Contig 008285:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF037L13Sequence620008285 (2)ref|XP_004246494.1|6e-42PREDICTED: 50S ribosomal protein L12, chloroplastic [Solanum lycopersicum] ref|644008285 (2)ref|XP_008364609.1|4e-32PREDICTED: 50S ribosomal protein L12, chloroplastic-like [Malus domestica]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF037L13- GTAAAACTAAGAAGTACAGAGCCTGGACATAGAGTCGCAGACTGCAACA
                      ____________________________________________________________
consensus GTAAAACTAAGAAGTACAGAGCCTGGACATAGAGTCGCAGACTGCAACA
 
. : . : . : . : . : . :
JMFF037L13- GGCCCTTCGCCATGGGTGCAATCCACCATTATCATTTCTGAAATCTCAGCGGCTCAGCCT
                      ____________________________________________________________
consensus GGCCCTTCGCCATGGGTGCAATCCACCATTATCATTTCTGAAATCTCAGCGGCTCAGCCT
 
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JMFF037L13- CCGTCTACCAGCGTCACCGGCCGCCGACAGCCTCTCCTAGCGTCGCCAGCGACTACGTTG
                      ____________________________________________________________
consensus CCGTCTACCAGCGTCACCGGCCGCCGACAGCCTCTCCTAGCGTCGCCAGCGACTACGTTG
 
. : . : . : . : . : . :
JMFF037L13- CCTCACCTTCCCGTCCGCCGCCAACAACCAGCCTCGCCACGCCTGTCGCTGCCGTCCTTC
                      ____________________________________________________________
consensus CCTCACCTTCCCGTCCGCCGCCAACAACCAGCCTCGCCACGCCTGTCGCTGCCGTCCTTC
 
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JMFF037L13- CGACACTCCGGGAAGAAGCTTGATAAGAGCTGCAAAATCAAATAATTCCTTCCAAGTAAA
                      ____________________________________________________________
consensus CGACACTCCGGGAAGAAGCTTGATAAGAGCTGCAAAATCAAATAATTCCTTCCAAGTAAA
 
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JMFF037L13- TGAACTATCTCTTGTAATTCATTGTCTCCCTTAATCCACAAGCCATGAAGCTTCTTGCAA
                      ____________________________________________________________
consensus TGAACTATCTCTTGTAATTCATTGTCTCCCTTAATCCACAAGCCATGAAGCTTCTTGCAA
 
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JMFF037L13- CTTTTCGATCCTCCATGGCTCTTCGCGGAATAACAGGACCTTTGCAATCTCGCTCCTTCC
                      ____________________________________________________________
consensus CTTTTCGATCCTCCATGGCTCTTCGCGGAATAACAGGACCTTTGCAATCTCGCTCCTTCC
 
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JMFF037L13- AACCTGATTTTGTTCCAAGAGATCCAAATGCGGGGCCTAGAAGATACAAATACCCTGCTG
                      ____________________________________________________________
consensus AACCTGATTTTGTTCCAAGAGATCCAAATGCGGGGCCTAGAAGATACAAATACCCTGCTG
 
. : . : . : . : . : . :
JMFF037L13- TGTATGATCCATATGGCCCTAGACCCCCGCCTTCCGATAAGATCATTCAGCTTGTGGAAC
                      ____________________________________________________________
consensus TGTATGATCCATATGGCCCTAGACCCCCGCCTTCCGATAAGATCATTCAGCTTGTGGAAC
 
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JMFF037L13- GGATTGCTGGTCTCACACCTGAGGAGCGCAGACAAATTGGCCCTGTACTTAGAGAGAGAC
rJMFF037L13+ ACCTGAGGAGCGCAGACAAATTGGCCCTGTACTTAGAGAGAGAC
                      ____________________________________________________________
consensus GGATTGCTGGTCTCACACCTGAGGAGCGCAGACAAATTGGCCCTGTACTTAGAGAGAGAC
 
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JMFF037L13- TGAAGCATCCCATGCTGAAACCTATTTCGGT
rJMFF037L13+ TGAAGCATCCCATGCTGAAACCTATTTCGGTAGAAGGCATGGATTTTGGTGCTGCTGGAG
                      ____________________________________________________________
consensus TGAAGCATCCCATGCTGAAACCTATTTCGGTAGAAGGCATGGATTTTGGTGCTGCTGGAG
 
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rJMFF037L13+ CTGGAGCTGGAGCATCAAAGACCGAGGAGAAGAAGGCTGAAAAAACAGTCTTTGATGTTA
                      ____________________________________________________________
consensus CTGGAGCTGGAGCATCAAAGACCGAGGAGAAGAAGGCTGAAAAAACAGTCTTTGATGTTA
 
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rJMFF037L13+ AGCTAGAGAAATTCGATGCAGCTGCAAAAATCAAGGTGATCAAGGAGGTACGTGGTTTTA
                      ____________________________________________________________
consensus AGCTAGAGAAATTCGATGCAGCTGCAAAAATCAAGGTGATCAAGGAGGTACGTGGTTTTA
 
. : . : . : . : . : . :
rJMFF037L13+ CGAGTTTGGGATTGAAGGAAGCCAAGGATCTAGTAGAAAAGGTACCCGCAACTCTTAAGC
                      ____________________________________________________________
consensus CGAGTTTGGGATTGAAGGAAGCCAAGGATCTAGTAGAAAAGGTACCCGCAACTCTTAAGC
 
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rJMFF037L13+ AAGGGGTCACCAAAGAGGAGGCAAATGAGATAATCGAAAAGATCAAAGCTGCTGGAGGAA
                      ____________________________________________________________
consensus AAGGGGTCACCAAAGAGGAGGCAAATGAGATAATCGAAAAGATCAAAGCTGCTGGAGGAA
 
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rJMFF037L13+ TTGCAGTGATGGAGTGATAATCCCTGGGCGGGCGGGGATTATGTTCTTCCTAAGGATGAC
                      ____________________________________________________________
consensus TTGCAGTGATGGAGTGATAATCCCTGGGCGGGCGGGGATTATGTTCTTCCTAAGGATGAC
 
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rJMFF037L13+ GAAATGAACCTTCCTTTCTTGGATGATTGTTTTGCCAGAGGCATGAAGAAGAGCATTTAA
                      ____________________________________________________________
consensus GAAATGAACCTTCCTTTCTTGGATGATTGTTTTGCCAGAGGCATGAAGAAGAGCATTTAA
 
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rJMFF037L13+ ATTCAGCCATTGGAATTGTTATACTTTTGGAGATACTTTTTTCTCTTCCAAATAAACATG
                      ____________________________________________________________
consensus ATTCAGCCATTGGAATTGTTATACTTTTGGAGATACTTTTTTCTCTTCCAAATAAACATG
 
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rJMFF037L13+ GTTTCTAGATATTGGCTGGTCTGGCAAAGCCTATAGTCATGAATAGTGGATAATTTTATT
                      ____________________________________________________________
consensus GTTTCTAGATATTGGCTGGTCTGGCAAAGCCTATAGTCATGAATAGTGGATAATTTTATT
 
. : . : . : . : . : . :
rJMFF037L13+ ATCTACTCCAATTTATCCATTATCAGTTTGAAAAAAACTAAATGCATTGTTCAATCTGTT
                      ____________________________________________________________
consensus ATCTACTCCAATTTATCCATTATCAGTTTGAAAAAAACTAAATGCATTGTTCAATCTGTT