Contig 008245:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF027P13Sequence564004931 (5)ref|XP_009615987.1|6e-84PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochon759008245 (4)ref|XP_008380252.1|3e-70PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochon
JMSF003F18Sequence407004931 (5)ref|XP_009615987.1|6e-46PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochon794008245 (4)gb|KHN18127.1|3e-102Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Gly
JMSF003M01Sequence355004931 (5)ref|XP_009615987.1|4e-19PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochon761008245 (4)ref|XP_011098065.1|1e-85PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochon
JMSF029F15Sequence721004931 (5)ref|XP_009615987.1|9e-106PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochon727008245 (4)ref|XP_011098065.1|2e-86PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochon

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003F18+                                                              TTCAAATT
                      ____________________________________________________________
consensus                                                                 TTCAAATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003M01+                                                 TTGCAGATGAGCTTAATTCCC
rJMSF003F18+          TATCACGTTATGATTCTATCAGGTATGGGAATCAAGTTGTTGCAGATGAGCTTAATTCCC
                      ____________________________________________________________
consensus             TATCACGTTATGATTCTATCAGGTATGGGAATCAAGTTGTTGCAGATGAGCTTAATTCCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003M01+          TTTATGGGGGATCCCCGTGCTAAAGGCTTTGGTTCTGAGGTCAAAATGAGAATTCTAATG
rJMSF003F18+          TTTATGGGGGAT-CCCGTGCTAAAGGCTTTGGTTCTGAGGTCAAAATGAGAATTCTAATG
rJMSF029F15+                       CCCGTGCTAAAGGCTTTGGTTCTGAGGTCAAAATGAGAATTCTAATG
                      ____________________________________________________________
consensus             TTTATGGGGGATCCCCGTGCTAAAGGCTTTGGTTCTGAGGTCAAAATGAGAATTCTAATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003M01+          GGAACATATGCCCTGTCAGCTGGTTATTATGATGCATACTACAAACGAGCTCAGCAGGTG
rJMSF003F18+          GGAACATATGCCCTGTCAGCTGGTTATTATGATGCATACTACAAACGAGCTCAGCAGGTG
rJMSF029F15+          GGAACATATGCCCTGTCAGCTGGTTATTATGATGCATACTACAAACGAGCTCAGCAGGTG
rJMFF027P13+                               GGTTATTATGATGCATACTACAAACGAGCTCAGCAGGTG
                      ____________________________________________________________
consensus             GGAACATATGCCCTGTCAGCTGGTTATTATGATGCATACTACAAACGAGCTCAGCAGGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003M01+          AGGGCCTTGGTAAGGGAAAGCTTTAGGGAAGCACTGGAAAATAATGATATCCTGATTTCA
rJMSF003F18+          AGGGCCTTGGTAAGGGAAAGCTTTAGGGAAGCACTGGAAAATAATGATATCCTGATTTCA
rJMSF029F15+          AGGGCCTTGGTAAGGGAAAGCTTTAGGGAAGCACTGGAAAATAATGATATCCTGATTTCA
rJMFF027P13+          AGGGCCTTGGTAAGGGAAAGCTTTAGGGAAGCACTGGAAAATAATGATATCCTGATTTCA
                      ____________________________________________________________
consensus             AGGGCCTTGGTAAGGGAAAGCTTTAGGGAAGCACTGGAAAATAATGATATCCTGATTTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003M01+          CCAGCAGCGCCATCAGCAGCTTATAAAATTGGTGAGAAGAAGGATGATCCATTGGCAATG
rJMSF003F18+          CCAGCAGCGCCATCAGCAGCTTATAAAATTGGTGAGAAGAAGGATGATCCATTGGCAATG
rJMSF029F15+          CCAGCAGCGCCATCAGCAGCTTATAAAATTGGTGAGAAGAAGGATGATCCATTGGCAATG
rJMFF027P13+          CCAGCAGCGCCATCAGCAGCTTATAAAATTGGTGAGAAGAAGGATGATCCATTGGCAATG
                      ____________________________________________________________
consensus             CCAGCAGCGCCATCAGCAGCTTATAAAATTGGTGAGAAGAAGGATGATCCATTGGCAATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003M01+          TATGCAGGTGATATCATGACGGTGAATGTTAACCTGGCTGGTCTTCCTGCACTGGTTCTG
rJMSF003F18+          TATGCAGGTGATATCATGACGGTGAATGTTAACCTGGCTGGTCTTCCTGCACTGGTTCTG
rJMSF029F15+          TATGCAGGTGATATCATGACGGTGAATGTTAACCTGGCTGGTCTTCCTGCACTGGTTCTG
rJMFF027P13+          TATGCAGGTGATATCATGACGGTGAATGTTAACCTGGCTGGTCTTCCTGCACTGGTTCTG
                      ____________________________________________________________
consensus             TATGCAGGTGATATCATGACGGTGAATGTTAACCTGGCTGGTCTTCCTGCACTGGTTCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003M01+          CCCTGTGGATTTGTTGACGGTGGTTCTGTATGGCTACCTGTTGGCGTTCAAATGATTGGC
rJMSF003F18+          CCCTGTGGATTTGTTGACGGTGGTTCTGTAGGGCTACCTGTTGGCGTTCAAATGATTGGC
