Contig 008280:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF036I22Sequence542023747ref|XP_007029139.1|1e-64RHOMBOID-like protein 15 [Theobroma cacao] gb|EOY09641.1| RHOMBOID-like protein 648008280 (3)gb|KDP21922.1|4e-29hypothetical protein JCGZ_03060 [Jatropha curcas]
JMSF028P09Sequence671008280 (3)ref|XP_008808595.1|6e-59PREDICTED: uncharacterized protein At3g58460 isoform X2 [Phoenix dactylifera]754024598gb|AIY60656.1|1e-53rhomboid protein Hedne_RBL15 [Hedera nepalensis]
JMSF050L13Sequence688020119ref|XP_007029139.1|5e-97RHOMBOID-like protein 15 [Theobroma cacao] gb|EOY09641.1| RHOMBOID-like protein 726008280 (3)gb|AIY60656.1|1e-46rhomboid protein Hedne_RBL15 [Hedera nepalensis]

Alignment

This contig is upended


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JMSF028P09-                                                           GCTACTCATCAC
                      ____________________________________________________________
consensus                                                             GCTACTCATCAC
 
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JMSF028P09-           AGCTCTCGGTATCAACAGACCAAATAACGAAACGAAGTGGAAATCTCGAGAAAACGTCGC
                      ____________________________________________________________
consensus             AGCTCTCGGTATCAACAGACCAAATAACGAAACGAAGTGGAAATCTCGAGAAAACGTCGC
 
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JMSF028P09-           AAGGAAATGAGGCCAAACATTGTCTCTGAGGCTTCGCTACAAACAAGGTTGGGCAGTTGG
                      ____________________________________________________________
consensus             AAGGAAATGAGGCCAAACATTGTCTCTGAGGCTTCGCTACAAACAAGGTTGGGCAGTTGG
 
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JMSF028P09-           TGGGAAGGCATTCCATTCTTTACATCTACTGTTATTATTGCTTGTGGGGTTGTTTACTTG
                      ____________________________________________________________
consensus             TGGGAAGGCATTCCATTCTTTACATCTACTGTTATTATTGCTTGTGGGGTTGTTTACTTG
 
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JMSF028P09-           GTTTGCCTTTTGGTCGGGTACGATTCATTTGCTGAAGTATGCTTCTTGCCATTAGAAGTA
                      ____________________________________________________________
consensus             GTTTGCCTTTTGGTCGGGTACGATTCATTTGCTGAAGTATGCTTCTTGCCATTAGAAGTA
 
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JMSF028P09-           ATTTCGCATTTTCAAGAACTAATGCATCAGTGTGCTATAGGCTTCTCTGGGGTTCTGTTC
                      ____________________________________________________________
consensus             ATTTCGCATTTTCAAGAACTAATGCATCAGTGTGCTATAGGCTTCTCTGGGGTTCTGTTC
 
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JMSF028P09-           TCAATGATTGTGATAGAGACAAGTCTAAGTGGTATTCAGAGTAGAAGTGTATTTGGACTT
                      ____________________________________________________________
consensus             TCAATGATTGTGATAGAGACAAGTCTAAGTGGTATTCAGAGTAGAAGTGTATTTGGACTT
 
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JMSF028P09-           TTTAATGTGCCTGCTAAATGGTATGGATTGATCTTGCTAGTGGTTTTCCAGCTTCTTATG
                      ____________________________________________________________
consensus             TTTAATGTGCCTGCTAAATGGTATGGATTGATCTTGCTAGTGGTTTTCCAGCTTCTTATG
 
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JMSF028P09-           CCAAACGTCTCATTACTTGGACACTTATCCGGTATTTTGTCCGGATTTCTATATACATAT
                      ____________________________________________________________
consensus             CCAAACGTCTCATTACTTGGACACTTATCCGGTATTTTGTCCGGATTTCTATATACATAT
 
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JMSF028P09-           GGTTTCTTCAACATTATAATACCAGACACATCTCGCTTTTCAGCAATTGAATCTTCATCA
rJMSF050L13+                                                             TCTTCATCA
                      ____________________________________________________________
consensus             GGTTTCTTCAACATTATAATACCAGACACATCTCGCTTTTCAGCAATTGAATCTTCATCA
 
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JMSF028P09-           TGGCTTTCAACTTGTGTGCGGAGACCAAAATTTATGATGTGCACTGGCAGTAATGTTTCA
rJMSF050L13+          TGGCTTTCAACTTGTGTGCGGAGACCAAAATTTATGATGTGCACTGGCAGTAATGTTTCA
                      ____________________________________________________________
consensus             TGGCTTTCAACTTGTGTGCGGAGACCAAAATTTATGATGTGCACTGGCAGTAATGTTTCA
 
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JMSF028P09-           GGTCACCTTCCAACATATTCAAGTCAAAATACAACTTCNAGTGGATTGCTTTCTGGAA  
rJMSF050L13+          GGTCACCTTCCAACATATTCAAGTCAAAATACAACTTCAAGTGGATTGCTTTCTGGAAAT
rJMFF036I22+                      ACATATTCAAGTCAAAATACAACTTCAAGTGGATTGCTTTCTGGAAAT
                      ____________________________________________________________
consensus             GGTCACCTTCCAACATATTCAAGTCAAAATACAACTTCAAGTGGATTGCTTTCTGGAAAT
 
