Contig 008333:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF026I13Sequence609008333 (6)ref|XP_010262459.1|4e-79PREDICTED: 3-isopropylmalate dehydratase large subunit [Nelumbo nucifera]
JMFF027P17Sequence533004567 (5)ref|XP_009804995.1|4e-41PREDICTED: 3-isopropylmalate dehydratase large subunit-like [Nicotiana sylvestr424008333 (6)gb|ABK93811.1|3e-55unknown [Populus trichocarpa]
JMFF037H17Sequence557004567 (5)ref|XP_009804995.1|4e-45PREDICTED: 3-isopropylmalate dehydratase large subunit-like [Nicotiana sylvestr778008333 (6)ref|XP_011073724.1|4e-120PREDICTED: 3-isopropylmalate dehydratase large subunit [Sesamum indicum]
JMFF044K11Sequence631004567 (5)ref|XP_009804995.1|7e-64PREDICTED: 3-isopropylmalate dehydratase large subunit-like [Nicotiana sylvestr614008333 (6)ref|XP_008679970.1|1e-76PREDICTED: 3-isopropylmalate dehydratase large subunit-like isoform X2 [Zea may
JMSF021L15Sequence699004567 (5)ref|XP_009804995.1|2e-86PREDICTED: 3-isopropylmalate dehydratase large subunit-like [Nicotiana sylvestr767008333 (6)ref|XP_010262459.1|9e-124PREDICTED: 3-isopropylmalate dehydratase large subunit [Nelumbo nucifera]
JMSF036H01Sequence655004567 (5)ref|XP_009804995.1|4e-109PREDICTED: 3-isopropylmalate dehydratase large subunit-like [Nicotiana sylvestr490008333 (6)ref|XP_010262459.1|1e-65PREDICTED: 3-isopropylmalate dehydratase large subunit [Nelumbo nucifera]

Alignment

This contig is upended


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rJMSF021L15+                                                    CCTGTTTACAGTGATGAA
rJMFF037H17+                                                           ACAGTGATGAN
                      ____________________________________________________________
consensus                                                       CCTGTTTACAGTGATGAA
 
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rJMSF021L15+          CAAGCCAGATTTCTTTCGGAGTACAGAATCGATTTATCAAAGTTGGAGCCCTTAGTGGCG
rJMFF037H17+          CAAGCCAGATTTCTTTCGGAGTACAGAATCGATGTATCAAAGTNGGAGCCCTTAGTGGCG
                      ____________________________________________________________
consensus             CAAGCCAGATTTCTTTCGGAGTACAGAATCGATTTATCAAAGTTGGAGCCCTTAGTGGCG
 
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rJMSF021L15+          AAGCCTCATTCCCCTGATAATCGTGCATTAGCAAGAGAATGCAAAGATGTCAAAATCGAC
rJMFF037H17+          AAGCCTCATTCCCCTGATAATCGTGCATTAGCAAGAGAATGCAAAGATGTCAAAATCGAC
                      ____________________________________________________________
consensus             AAGCCTCATTCCCCTGATAATCGTGCATTAGCAAGAGAATGCAAAGATGTCAAAATCGAC
 
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rJMSF021L15+          AGAGTTTATATTGGATCGTGTACTGGTGGGAAAACCGAGGACTTCATGGCTGCTGCCAAA
rJMFF026I13+                                                GGACTTCATGGCTGCTGCCAAA
rJMFF037H17+          AGAGTTTATATTGGATCGTGTACTGGTGGGAAAACCGAGGACTTCATGGCTGCTGCCAAA
rJMFF044K11+                                                        TGGCTGCTGCCAAA
                      ____________________________________________________________
consensus             AGAGTTTATATTGGATCGTGTACTGGTGGGAAAACCGAGGACTTCATGGCTGCTGCCAAA
 
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rJMSF036H01+                       CGGGGGGTAAAAAGGTAAAAGTTCCAACGTTCCTTGTTCCTGCTANT
rJMSF021L15+          GTTTTTCTAGCTGCGGGGGGTAAAAAGGTAAAAGTTCCAACGTTCCTTGTTCCTGCTACT
rJMFF026I13+          GTTTTTCTAGCTGCGGGGGGTAAAAAGGTAAAAGTTCCAACGTTCCTTGTTCCTGCTACT
rJMFF037H17+          GTTTTTCTAGCTGCGGGGGGTAAAAAGGTAAAAGTTCCAACGTTCCTTGTTCCTGCTACT
rJMFF044K11+          GTTTTTCTAGCTGCGGGGGGTAAAAAGGTAAAAGTTCCAACGTTCCTTGTTCCTGCTACT
                      ____________________________________________________________
consensus             GTTTTTCTAGCTGCGGGGGGTAAAAAGGTAAAAGTTCCAACGTTCCTTGTTCCTGCTACT
 