rJMSF029F15+          CCCTGTGGATTTGTTGACGGTGGTTCTGTAGGGCTACCTGTTGGCGTTCAAATGATTGGC
rJMFF027P13+          CCCTGTGGATTTGTTGACGGTGGTTCTGTAGGGCTACCTGTTGGCGTTCAAATGATTGGC
                      ____________________________________________________________
consensus             CCCTGTGGATTTGTTGACGGTGGTTCTGTAGGGCTACCTGTTGGCGTTCAAATGATTGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003M01+          GCTGCATTTGACGAGGGAAAACTTCTTAGAATGGGTCACATCTTCGAGCAAACACTTCAG
rJMSF003F18+          GCTGCATTTGACGAGGGAAAACTTCTTAGAATGGGTCACATCTTCGAGCAAACACTTCAG
rJMSF029F15+          GCTGCATTTGACGAGGGAAAACTTCTTAGAATGGGTCACATCTTCGAGCAAACACTTCAG
rJMFF027P13+          GCTGCATTTGACGAGGGAAAACTTCTTAGAATGGGTCACATCTTCGAGCAAACACTTCAG
                      ____________________________________________________________
consensus             GCTGCATTTGACGAGGGAAAACTTCTTAGAATGGGTCACATCTTCGAGCAAACACTTCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003M01+          GGCTGCAGTTTTATTCCTCCCCTCGTGGCAGATGAATTTTCAAGCTAGTCACTAATTTTT
rJMSF003F18+          GGCTGCAGTTTTATTCCTCCCCTCGTGGCAGATGAATTTTCAAGCTAGTCACTAATTTTT
rJMSF029F15+          GGCTGCAGTTTTATTCCTCCCCTCGTGGCAGATGAATTTTCAAGCTAGTCACTAATTTTT
rJMFF027P13+          GGCTGCAGTTTTATTCCTCCCCTCGTGGCAGATGAATTTTCAAGCTAGTCACTAATTTTT
                      ____________________________________________________________
consensus             GGCTGCAGTTTTATTCCTCCCCTCGTGGCAGATGAATTTTCAAGCTAGTCACTAATTTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003M01+          GCAGCTAACAACCATAATTATCCTAATGGAGATGAGGGAGAAATCTCCACCTGGGAAGCT
rJMSF003F18+          GCAGCTAACAACCATAATTATCCTAATGGAGATGAGGGAGAAATCTCCACCTGGGAAGCT
rJMSF029F15+          GCAGCTAACAACCATAATTATCCTAATGGAGATGAGGGAGAAATCTCCACCTGGGAAGCT
rJMFF027P13+          GCAGCTAACAACCATAATTATCCTAATGGAGATGAGGGAGAAATCTCCACCTGGGAAGCT
                      ____________________________________________________________
consensus             GCAGCTAACAACCATAATTATCCTAATGGAGATGAGGGAGAAATCTCCACCTGGGAAGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003M01+          TTGTGCAGCAATGGCTTCAAGCTCTACCTTTTATAACACTATCATCTATCAAAGGGACAA
rJMSF003F18+          TTGTGCAGCAATGGCTTCAAGCTCTACCTTTTATAACACTATCATCTATCAAAGGGACAA
rJMSF029F15+          TTGTGCAGCAATGGCTTCAAGCTCTACCTTTTATAACACTATCATCTATCAAAGGGACAA
rJMFF027P13+          TTGTGCAGCAATGGCTTCAAGCTCTACCTTTTATAACACTATCATCTATCAAAGGGACAA
                      ____________________________________________________________
consensus             TTGTGCAGCAATGGCTTCAAGCTCTACCTTTTATAACACTATCATCTATCAAAGGGACAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003M01+          TGGCATCTGCGCGATACTAAACTGGATGGAACTAAGAATGGTAATGCGCCTGGTTTTATG
rJMSF003F18+          TGGCATCTGCGCGATACTAAACTGGATGGAACTAAGAATGGTAATGCGCCTGGTTTTATG
rJMSF029F15+          TGGCATCTGCGCGATACTAAACTGGATGGAACTAAGAATGGTAATGCGCCTGGTTTTATG
rJMFF027P13+          TGGCATCTGCGCGATACTAAACTGGATGGAACTAAGAATGGTAATGCGCCTGGTTTTATG
                      ____________________________________________________________
consensus             TGGCATCTGCGCGATACTAAACTGGATGGAACTAAGAATGGTAATGCGCCTGGTTTTATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003M01+          TATCTTCACATAGCTACATAAGTCTTGTGAATGTCCTTTCAAAGTGAGCATATTTGATTC
rJMSF003F18+          TATCTTCACATAGCTACATAAGTCTTGTGAATGTCCTTTCAAAGTGAGCATATTTGATTC
rJMSF029F15+          TATCTTCACATAGCTACATAAGTCTTGTGAATGTCCTTTCAAAGTGAGCATATTTGATTC
rJMFF027P13+          TATCTTCACATAGCTACATAAGTCTTGTGAATGTCCTTTCAAAGTGAGCATATTTGATTC
                      ____________________________________________________________
consensus             TATCTTCACATAGCTACATAAGTCTTGTGAATGTCCTTTCAAAGTGAGCATATTTGATTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003M01+          GAATAT                                                      
rJMSF003F18+          GAATAT                                                      
rJMSF029F15+          GAATATTGTGATACAAA                                           
rJMFF027P13+          GAATATTGTGATACAAAATATTTAGCTTAAATTTAATGAACAACCATTCGAGAATGTGTA
                      ____________________________________________________________
consensus             GAATATTGTGATACAAAATATTTAGCTTAAATTTAATGAACAACCATTCGAGAATGTGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF027P13+          ATTTCACTAGATGGATGAGTTGGACTTATATTATATTTAAGTCAGGTTTTTAATACTTTA
                      ____________________________________________________________
consensus             ATTTCACTAGATGGATGAGTTGGACTTATATTATATTTAAGTCAGGTTTTTAATACTTTA