clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF038J17 | Sequence | 530 | 004611 (4) | ref|XP_010260115.1| | 3e-15 | PREDICTED: BTB/POZ domain-containing protein At5g60050 [Nelumbo nucifera] | 775 | 008290 (5) | ref|XP_010092990.1| | 4e-102 | hypothetical protein L484_007171 [Morus notabilis] gb|EXB53228.1| hypothetical p |
JMFN006L05 | Sequence | 532 | 008290 (5) | ref|XP_002281741.1| | 3e-65 | PREDICTED: BTB/POZ domain-containing protein At5g60050 [Vitis vinifera] ref|XP_ | |||||
JMSF021E11 | Sequence | 609 | 004611 (4) | ref|XP_006365150.1| | 6e-44 | PREDICTED: BTB/POZ domain-containing protein At5g60050-like [Solanum tuberosum] | 760 | 008290 (5) | ref|XP_002281741.1| | 5e-117 | PREDICTED: BTB/POZ domain-containing protein At5g60050 [Vitis vinifera] ref|XP_ |
JMSF023F15 | Sequence | 664 | 004611 (4) | ref|XP_006365150.1| | 5e-48 | PREDICTED: BTB/POZ domain-containing protein At5g60050-like [Solanum tuberosum] | 771 | 008290 (5) | ref|XP_002281741.1| | 8e-111 | PREDICTED: BTB/POZ domain-containing protein At5g60050 [Vitis vinifera] ref|XP_ |
JMSF028N21 | Sequence | 605 | 004611 (4) | ref|XP_006365150.1| | 1e-42 | PREDICTED: BTB/POZ domain-containing protein At5g60050-like [Solanum tuberosum] | 704 | 008290 (5) | ref|XP_010092990.1| | 3e-99 | hypothetical protein L484_007171 [Morus notabilis] gb|EXB53228.1| hypothetical p |
This contig is upended
. : . : . : . : . : . :
rJMSF021E11+ TTCTCGGTTGCTTAGAGAAGAC
____________________________________________________________
consensus TTCTCGGTTGCTTAGAGAAGAC
. : . : . : . : . : . :
rJMSF021E11+ GTCCCTGACAATACTATTTCGAGGGACATGCTCTATAATCTTTGTCACGGGTGTCTTAAT
rJMSF023F15+ GGACATGCTCTATAATCTTTGTCACGGGTGTCTTAAT
____________________________________________________________
consensus GTCCCTGACAATACTATTTCGAGGGACATGCTCTATAATCTTTGTCACGGGTGTCTTAAT
. : . : . : . : . : . :
rJMSF021E11+ TCGTTATTACTCTGTGCGTCCGAGGCAACGTGTGTGGATGAAAGCGGGAAGGATCGGGGA
rJMSF028N21+ CGAGGCAACGTGTGTGGATGAAAGCGGGAAGGATCGGGGA
rJMSF023F15+ TCGTTATTACTCTGTGCGTCCGAGGCAACGTGTGTGGATGAAAGCGGGAAGGATCGGGGA
rJMFF038J17+ ATTACTCTGTGCGTCCGAGGCAACGTGTGTGGATGAAAGCGGGAAGGATCGGGGA
____________________________________________________________
consensus TCGTTATTACTCTGTGCGTCCGAGGCAACGTGTGTGGATGAAAGCGGGAAGGATCGGGGA
. : . : . : . : . : . :
rJMSF021E11+ GTCGTGATGGGGGAGATAGCTCGCGAGGCGGATAACGTTCAGTGGATCGTTGATATCCTG
rJMSF028N21+ GTCGTGATGGGGGAGATAGCTCGCGAGGCGGATAACGTTCAGTGGATCGTTGATATCCTG
rJMSF023F15+ GTCGTGATGGGGGAGATAGCTCGCGAGGCGGATAACGTTCAGTGGATCGTTGATATCCTG
rJMFF038J17+ GTCGTGATGGGGGAGATAGCTCGCGAGGCGGATAACGTTCAGTGGATCGTTGATATCCTG
____________________________________________________________
consensus GTCGTGATGGGGGAGATAGCTCGCGAGGCGGATAACGTTCAGTGGATCGTTGATATCCTG