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rJMSF036H01+          CAAAAGGTCTGGATGGANGTATATAGCCTCCCAGTTCCGGGATCTGGCGGGAAAACTTGT
rJMFF027P17+                             TATATAGCCTCCCAGTTCCGGGATCTGGCGGGAAAACTTGT
rJMSF021L15+          CAAAAGGTCTGGATGGACGTATATAGCCTCCCAGTTCCGGGATCTGGCGGGAAAACTTGT
rJMFF026I13+          CAAAAGGTCTGGATGGACGTATATAGCCTCCCAGTTCCGGGATCTGGCGGGAAAACTTGT
rJMFF037H17+          CAAAAGGTCTGGATGGACGTATATAGCCTCCCAGTTCCGGGATCTGGCGGGAAAACTTGT
rJMFF044K11+          CAAAAGGTCTGGATGGACGTATATAGCCTCCCAGTTCCGGGATCTGGCGGGAAAACTTGT
                      ____________________________________________________________
consensus             CAAAAGGTCTGGATGGACGTATATAGCCTCCCAGTTCCGGGATCTGGCGGGAAAACTTGT
 
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rJMSF036H01+          TCCCAGATTTTCGAGGAAGCGGGTTGTGATACNCCTNCAAGTCCTAGTTGTGGGGCTTGT
rJMFF027P17+          TCCCAGGTTTTCGAGGAAGCGGGTTGTGATACGCCTGCAAGTCCTAGTTGTGGGGCTTGT
rJMSF021L15+          TCCCAGATTTTCGAGGAAGCGGGTTGTGATACGCCTGCAAGTCCTAGTTGTGGGGCTTGT
rJMFF026I13+          TCCCAGATTTTCGAGGAAGCGGGTTGTGATACGCCTGCAAGTCCTAGTTGTGGGGCTTGT
rJMFF037H17+          TCCCAGATTTTCGAGGAAGCGGGTTGTGATACGCCTGCAAGTCCTAGTTGTGGGGCTTGT
rJMFF044K11+          TCCCAGATTTTCGAGGAAGCGGGTTGTGATACGCCTGCAAGTCCTAGTTGTGGGGCTTGT
                      ____________________________________________________________
consensus             TCCCAGATTTTCGAGGAAGCGGGTTGTGATACGCCTGCAAGTCCTAGTTGTGGGGCTTGT
 
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rJMSF036H01+          NTGGGTGGCCCTCGAGACACNTATGCACGCATGAATGANCCGCTGNTATGCGTNTCAACC
rJMFF027P17+          TTGGGTGGCCCTNGAGACACTTATGCACGCATGAATGANCCNCTGGTATGCGTCTCAACC
rJMSF021L15+          TTGGGTGGCCCTCGAGACACTTATGCACGCATGAATGAACCGCTGGTATGCGTCTCAACC
rJMFF026I13+          TTGGGTGGCCCTCGAGACACTTATGCACGCATGAATGAACCGCTGGTATGCGTCTCAACC
rJMFF037H17+          TTGGGTGGCCCTCGAGACACTTATGCACGCATGAATGAACCGCTGGTATGCGTCTCAACC
rJMFF044K11+          TTGGGTGGCCCTCGAGACACTTATGCACGCATGAATGAACCGCTGGTATGCGTCTCAACC
                      ____________________________________________________________
consensus             TTGGGTGGCCCTCGAGACACTTATGCACGCATGAATGAACCGCTGGTATGCGTCTCAACC
 
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rJMSF036H01+          NCGAACAGAAACTTCCCTGGCCGAATGGGCCACAAGGAAGGCCAAGTTTATCTCGCATCT
rJMFF027P17+          ACGAACAGAAACTTCCCTGGCCGAANGGGCCACAAGGAAGGCCAAGTTTATCTCGCATCT
rJMSF021L15+          ACGAACAGAAACTTCCCTGGCCGAATGGGCCACAAGGAAGGCCAAGTTTATCTCGCATCT
rJMFF026I13+          ACGAACAGAAACTTCCCTGGCCGAATGGGCCACAAGGAAGGCCAAGTTTATCTCGCATCT
rJMFF037H17+          ACGAACAGAAACTTCCCTGGCCGAATGGGCCACAAGGAAGGCCAAGTTTATCTCGCATCT
rJMFF044K11+          ACGAACAGAAACTTCCCTGGCCGAATGGGCCACAAGGAAGGCCAAGTTTATCTCGCATCT
                      ____________________________________________________________
consensus             ACGAACAGAAACTTCCCTGGCCGAATGGGCCACAAGGAAGGCCAAGTTTATCTCGCATCT
 
