Contig 008271:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF034O19Sequence538009058 (5)ref|XP_004243929.1|4e-26PREDICTED: pentatricopeptide repeat-containing protein At1g71210 [Solanum lycop695008271 (3)ref|XP_009591912.1|2e-41PREDICTED: pentatricopeptide repeat-containing protein At1g71210 [Nicotiana tom
JMSF045J19Sequence696009058 (5)ref|XP_004243929.1|7e-56PREDICTED: pentatricopeptide repeat-containing protein At1g71210 [Solanum lycop730008271 (3)ref|XP_006342394.1|7e-47PREDICTED: pentatricopeptide repeat-containing protein At1g71210-like isoform X
JMSF046J19Sequence220009058 (5)663008271 (3)ref|XP_009591912.1|1e-23PREDICTED: pentatricopeptide repeat-containing protein At1g71210 [Nicotiana tom

Alignment

This contig is upended


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rJMSF045J19+                                        AAAAAGCTTTATGACCTTTTGGTTGAACTC
                      ____________________________________________________________
consensus                                           AAAAAGCTTTATGACCTTTTGGTTGAACTC
 
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rJMSF046J19+                                                                    TT
rJMSF045J19+          AAGAAATGATGAAAATACAACAATTAAGAGCTTGAAATTAGGCAAGCTGATGGAGACATT
rJMFF034O19+                                 TTAAGAGCTTGAAATTAGNCAAGCTGATGGAGACATT
                      ____________________________________________________________
consensus             AAGAAATGATGAAAATACAACAATTAAGAGCTTGAAATTAGGCAAGCTGATGGAGACATT
 
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rJMSF046J19+          TTCTGGTNGTAGTAACACGAGCANGGATANTAATGAAATTGAAGAACTAANTCAGCAANG
rJMSF045J19+          TTCTGGTTGTAGTAACACGAGCATGGATATTAATGAAATTGAAGAACTAATTCAGCAATG
rJMFF034O19+          TTCTGGTTGTAGTAACACGAGCATGGATATTAATGAAATTGAAGANCTAATTCAGCAATG
                      ____________________________________________________________
consensus             TTCTGGTTGTAGTAACACGAGCATGGATATTAATGAAATTGAAGAACTAATTCAGCAATG
 
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rJMSF046J19+          CTGTCCTCTTGATATCTACACCTACAATCTGTTTGTTGAGAAGATTAAGTANGTGTGAGG
rJMSF045J19+          CTTTCCTCTTGATATCTACACCTACAATCTG-TTGTTGAGAAGATTAAGTATGTGTGAGG
rJMFF034O19+          CTTTCCTCTTGATATCTACACCTACAATCTG-TTGTTGAGAAGATTAAGTATGTGTGAGG
                      ____________________________________________________________
consensus             CTTTCCTCTTGATATCTACACCTACAATCTG-TTGTTGAGAAGATTAAGTATGTGTGAGG
 
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rJMSF046J19+          TTGATTATGCTTGGTGGTTACTTTAATACTTTACGTAAAAAAGGATATGAGCCAAATAGG
rJMSF045J19+          TTGATTATGCTT-GTGGTTACTTTAATACTTTACGTAAAAAAGGATATGAGCCAAATAGG
rJMFF034O19+          TTGATTATGCTT-GTGGTTACTTTAATACTTTACGTAAAAAAGGATATGAGCCAAATAGG
                      ____________________________________________________________
consensus             TTGATTATGCTT-GTGGTTACTTTAATACTTTACGTAAAAAAGGATATGAGCCAAATAGG
 
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rJMSF046J19+          TGGAGTTATGATATAATAGTACATGGTTTGTCAAAATGTGGTCGNACTTCCGAAGCTAGG
rJMSF045J19+          TGGAGTTATGATATAATAGTACATGGTTTGTCAAAATGTGGTCGGACTTCCGAAGCTAGG
rJMFF034O19+          TGGAGTTATGATATAATAGTACATGGTTTGTCAAAATGTGGTCGGACTTCCGAAGCTAGG
                      ____________________________________________________________
consensus             TGGAGTTATGATATAATAGTACATGGTTTGTCAAAATGTGGTCGGACTTCCGAAGCTAGG
 