. : . : . : . : . : . :
rJMSF021E11+ ATTGAGAGGAAGATGGGGGACGAATTTGTGGACTTATGGGCGGACCAAAAGGAGCTTGCG
rJMSF028N21+ ATTGAGAGGAAGATGGGGGACGAATTTGTGGACTTATGGGCGGACCAAAAGGAGCTTGCG
rJMSF023F15+ ATTGAGAGGAAGATGGGGGACGAATTTGTGGACTTATGGGCGGACCAAAAGGAGCTTGCG
rJMFF038J17+ ATTGAGAGGAAGATGGGGGACGAATTTGTGGACTTATGGGCGGACCAAAAGGAGCTTGCG
____________________________________________________________
consensus ATTGAGAGGAAGATGGGGGACGAATTTGTGGACTTATGGGCGGACCAAAAGGAGCTTGCG
. : . : . : . : . : . :
rJMSF021E11+ AGTCTTCATTCCAAAATTCCCACCATGTATAGACACGAAATTAGCAGGATCACGGCACAG
rJMSF028N21+ AGTCTTCATTCCAAAATTCCCACCATGTATAGACACGAAATTAGCAGGATCACGGCACAG
rJMSF023F15+ AGTCTTCATTCCAAAATTCCCACCATGTATAGACACGAAATTAGCAGGATCACGGCACAG
JMFN006L05- ACAG
rJMFF038J17+ AGTCTTCATTCCAAAATTCCCACCATGTATAGACACGAAATTAGCAGGATCACGGCACAG
____________________________________________________________
consensus AGTCTTCATTCCAAAATTCCCACCATGTATAGACACGAAATTAGCAGGATCACGGCACAG
. : . : . : . : . : . :
rJMSF021E11+ CTCTGTGTGGCAATTGGTCGAGGGCATTTATTGGTGCCAAAAGACGCACGATTCTCTTTG
rJMSF028N21+ CTCTGTGTGGCAATTGGTCGAGGGCATTTATTGGTGCCAAAAGACGCACGATTCTCTTTG
rJMSF023F15+ CTCTGTGTGGCAATTGGTCGAGGGCATTTATTGGTGCCAAAAGACGCACGATTCTCTTTG
JMFN006L05- CTCTGTGTGGCAATTGGTCGAGGGCATTTATTGGTGCCAAAAGACGCACGATTCTCTTTG
rJMFF038J17+ CTCTGTGTGGCAATTGGTCGAGGGCATTTATTGGTGCCAAAAGACGCACGATTCTCTTTG
____________________________________________________________
consensus CTCTGTGTGGCAATTGGTCGAGGGCATTTATTGGTGCCAAAAGACGCACGATTCTCTTTG
. : . : . : . : . : . :
rJMSF021E11+ TTATCGACGTGGCTGGAAGCACTCTATGAGGACTTCGGGTGGATGAGGAGAGCGTGTAGA
rJMSF028N21+ TNATCGACGTGGCTGGAAGCACTCTATGAGGACTTCGGGTGGATGAGGAGAGCGTGTAGA
rJMSF023F15+ TTATCGACGTGGCTGGAAGCACTCTATGAGGACTTCGGGTGGATGAGGAGAGCGTGTAGA
JMFN006L05- TTATCGACGTGGCTGGAAGCACTCTATGAGGACTTCGGGTGGATGAGGAGAGCGTGTAGA
rJMFF038J17+ TTATCGACGTGGCTGGAAGCACTCTATGAGGACTTCGGGTGGATGAGGAGAGCGTGTAGA
____________________________________________________________
consensus TTATCGACGTGGCTGGAAGCACTCTATGAGGACTTCGGGTGGATGAGGAGAGCGTGTAGA
. : . : . : . : . : . :
rJMSF021E11+ TCGATCGATAAGACGCTAGTCGAGGATGGATTGAGCCAAACGATTCTTACCCTTCCGTTG
rJMSF028N21+ TCGATCGATAAGACGCTAGTCGAGGATGGATTGAGCCAAACGATTCTTACCCTTCCGTTG
rJMSF023F15+ TCGATCGATAAGACGCTAGTCGAGGATGGATTGAGCCAAACGATTCTTACCCTTCCGTTG
JMFN006L05- TCGATCGATAAGACGCTAGTCGAGGATGGATTGAGCCAAACGATTCTTACCCTTCCGTTG
rJMFF038J17+ TCGATCGATAAGACGCTAGTCGAGGATGGATTGAGCCAAACGATTCTTACCCTTCCGTTG
____________________________________________________________
consensus TCGATCGATAAGACGCTAGTCGAGGATGGATTGAGCCAAACGATTCTTACCCTTCCGTTG
. : . : . : . : . : . :
rJMSF021E11+ CCCCAACAACAAGCAATCATGCTTAATTGGTTCGACCGGTTTCTTAATAAGGGCGACGAT
rJMSF028N21+ CCCCAACAACAAGCAATCATGCTTAATTGGTTCGACCGGTTTCTTAATAAGGGCGACGAT
rJMSF023F15+ CCCCAACAACAAGCAATCATGCTTAATTGGTTCGACCGGTTTCTTAATAAGGGCGACGAT