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rJMSF036H01+          CCATACACAGCTGCAGCATCGGCGCTGACTGGTTTCGTCANTGATCCCCGAGACTTTNTG
rJMFF027P17+          CCATACACAGCTGCAGCATCGGCGCTGACTGGTTTCGTCACTGATCCCCGAGACTTTTTG
rJMSF021L15+          CCATACACAGCTGCAGCATCGGCGCTGACTGGTTTCGTCACTGATCCCCGAGACTTTTTG
rJMFF026I13+          CCATACACAGCTGCAGCATCGGCGCTGACTGGTTTCGTCACTGATCCCCGAGACTTTTTG
rJMFF037H17+          CCATACACAGCTGCAGCATCGGCGCTGACTGGTTTCGTCACTGATCCCCGAGACTTTTTG
rJMFF044K11+          CCATACACAGCTGCAGCATCGGCGCTGACTGGTTTCGTCACTGATCCCCGAGACTTTTTG
                      ____________________________________________________________
consensus             CCATACACAGCTGCAGCATCGGCGCTGACTGGTTTCGTCACTGATCCCCGAGACTTTTTG
 
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rJMSF036H01+          CAGTAAGGTTCTCAATAAACTGGCATGGATGATTAGATTTTGATCAGAACTCGATATGTT
rJMFF027P17+          CAGTAAGGTTCTCAATAAACTTGCATGGATGATTAGATTTTGATCAGAACTCGATATGTT
rJMSF021L15+          CAGTAAGGTTCTCAATAAACTTGCATGGATGATTAGATTTTGATCAGAACTCGATATGTT
rJMFF026I13+          CAGTAAGGTTCTCAATAAACTTGCATGGATGATTAGATTTTGATCAGAACTCGATATGTT
rJMFF037H17+          CAGTAAGGTTCTCAATAAACTTGCATGGATGATTAGATTTTGATCAGAACTCGATATGTT
rJMFF044K11+          CAGTAAGGTTCTCAATAAACTTGCATGGATGATTAGATTTTGATCAGAACTCGATATGTT
                      ____________________________________________________________
consensus             CAGTAAGGTTCTCAATAAACTTGCATGGATGATTAGATTTTGATCAGAACTCGATATGTT
 
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rJMSF036H01+          TTGTNTTGCGTTCTCTTTCTGAAGTGAGGTAAGAAAAATGTGTTTCTAGAC         
rJMFF027P17+          TTGTATTGCGTTCTCTTTCTGAAGTGAGGTAAGAAAAATGTGTTTCTAGACACAGGATGA
rJMSF021L15+          TTGTATTGCGTTCTCTTTCTGAAGTGAGGTAAGAAAAATGTGTTTCTAGACACAGGATGA
rJMFF026I13+          TTGTATTGCGTTCTCTTTCTGAAGTGAGGTAAGAAAAATGTGTTTCTAGACACAGGATGA
rJMFF037H17+          TTGTATTGCGTTCTCTTTCTGAAGTGAGGTAAGAAAAATGTGTTTCTAGACACAGGATGA
rJMFF044K11+          TTGTATTGCGTTCTCTTTCTGAAGTGAGGTAAGAAAAATGTGTTTCTAGACACAGGATGA
                      ____________________________________________________________
consensus             TTGTATTGCGTTCTCTTTCTGAAGTGAGGTAAGAAAAATGTGTTTCTAGACACAGGATGA
 
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rJMFF027P17+          GTATTGTTAAACTATGTAAACAT                                     
rJMSF021L15+          GTATTGTTAAACTATGTAAACATGATCACAAGTATGATCTTTTCCCACCATATAAAATAA
rJMFF026I13+          GTATTGTTAAACTATGTAAACATGATCACAAGTATGATCTTTTCCCACCATATAAAATAA
rJMFF037H17+          GTATTGTTAAACTATGTAAACATGATCACAAGTATGATCTTTTCCCACCATATAAAATAA
rJMFF044K11+          GTATTGTTAAACTATGTAAACATGATCACAAGTATGATCTTTTCCCACCATATAAAATAA
                      ____________________________________________________________
consensus             GTATTGTTAAACTATGTAAACATGATCACAAGTATGATCTTTTCCCACCATATAAAATAA
 
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rJMSF021L15+          GTGCTGTTAAGACTGTTACCAGT                                     
rJMFF026I13+          GTGCTGTTAAGACTGTTACCAGTTGGAAACT                             
rJMFF037H17+          GTGCTGTTAAGACTGTTACCAGTTGGAAACT                             
rJMFF044K11+          GTGCTGTTAAGACTGTTACCAGTTGGAAACTTGGAATAATAAGTCGAATGTGATCTTTGT
                      ____________________________________________________________
consensus             GTGCTGTTAAGACTGTTACCAGTTGGAAACTTGGAATAATAAGTCGAATGTGATCTTTGT