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rJMSF046J19+          AAGTGGATTGCAGAAATGCTTGGCAAAGGATATGATCTAACAGAGGCAACTGAAGCCATG
rJMSF045J19+          AAGTGGATTGCAGAAATGCTTGGCAAAGGATATGATCTAACAGAGGCAACTGAAGCCATG
rJMFF034O19+          AAGTGGATTGCAGAAATGCTTGGCAAAGGATATGATCTAACAGAGGCAACTGAAGCCATG
                      ____________________________________________________________
consensus             AAGTGGATTGCAGAAATGCTTGGCAAAGGATATGATCTAACAGAGGCAACTGAAGCCATG
 
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rJMSF046J19+          GTCTAATATATTCAGAAGTTTCCTTTTTCTGTTCAAGAGACTTCTAATGATATTGCTCCT
rJMSF045J19+          GTCTAATATATTCAGAAGTTTCCTTTTTCTGTTCAAGAGACTTCTAATGATATTGCTCCT
rJMFF034O19+          GTCTAATATATTCAGAAGTTTCCTTTTTCTGTTCAAGAGACTTCTAATGATATTGCTCCT
                      ____________________________________________________________
consensus             GTCTAATATATTCAGAAGTTTCCTTTTTCTGTTCAAGAGACTTCTAATGATATTGCTCCT
 
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rJMSF046J19+          CCTAGCACTGCTTGTAGCNTGGTGAAGTTGATNCAAGAAAGCAGTTGGCAAAGCCGTGCT
rJMSF045J19+          CCTAGCACTGCTTGTAGCTTGGTGAAGTTGATACAAGAAAGCAGTTGGCAAAGCCGTGCT
rJMFF034O19+          CCTAGCACTGCTTGTAGCTTGGTGAAGTTGATACAAGAAAGCAGTTGGCAAAGCCGTGCT
                      ____________________________________________________________
consensus             CCTAGCACTGCTTGTAGCTTGGTGAAGTTGATACAAGAAAGCAGTTGGCAAAGCCGTGCT
 
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rJMSF046J19+          AGTTTGGCAGAAGAAATCTGGTACAAGAAAAGAGCAATCCAATCGTCACGATTTGCATCT
rJMSF045J19+          AGTTTGGCAGAAGAAATCTGGTACAAGAAAAGAGCAATCCAATCGTCACGATTTGCATCT
rJMFF034O19+          AGTTTGGCAGAAGAAATCTGGTACAAGAAAAGAGCAATCCAATCGTCACGATTTGCATCT
                      ____________________________________________________________
consensus             AGTTTGGCAGAAGAAATCTGGTACAAGAAAAGAGCAATCCAATCGTCACGATTTGCATCT
 
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rJMSF046J19+          GCTTGGACTGACTTGGCTACAACAGCGAAATTTCTTCATGGTTGTGTTTGTAAAGTCTGT
rJMSF045J19+          GCTTGGACTGACTTGGCTACAACAGCGAAATTTCTTCATGGTTGTGTTTGTAAAGTCTGT
rJMFF034O19+          GCTTGGACTGACTTGGCTACAACAGCGAAATTTCTTCATGGTTGTGTTTGTAAAGTCTGT
                      ____________________________________________________________
consensus             GCTTGGACTGACTTGGCTACAACAGCGAAATTTCTTCATGGTTGTGTTTGTAAAGTCTGT
 
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rJMSF046J19+          AAAGTTTATAGATTGAGATACAGGTGATGCAGACTCGCCCACAACAGCTCTCTGGCATCG
rJMSF045J19+          AAAGTTTATAGATTGAGATACAGGTGATGCAGACTCGCCCACAACAGCTCTCTGGCATTG
rJMFF034O19+          AAAGTTTATAGATTGAGATACAGGTGATGCAGACTCGCCCACAACAGCTCTCTGGCATTG
                      ____________________________________________________________
consensus             AAAGTTTATAGATTGAGATACAGGTGATGCAGACTCGCCCACAACAGCTCTCTGGCATTG
 
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rJMSF046J19+          CAATAAAGAGCCCTTCAAAGTGGCTGAAAAGTTTTTGAAG                    
rJMSF045J19+          CAATAAAGAGCCCTTCAAAGTGGCTGAAAAGTTTTTGAAG                    
rJMFF034O19+          CAATAAAGAGCCCTTCAAAGTGGCTGAAAAGTTTTTGAAGGTTAACTTTGCTCCTGTGGT
                      ____________________________________________________________
consensus             CAATAAAGAGCCCTTCAAAGTGGCTGAAAAGTTTTTGAAGGTTAACTTTGCTCCTGTGGT