Contig 008328:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF024A21Sequence527002095 (11)ref|XP_009794337.1|124PREDICTED: uncharacterized protein LOC104241118 [Nicotiana sylvestris]637008328 (3)emb|CDP00371.1|7e-63unnamed protein product [Coffea canephora]
JMFF026H24Sequence535002095 (11)ref|XP_009794337.1|124PREDICTED: uncharacterized protein LOC104241118 [Nicotiana sylvestris]767008328 (3)emb|CDP00371.1|3e-62unnamed protein product [Coffea canephora]
JMFF043O18Sequence639002095 (11)ref|XP_009794337.1|150PREDICTED: uncharacterized protein LOC104241118 [Nicotiana sylvestris]639008328 (3)emb|CDP00371.1|2e-62unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMFF026H24+                                                            TGTGTATGTA
                      ____________________________________________________________
consensus                                                               TGTGTATGTA
 
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rJMFF026H24+          CTAACTCATAGGGAAAACCAGTTGTGTACGATGAAAACTCGGAGGAACCAGAGGTGAGTG
                      ____________________________________________________________
consensus             CTAACTCATAGGGAAAACCAGTTGTGTACGATGAAAACTCGGAGGAACCAGAGGTGAGTG
 
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rJMFF026H24+          CATCAAAGAATTCAAAATCTTTGAAGAAATTTGGAGCAGTTTTTTCTTCGACTGCCATGT
                      ____________________________________________________________
consensus             CATCAAAGAATTCAAAATCTTTGAAGAAATTTGGAGCAGTTTTTTCTTCGACTGCCATGT
 
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rJMFF024A21+                                AGTGAAGTTGAAAGGGAGCTTGGGTTATTGTTTTCCAA
rJMFF026H24+          CTTGAAGAGTTCTTGGTATTACAGTGAAGTTGAAAGGGAGCTTGGGTTATTGTTTTCCAA
rJMFF043O18+                                AGTGAAGTTGAAAGGGAGCTTGGGTTATTGTTTTCCAA
                      ____________________________________________________________
consensus             CTTGAAGAGTTCTTGGTATTACAGTGAAGTTGAAAGGGAGCTTGGGTTATTGTTTTCCAA
 
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rJMFF024A21+          AGGTGGGAAGTGGAGAAATCAAGCTAAGCAGACAGGAACTGGCACAAAATTTCAGATGGT
rJMFF026H24+          AGGTGGGAAGTGGAGAAATCAAGCTAAGCAGACAGGAACTGGCACAAAATTTCAGATGGT
rJMFF043O18+          AGGTGGGAAGTGGAGAAATCAAGCTAAGCAGACAGGAACTGGCACAAAATTTCAGATGGT
                      ____________________________________________________________
consensus             AGGTGGGAAGTGGAGAAATCAAGCTAAGCAGACAGGAACTGGCACAAAATTTCAGATGGT
 
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rJMFF024A21+          TGTTGAAGATGTCAGAGAAGGTGTTCTGGTGTTTGAAGATGGTGATGAAGCTGTAAAATA
rJMFF026H24+          TGTTGAAGATGTCAGAGAAGGTGTTCTGGTGTTTGAAGATGGTGATGAAGCTGTAAAATA
rJMFF043O18+          TGTTGAAGATGTCAGAGAAGGTGTTCTGGTGTTTGAAGATGGTGATGAAGCTGTAAAATA
                      ____________________________________________________________
consensus             TGTTGAAGATGTCAGAGAAGGTGTTCTGGTGTTTGAAGATGGTGATGAAGCTGTAAAATA
 
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rJMFF024A21+          CTGCGACTTACTCCAAGGAGGAGGTCAAAATTGCGAAGGCGTTGCAGAGATTGAAGCATC
rJMFF026H24+          CTGCGACTTACTCCAAGGAGGAGGTCAAAATTGCGAAGGCGTTGCAGAGATTGAAGCATC
rJMFF043O18+          CTGCGACTTACTCCAAGGAGGAGGTCAAAATTGCGAAGGCGTTGCAGAGATTGAAGCATC
                      ____________________________________________________________
consensus             CTGCGACTTACTCCAAGGAGGAGGTCAAAATTGCGAAGGCGTTGCAGAGATTGAAGCATC
 
