clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF024A21 | Sequence | 527 | 002095 (11) | ref|XP_009794337.1| | 124 | PREDICTED: uncharacterized protein LOC104241118 [Nicotiana sylvestris] | 637 | 008328 (3) | emb|CDP00371.1| | 7e-63 | unnamed protein product [Coffea canephora] |
JMFF026H24 | Sequence | 535 | 002095 (11) | ref|XP_009794337.1| | 124 | PREDICTED: uncharacterized protein LOC104241118 [Nicotiana sylvestris] | 767 | 008328 (3) | emb|CDP00371.1| | 3e-62 | unnamed protein product [Coffea canephora] |
JMFF043O18 | Sequence | 639 | 002095 (11) | ref|XP_009794337.1| | 150 | PREDICTED: uncharacterized protein LOC104241118 [Nicotiana sylvestris] | 639 | 008328 (3) | emb|CDP00371.1| | 2e-62 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMFF026H24+ TGTGTATGTA
____________________________________________________________
consensus TGTGTATGTA
. : . : . : . : . : . :
rJMFF026H24+ CTAACTCATAGGGAAAACCAGTTGTGTACGATGAAAACTCGGAGGAACCAGAGGTGAGTG
____________________________________________________________
consensus CTAACTCATAGGGAAAACCAGTTGTGTACGATGAAAACTCGGAGGAACCAGAGGTGAGTG
. : . : . : . : . : . :
rJMFF026H24+ CATCAAAGAATTCAAAATCTTTGAAGAAATTTGGAGCAGTTTTTTCTTCGACTGCCATGT
____________________________________________________________
consensus CATCAAAGAATTCAAAATCTTTGAAGAAATTTGGAGCAGTTTTTTCTTCGACTGCCATGT
. : . : . : . : . : . :
rJMFF024A21+ AGTGAAGTTGAAAGGGAGCTTGGGTTATTGTTTTCCAA
rJMFF026H24+ CTTGAAGAGTTCTTGGTATTACAGTGAAGTTGAAAGGGAGCTTGGGTTATTGTTTTCCAA
rJMFF043O18+ AGTGAAGTTGAAAGGGAGCTTGGGTTATTGTTTTCCAA
____________________________________________________________
consensus CTTGAAGAGTTCTTGGTATTACAGTGAAGTTGAAAGGGAGCTTGGGTTATTGTTTTCCAA
. : . : . : . : . : . :
rJMFF024A21+ AGGTGGGAAGTGGAGAAATCAAGCTAAGCAGACAGGAACTGGCACAAAATTTCAGATGGT
rJMFF026H24+ AGGTGGGAAGTGGAGAAATCAAGCTAAGCAGACAGGAACTGGCACAAAATTTCAGATGGT
rJMFF043O18+ AGGTGGGAAGTGGAGAAATCAAGCTAAGCAGACAGGAACTGGCACAAAATTTCAGATGGT
____________________________________________________________
consensus AGGTGGGAAGTGGAGAAATCAAGCTAAGCAGACAGGAACTGGCACAAAATTTCAGATGGT
. : . : . : . : . : . :
rJMFF024A21+ TGTTGAAGATGTCAGAGAAGGTGTTCTGGTGTTTGAAGATGGTGATGAAGCTGTAAAATA
rJMFF026H24+ TGTTGAAGATGTCAGAGAAGGTGTTCTGGTGTTTGAAGATGGTGATGAAGCTGTAAAATA
rJMFF043O18+ TGTTGAAGATGTCAGAGAAGGTGTTCTGGTGTTTGAAGATGGTGATGAAGCTGTAAAATA
____________________________________________________________
consensus TGTTGAAGATGTCAGAGAAGGTGTTCTGGTGTTTGAAGATGGTGATGAAGCTGTAAAATA
. : . : . : . : . : . :
rJMFF024A21+ CTGCGACTTACTCCAAGGAGGAGGTCAAAATTGCGAAGGCGTTGCAGAGATTGAAGCATC
rJMFF026H24+ CTGCGACTTACTCCAAGGAGGAGGTCAAAATTGCGAAGGCGTTGCAGAGATTGAAGCATC
rJMFF043O18+ CTGCGACTTACTCCAAGGAGGAGGTCAAAATTGCGAAGGCGTTGCAGAGATTGAAGCATC
