Contig 008319:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF043C24Sequence618003264 (3)gb|KDO54132.1|7e-90hypothetical protein CISIN_1g012534mg [Citrus sinensis]650008319 (3)ref|XP_009794830.1|4e-69PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial [Nic
JMFF046F12Sequence499003264 (3)gb|KDO54132.1|1e-76hypothetical protein CISIN_1g012534mg [Citrus sinensis]386008319 (3)ref|XP_008242592.1|1e-28PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial isof
JMSF043O11Sequence711003264 (3)gb|KDO54132.1|8e-40hypothetical protein CISIN_1g012534mg [Citrus sinensis]535008319 (3)ref|XP_009794830.1|2e-68PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial [Nic

Alignment

This contig is upended


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rJMSF043O11+                           AACATTTGGTGGCAACAAGACTATCAACGAGATAATGAAGGAG
rJMFF043C24+                    TAATTTCAACATTTGGTGGCAACAAGACTATCAACGAGATAATGAAGGAG
                      ____________________________________________________________
consensus                       TAATTTCAACATTTGGTGGCAACAAGACTATCAACGAGATAATGAAGGAG
 
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rJMSF043O11+          CTAGAAAATCATCAGGAGAGTGCTGATACATTAGTGGCTGAGTGGGCCAAGGATGCTTTG
rJMFF043C24+          CTAGAAAATCATCAGGAGAGTGCTGATACATTAGTGGCTGAGTGGGCCAAGGATGCTTTG
                      ____________________________________________________________
consensus             CTAGAAAATCATCAGGAGAGTGCTGATACATTAGTGGCTGAGTGGGCCAAGGATGCTTTG
 
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rJMSF043O11+          CAAGGGCTTAGAAAGGGTGCCCCCTTTTCTCTTCATCTCACTCAAAAGTATTTCTCCAAA
rJMFF043C24+          CAAGGGCTTAGAAAGGGTGCCCCCTTTTCTCTTCATCTCACTCAAAAGTATTTCTCCAAA
                      ____________________________________________________________
consensus             CAAGGGCTTAGAAAGGGTGCCCCCTTTTCTCTTCATCTCACTCAAAAGTATTTCTCCAAA
 
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rJMSF043O11+          GTTGCAGCTGCTCGCGGATGCAATAACAATATCTTATCAAAGCTAACTGGGGTGATGAAA
rJMFF046F12+                                                                ATGAAA
rJMFF043C24+          GTTGCAGCTGCTCGCGGATGCAATAACAATATCTTATCAAAGCTAACTGGGGTGATGAAA
                      ____________________________________________________________
consensus             GTTGCAGCTGCTCGCGGATGCAATAACAATATCTTATCAAAGCTAACTGGGGTGATGAAA
 
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rJMSF043O11+          ACTGAGTATCGCATTGCTTTGAGATCTTCTGTCCGAAATGATTTTGCTGAAGGTGTTCGT
rJMFF046F12+          ACTGAGTATCGCATTGCTTTGAGATCTTCTGTCCGAAATGATTTTGCTGAAGGTGTTCGT
rJMFF043C24+          ACTGAGTATCGCATTGCTTTGAGATCTTCTGTCCGAAATGATTTTGCTGAAGGTGTTCGT
                      ____________________________________________________________
consensus             ACTGAGTATCGCATTGCTTTGAGATCTTCTGTCCGAAATGATTTTGCTGAAGGTGTTCGT
 
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rJMSF043O11+          GCTGTTTTGGTGGACAAGGATCAGAATCCAAAATGGAATCCATCAAGCTTGGAGGAGGTT
rJMFF046F12+          GCTGTTTTGGTGGACAAGGATCAGAATCCAAAATGGAATCCATCAAGCTTGGAGGAGGTT
rJMFF043C24+          GCTGTTTTGGTGGACAAGGATCAGAATCCAAAATGGAATCCATCAAGCTTGGAGGAGGTT
                      ____________________________________________________________
consensus             GCTGTTTTGGTGGACAAGGATCAGAATCCAAAATGGAATCCATCAAGCTTGGAGGAGGTT
 
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rJMSF043O11+          AATCCCAGTGAGGTGGAGGCTGTATTTGAACCCCTAAGCCCAGAAATAGGAGACCTGAAT
rJMFF046F12+          AATCCCAGTGAGGTGGAGGCTGTATTTGAACCCCTAAGCCCAGAAATAGGAGACCTGAAT
rJMFF043C24+          AATCCCAGTGAGGTGGAGGCTGTATTTGAACCCCTAAGCCCAGAAATAGGAGACCTGAAT
                      ____________________________________________________________
consensus             AATCCCAGTGAGGTGGAGGCTGTATTTGAACCCCTAAGCCCAGAAATAGGAGACCTGAAT
 
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rJMSF043O11+          GTATAAGGTTCCTTTTTGTTGCCAGCAATAGTCAATAGGGATGGAACTTGGGAAGTATCC
rJMFF046F12+          GTATAAGGTTCCTTTTTGTTGCCAGCAATAGTCAATAGGGATGGAACTTGGGAAGTATCC
rJMFF043C24+          GTATAAGGTTCCTTTTTGTTGCCAGCAATAGTCAATAGGGATGGAACTTGGGAAGTATCC
                      ____________________________________________________________
consensus             GTATAAGGTTCCTTTTTGTTGCCAGCAATAGTCAATAGGGATGGAACTTGGGAAGTATCC
 
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rJMSF043O11+          CTCGTATGCGGTATGCCGAACATGAATAACCAATGTAAGACGAAGACCTATCCTATGTAC
rJMFF046F12+          CTCGTATGCGGTATGCCGAACATGAATAACCAATGTAAGACGAAGACCTATCCTATGTAC
rJMFF043C24+          CTCGTATGCGGTATGCCGAACATGAATAACCAATGTAAGACGAAGACCTATCCTATGTAC
                      ____________________________________________________________
consensus             CTCGTATGCGGTATGCCGAACATGAATAACCAATGTAAGACGAAGACCTATCCTATGTAC
 
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rJMSF043O11+          TATTTCAAATTT                                                
rJMFF046F12+          TATTTCAAATTTAGACAGTCTTTTGATTTATGAATAAAGTTCAAATTAATGAAAGAGCAA
rJMFF043C24+          TATTTCAAATTTAGACAGTCTTTTGATTTATGAATAAAGTTCAAATTAATGAAAGAGCAA
                      ____________________________________________________________
consensus             TATTTCAAATTTAGACAGTCTTTTGATTTATGAATAAAGTTCAAATTAATGAAAGAGCAA
 
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rJMFF046F12+          ACAATCATACTCTTTCAT                                          
rJMFF043C24+          ACAATCATACTCTTTCATACAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus             ACAATCATACTCTTTCATACAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG