ TGAGACTTCAGATACCCTCTGTACAGTTGTAATACATGTTGATCATTGTCTTCTGCAATT
rJMFF045K18+ TGAGACTTCAGATACCCTCTGTACAGTTGTAATACATGTTGATCATTGTCTTCTGCAATT
                      ____________________________________________________________
consensus TGAGACTTCAGATACCCTCTGTACAGTTGTAATACATGTTGATCATTGTCTTCTGCAATT
 
. : . : . : . : . : . :
rJMFF044P06+ CCCATTCTTTCATACCTTCCTTTGTCCAGTGTTAGTGTTTGGAATTTGTTTTATATTCTG
rJMSF010K20+ CCCATTCTTTCATACCTTCCTTTGTCCAGTGTTAGTGTTTGGAATTTGTTTTATATTCTG
rJMSF040A12+ CCCATTCTTTCATACCTTCCTTTGTCCAGTGTTAGTGTTTGGAATTTGTTTTATATTCTG
rJMSF035O12+ CCCATTCTTTCATACCTTCCTTTGTCCAGTGTTAGTGTTTGGAATTTGTTTTATATTCTG
rJMFF045K18+ CCCATTCTTTCATACCTTCCTTTGTCCAGTGTTAGTGTTTGGAATTTGTTTTATATTCTG
                      ____________________________________________________________
consensus CCCATTCTTTCATACCTTCCTTTGTCCAGTGTTAGTGTTTGGAATTTGTTTTATATTCTG
 
. : . : . : . : . : . :
rJMFF044P06+ GCATC
rJMSF010K20+ GCATCTTCA-CAGTTGTGCTTTAGCTTAAGATTGCCAGA
rJMSF040A12+ GCATCTTCA-CAGTTGTGCTTTAGCTTAAGATTGCCAGAC
rJMSF035O12+ GCATCTTCACCAGTTGTGCTTTAGCTTAAGATTGCCAGAC
rJMFF045K18+ GCATCTTCA-CAGTTGTGCTTTAGCTTAAGATTGCCAGACATGATTTTGTGTATGCTAGA
                      ____________________________________________________________
consensus GCATCTTCA-CAGTTGTGCTTTAGCTTAAGATTGCCAGACATGATTTTGTGTATGCTAGA
 
. : . : . : . : . : . :
rJMFF045K18+ TTCTAACTTAGCATTTGAACAAAACTCTTTTCACAAAAAAAAAAAAAAACTCTCCAGGGT
                      ____________________________________________________________
consensus TTCTAACTTAGCATTTGAACAAAACTCTTTTCACAAAAAAAAAAAAAAACTCTCCAGGGT