____________________________________________________________
consensus CTGCGACTTACTCCAAGGAGGAGGTCAAAATTGCGAAGGCGTTGCAGAGATTGAAGCATC
. : . : . : . : . : . :
rJMFF024A21+ CTCGGTATTTGATCTGTGCCGGAAGATGAGGGCGTTGGCGGTTCTGTTTCGCAGGGGAAG
rJMFF026H24+ CTCGGTATTTGATCTGTGCCGGAAGATGAGGGCGTTGGCGGTTCTGTTTCGCAGGGGAAG
rJMFF043O18+ CTCGGTATTTGATCTGTGCCGGAAGATGAGGGCGTTGGCGGTTCTGTTTCGCAGGGGAAG
____________________________________________________________
consensus CTCGGTATTTGATCTGTGCCGGAAGATGAGGGCGTTGGCGGTTCTGTTTCGCAGGGGAAG
. : . : . : . : . : . :
rJMFF024A21+ AACGCCTCCCCGGCCTGAAAATCTCAAACTCAACTTGAGAGCCCGTAAACACTCCCTGGA
rJMFF026H24+ AACGCCTCCCCGGCCTGAAAATCTCAAACTCAACTTGAGAGCCCGTAAACACTCCCTGGA
rJMFF043O18+ AACGCCTCCCCGGCCTGAAAATCTCAAACTCAACTTGAGAGCCCGTAAACACTCCCTGGA
____________________________________________________________
consensus AACGCCTCCCCGGCCTGAAAATCTCAAACTCAACTTGAGAGCCCGTAAACACTCCCTGGA
. : . : . : . : . : . :
rJMFF024A21+ AGATCAATAGGAACACGAGTCGAGGCTCCATCAGCAGAGAATATGTCCTTCTGTCTGCAC
rJMFF026H24+ AGATCAATAGGAACACGAGTCGAGGCTCCATCAGCAGAGAATATGTCCTTCTGTCTGCAC
rJMFF043O18+ AGATCAATAGGAACACGAGTCGAGGCTCCATCAGCAGAGAATATGTCCTTCTGTCTGCAC
____________________________________________________________
consensus AGATCAATAGGAACACGAGTCGAGGCTCCATCAGCAGAGAATATGTCCTTCTGTCTGCAC
. : . : . : . : . : . :
rJMFF024A21+ CAAAAACCAATTTGCAATACTCTCATTAACTGTAATGTGTTTGTGACCATTGATATTTGA
rJMFF026H24+ CAAAAACCAATTTGCAATACTCTCATTAACTGTAATGTGTTTGTGACCATTGATATTTGA
rJMFF043O18+ CAAAAACCAATTTGCAATACTCTCATTAACTGTAATGTGTTTGTGACCATTGATATTTGA
____________________________________________________________
consensus CAAAAACCAATTTGCAATACTCTCATTAACTGTAATGTGTTTGTGACCATTGATATTTGA
. : . : . : . : . : . :
rJMFF024A21+ TCATTGCCATATCCTCCTATACGGTAAATCCTGATAGAATACAAGTGTTTCAGTTCAGAA
rJMFF026H24+ TCATTGCCATATCCTCCTATACGGTAAATCCTGATAGAATACAAGTGTTTCAGTTCAGAA
rJMFF043O18+ TCATTGCCATATCCTCCTATACGGTAAATCCTGATAGAATACAAGTGTTTCAGTTCAGAA
____________________________________________________________
consensus TCATTGCCATATCCTCCTATACGGTAAATCCTGATAGAATACAAGTGTTTCAGTTCAGAA
. : . : . : . : . : . :
rJMFF024A21+ TTATTGAACCATGGGAAAATTTAGTGAAAAGTTCTTCCAAAATATATTGGAGCATACATA
rJMFF026H24+ TTATTGAACCATGGGAAAATTTAGTGAAAAGTTCTTCCAAAATATATTGGAGCATACATA
rJMFF043O18+ TTATTGAACCATGGGAAAATTTAGTGAAAAGTTCTTCCAAAATATATTGGAGCATACATA
____________________________________________________________
consensus TTATTGAACCATGGGAAAATTTAGTGAAAAGTTCTTCCAAAATATATTGGAGCATACATA
. : . : . : . : . : . :
rJMFF024A21+ AGATAGGCCACC
rJMFF026H24+ AGATAGGCCACCATATGACTTCAACAATTCAATCA
rJMFF043O18+ AGATAGGCCACCATATGACTTCAACAATTCAATCAAAAAAAAAAAAAAACTCTCCAGGGT
____________________________________________________________
consensus AGATAGGCCACCATATGACTTCAACAATTCAATCAAAAAAAAAAAAAAACTCTCCAGGGT