JMFN006L05- TCCCAACAACAAGCAATCATGCTTAATTGGTTCGACCGGTTTCTTAATAAGGGCGACGAT
rJMFF038J17+ CCCCAACAACAAGCAATCATGCTTAATTGGTTCGACCGGTTTCTTAATAAGGGCGACGAT
____________________________________________________________
consensus CCCCAACAACAAGCAATCATGCTTAATTGGTTCGACCGGTTTCTTAATAAGGGCGACGAT
. : . : . : . : . : . :
rJMSF021E11+ TGCCCCAACATTCAGAAAGCATTTCAAGTCTGGTGGAGACGGGCTTTTATTAAGCAGTAT
rJMSF028N21+ TGCCCCAACATTCAGAAAGCATTTCAAGTCTGGTGGAGACGGGCTTTTATTAAGCAGTAT
rJMSF023F15+ TGCCCCAACATTCAGAAAGCATTTCAAGTCTGGTGGAGACGGGCTTTTATTAAGCAGTAT
JMFN006L05- TGCCCCAACATTCAGAAAGCATTTCAAGTCTGGTGGAGACGGGCTTTTATTAAGCAGTAT
rJMFF038J17+ TGCCCCAACATTCAGAAAGCATTTCAAGTCTGGTGGAGACGGGCTTTTATTAAGCAGTAT
____________________________________________________________
consensus TGCCCCAACATTCAGAAAGCATTTCAAGTCTGGTGGAGACGGGCTTTTATTAAGCAGTAT
. : . : . : . : . : . :
rJMSF021E11+ GTGCCCGAGTCTCAGCTACAGATAGCTCTTTGTGATTACACAAATTGATGGTACGTTCTA
rJMSF028N21+ GTGCCCGAGTCTCAGCTACAGATAGCTCTTTGTGATTACACAAATTGATGGTACGTTCTA
rJMSF023F15+ GTGCCCGAGTCTCAGCTACAGATAGCTCTTTGTGATTACACAAATTGATGGTACGTTCTA
JMFN006L05- GTGCCCGAGTCTCAGCTACAGATAGCTCTTTGTGATTACACAAATTGATGGTACGTTCTA
rJMFF038J17+ GTGCCCGAGTCTCAGCTACAGATAGCTCTTTGTGATTACACAAATTGATGGTACGTTCTA
____________________________________________________________
consensus GTGCCCGAGTCTCAGCTACAGATAGCTCTTTGTGATTACACAAATTGATGGTACGTTCTA
. : . : . : . : . : . :
rJMSF021E11+ TCGTCTTTTCGAATTAGACAAATGTACATATAAGATGATATTCTTTTTCTGTTTATCCGT
rJMSF028N21+ TCGTCTTTTCGAATTAGACAAATGTACATATAAGATGATATTCTTTTTCTGTTTATCCGT
rJMSF023F15+ TCGTCTTTTCGAATTAGACAAATGTACATATAAGATGATATTCTTTTTCTGTTTATCCGT
JMFN006L05- TCGTCTTTTCGAATTAGACAAATGTACATATAAGATGATATTCTTTTTCTGTTTATCCGT
rJMFF038J17+ TCGTCTTTTCGAATTAGACAAATGTACATATAAGATGATATTCTTTTTCTGTTTATCCGT
____________________________________________________________
consensus TCGTCTTTTCGAATTAGACAAATGTACATATAAGATGATATTCTTTTTCTGTTTATCCGT
. : . : . : . : . : . :
rJMSF021E11+ ACCATTATTTGTTTT
rJMSF028N21+ ACCATTATTTGTTTTTTCCACTGAAATTATTCATAAATTGTAAGAGAATGAATATATAAG
rJMSF023F15+ ACCATTATTTGTTTTTTCCACTGAAATTATTCATAAATTGTAAGAGAATGAATATATAAG
JMFN006L05- ACCATTATTTGTTTTTTCCACTGAAATTATTCATAAATTGTAAGAGAATGAATATATAAG
rJMFF038J17+ ACCATTATTTGTTTTTTCCACTGAAATTATTCATAAATTGTAAGAGAATGAATATATAAG
____________________________________________________________
consensus ACCATTATTTGTTTTTTCCACTGAAATTATTCATAAATTGTAAGAGAATGAATATATAAG
. : . : . : . : . : . :
rJMSF028N21+ TACT
rJMSF023F15+ TACTTTTGTGT
JMFN006L05- TACTTTTGTGTTGCCATTCAATCATGAAAAAGACAAATAAGTATCTTT
rJMFF038J17+ TACTTTTGTGTTGCCATTCAATCATGAAAAAGACAAATAAGTATCTTTATTACAGTACTA
____________________________________________________________
consensus TACTTTTGTGTTGCCATTCAATCATGAAAAAGACAAATAAGTATCTTTATTACAGTACTA