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rJMSF050L13+          ATGTGGAGGAACTTTTCTTCACTGTTGCCACAGAGAGAAAATCCTCCTCAGTCCATGGAA
rJMFF036I22+          ATGTGGAGGAACTTTTCTTCACTGTTGCCACAGAGAGAAAATCCTCCTCAGTCCATGGAA
                      ____________________________________________________________
consensus             ATGTGGAGGAACTTTTCTTCACTGTTGCCACAGAGAGAAAATCCTCCTCAGTCCATGGAA
 
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rJMSF050L13+          GGTGATAGTAGATTCCCTGGAGCGGGAAGGACCCTTGGTTCTAACCCAAATCGAGGTTCT
rJMFF036I22+          GGTGATAGTAGATTCCCTGGAGCGGGAAGGACCCTTGGTTCTAACCCAAATCGAGGTTCT
                      ____________________________________________________________
consensus             GGTGATAGTAGATTCCCTGGAGCGGGAAGGACCCTTGGTTCTAACCCAAATCGAGGTTCT
 
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rJMSF050L13+          TCTATTGGAAATCCTGATTCAAATTTAATGGCTAGGCTGCTGGATGATAACGACAGCCAG
rJMFF036I22+          TCTATTGGAAATCCTGATTCAAATTTAATGGCTAGGCTGCTGGATGATAACGACAGCCAG
                      ____________________________________________________________
consensus             TCTATTGGAAATCCTGATTCAAATTTAATGGCTAGGCTGCTGGATGATAACGACAGCCAG
 
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rJMSF050L13+          AGGCATTTGTCGGGTCCATCAGTAGGTGGACAACAGAAACCAACTGGAAGACCAGCAGCA
rJMFF036I22+          AGGCATTTGTCGGGTCCATCAGTAGGTGGACAACAGAAACCAACTGGAAGACCAGCAGCA
                      ____________________________________________________________
consensus             AGGCATTTGTCGGGTCCATCAGTAGGTGGACAACAGAAACCAACTGGAAGACCAGCAGCA
 
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rJMSF050L13+          GCAGAGAATATTGTAGCTGTTGCAGCAACTACAAGAGAAAATCGTCACGAGACACAAGTT
rJMFF036I22+          GCAGAGAATATTGTAGCTGTTGCAGCAACTACAAGAGAAAATCGTCACGAGACACAAGTT
                      ____________________________________________________________
consensus             GCAGAGAATATTGTAGCTGTTGCAGCAACTACAAGAGAAAATCGTCACGAGACACAAGTT
 
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rJMSF050L13+          GAAGTTGCAGTGGCAGCTGCAGATGGAGATTTAAATGTTGCGGTGGAAATTCTTATGACC
rJMFF036I22+          GAAGTTGCAGTGGCAGCTGCAGATGGAGATTTAAATGTTGCGGTGGAAATTCTTATGACC
                      ____________________________________________________________
consensus             GAAGTTGCAGTGGCAGCTGCAGATGGAGATTTAAATGTTGCGGTGGAAATTCTTATGACC
 
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rJMSF050L13+          CAAAAGGAATAATTTGGAGACAATCAAATCAGGTAGGTCATCAAGTGAAAGCAAGGCTCT
rJMFF036I22+          CAAAAGGAATAATTTGGAGACAATCAAATCAGGTAGGTCATCAAGTGAAAGCAAGGCTCT
                      ____________________________________________________________
consensus             CAAAAGGAATAATTTGGAGACAATCAAATCAGGTAGGTCATCAAGTGAAAGCAAGGCTCT
 
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rJMSF050L13+          GACCCGCCCCCCCTGCCGTGGGTGTATATGTATATATGCTTTTATTATATCAATCAATGT
rJMFF036I22+          GACCCGCCCCCCCTGCCGTGGGTGTATATGTATATATGCTTTTATTATATCAATCAATGT
                      ____________________________________________________________
consensus             GACCCGCCCCCCCTGCCGTGGGTGTATATGTATATATGCTTTTATTATATCAATCAATGT
 
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rJMSF050L13+          TGTAAGTACTTAGTAAACCAACCAAACCAACCCAGGCTAGGCTAGGCTAGGCTGAGGCAC
rJMFF036I22+          TGTAAGTACTTAGTAAACCAACCAAACCAACCCAGGCTAGGCTAGGCTAGGCTGAGGCAC
                      ____________________________________________________________
consensus             TGTAAGTACTTAGTAAACCAACCAAACCAACCCAGGCTAGGCTAGGCTAGGCTGAGGCAC
 
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rJMSF050L13+          ATTTTTAGGTTGGAATGGAATGTATCACCAAAGCAAACCAAACACACTTTG         
rJMFF036I22+          ATTTTTAGGTTGGAATGGAATGTATCACCAAAGCAAACCAAACACACTTTGGAGCAGCTG
                      ____________________________________________________________
consensus             ATTTTTAGGTTGGAATGGAATGTATCACCAAAGCAAACCAAACACACTTTGGAGCAGCTG