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rJMFF024A21+          CTCGGTATTTGATCTGTGCCGGAAGATGAGGGCGTTGGCGGTTCTGTTTCGCAGGGGAAG
rJMFF026H24+          CTCGGTATTTGATCTGTGCCGGAAGATGAGGGCGTTGGCGGTTCTGTTTCGCAGGGGAAG
rJMFF043O18+          CTCGGTATTTGATCTGTGCCGGAAGATGAGGGCGTTGGCGGTTCTGTTTCGCAGGGGAAG
                      ____________________________________________________________
consensus             CTCGGTATTTGATCTGTGCCGGAAGATGAGGGCGTTGGCGGTTCTGTTTCGCAGGGGAAG
 
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rJMFF024A21+          AACGCCTCCCCGGCCTGAAAATCTCAAACTCAACTTGAGAGCCCGTAAACACTCCCTGGA
rJMFF026H24+          AACGCCTCCCCGGCCTGAAAATCTCAAACTCAACTTGAGAGCCCGTAAACACTCCCTGGA
rJMFF043O18+          AACGCCTCCCCGGCCTGAAAATCTCAAACTCAACTTGAGAGCCCGTAAACACTCCCTGGA
                      ____________________________________________________________
consensus             AACGCCTCCCCGGCCTGAAAATCTCAAACTCAACTTGAGAGCCCGTAAACACTCCCTGGA
 
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rJMFF024A21+          AGATCAATAGGAACACGAGTCGAGGCTCCATCAGCAGAGAATATGTCCTTCTGTCTGCAC
rJMFF026H24+          AGATCAATAGGAACACGAGTCGAGGCTCCATCAGCAGAGAATATGTCCTTCTGTCTGCAC
rJMFF043O18+          AGATCAATAGGAACACGAGTCGAGGCTCCATCAGCAGAGAATATGTCCTTCTGTCTGCAC
                      ____________________________________________________________
consensus             AGATCAATAGGAACACGAGTCGAGGCTCCATCAGCAGAGAATATGTCCTTCTGTCTGCAC
 
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rJMFF024A21+          CAAAAACCAATTTGCAATACTCTCATTAACTGTAATGTGTTTGTGACCATTGATATTTGA
rJMFF026H24+          CAAAAACCAATTTGCAATACTCTCATTAACTGTAATGTGTTTGTGACCATTGATATTTGA
rJMFF043O18+          CAAAAACCAATTTGCAATACTCTCATTAACTGTAATGTGTTTGTGACCATTGATATTTGA
                      ____________________________________________________________
consensus             CAAAAACCAATTTGCAATACTCTCATTAACTGTAATGTGTTTGTGACCATTGATATTTGA
 
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rJMFF024A21+          TCATTGCCATATCCTCCTATACGGTAAATCCTGATAGAATACAAGTGTTTCAGTTCAGAA
rJMFF026H24+          TCATTGCCATATCCTCCTATACGGTAAATCCTGATAGAATACAAGTGTTTCAGTTCAGAA
rJMFF043O18+          TCATTGCCATATCCTCCTATACGGTAAATCCTGATAGAATACAAGTGTTTCAGTTCAGAA
                      ____________________________________________________________
consensus             TCATTGCCATATCCTCCTATACGGTAAATCCTGATAGAATACAAGTGTTTCAGTTCAGAA
 
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rJMFF024A21+          TTATTGAACCATGGGAAAATTTAGTGAAAAGTTCTTCCAAAATATATTGGAGCATACATA
rJMFF026H24+          TTATTGAACCATGGGAAAATTTAGTGAAAAGTTCTTCCAAAATATATTGGAGCATACATA
rJMFF043O18+          TTATTGAACCATGGGAAAATTTAGTGAAAAGTTCTTCCAAAATATATTGGAGCATACATA
                      ____________________________________________________________
consensus             TTATTGAACCATGGGAAAATTTAGTGAAAAGTTCTTCCAAAATATATTGGAGCATACATA
 
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rJMFF024A21+          AGATAGGCCACC                                                
rJMFF026H24+          AGATAGGCCACCATATGACTTCAACAATTCAATCA                         
rJMFF043O18+          AGATAGGCCACCATATGACTTCAACAATTCAATCAAAAAAAAAAAAAAACTCTCCAGGGT
                      ____________________________________________________________
consensus             AGATAGGCCACCATATGACTTCAACAATTCAATCAAAAAAAAAAAAAAACTCTCCAGGGT