Contig 008237:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF015H12Sequence608012036 (3)ref|XP_007037817.1|1e-79Pectate lyase family protein isoform 3 [Theobroma cacao] gb|EOY22318.1| Pectate 637008237 (3)ref|XP_009788173.1|1e-50PREDICTED: probable pectate lyase 18 [Nicotiana sylvestris]
JMFF026F12Sequence507012036 (3)gb|EMT28700.1|5e-37hypothetical protein F775_17439 [Aegilops tauschii]752008237 (3)gb|AFK46866.1|2e-36unknown [Lotus japonicus]
JMSF026K02Sequence640012036 (3)ref|XP_007037817.1|1e-87Pectate lyase family protein isoform 3 [Theobroma cacao] gb|EOY22318.1| Pectate 740008237 (3)ref|XP_009762540.1|6e-84PREDICTED: probable pectate lyase 18 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF026K02+                                        TTCAAAGAATGCCCAGGTGTCGGCACGGGT
rJMFF015H12+                            GTGAAGGCCTTGTTCAAAGAATGCCCAGGTGTCGGCACGGGT
                      ____________________________________________________________
consensus                               GTGAAGGCCTTGTTCAAAGAATGCCCAGGTGTCGGCACGGGT
 
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rJMSF026K02+          ACTTCCATGTGGTAAACAATGACTACACCCATTGGGAAATGTATGCTATTGGAGGGAGTG
rJMFF015H12+          ACTTCCATGTGGTAAACAATGACTACACCCATTGGGAAATGTATGCTATTGGAGGGAGTG
rJMFF026F12+              CCATGTGGTAAACAATGACTACACCCATTGGGAAATGTATGCTATTGGAGGGAGTG
                      ____________________________________________________________
consensus             ACTTCCATGTGGTAAACAATGACTACACCCATTGGGAAATGTATGCTATTGGAGGGAGTG
 
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rJMSF026K02+          CTAACCCAACTATCAACAGTCAAGGCAACAGATTCCTTGCCCCTGATGCCAGGTTTAGCA
rJMFF015H12+          CTAACCCAACTATCAACAGTCAAGGCAACAGATTCCTTGCCCCTGATGCCAGGTTTAGCA
rJMFF026F12+          CTAACCCAACTATCAACAGTCAAGGCAACAGATTCCTTGCCCCTGATGCCAGGTTTAGCA
                      ____________________________________________________________
consensus             CTAACCCAACTATCAACAGTCAAGGCAACAGATTCCTTGCCCCTGATGCCAGGTTTAGCA
 
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rJMSF026K02+          AAGAGGTAACGAAGCATGAGGATGCACCGGAGAGCGAATGGAAGAATTGGAATTGGAGAA
rJMFF015H12+          AAGAGGTAACGAAGCATGAGGATGCACCGGAGAGCGAATGGAAGAATTGGAATTGGAGAA
rJMFF026F12+          AAGAGGTAACGAAGCATGAGGATGCACCGGAGAGCGAATGGAAGAATTGGAATTGGAGAA
                      ____________________________________________________________
consensus             AAGAGGTAACGAAGCATGAGGATGCACCGGAGAGCGAATGGAAGAATTGGAATTGGAGAA
 
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rJMSF026K02+          CAGAAGGCGACTTAATGTTGAACGGTGCGTTTTTCACGACATCGGGTGCAGGGGCCTCGT
rJMFF015H12+          CAGAAGGCGACTTAATGTTGAACGGTGCGTTTTTCACGACATCGGGTGCAGGGGCCTCGT
rJMFF026F12+          CAGAAGGCGACTTAATGTTGAACGGTGCGTTTTTCACGACATCGGGTGCAGGGGCCTCGT
                      ____________________________________________________________
consensus             CAGAAGGCGACTTAATGTTGAACGGTGCGTTTTTCACGACATCGGGTGCAGGGGCCTCGT
 
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rJMSF026K02+          CGAGTTATGCCAGGGCTTCGAGTTTGAGCGCGAGGCCTTCTTCGGTTGTTAGCTCCCTTA
rJMFF015H12+          CGAGTTATGCCAGGGCTTCGAGTTTGAGCGCGAGGCCTTCTTCGGTTGTTAGCTCCCTTA
rJMFF026F12+          CGAGTTATGCCAGGGCTTCGAGTTTGAGCGCGAGGCCTTCTTCGGTTGTTAGCTCCCTTA
                      ____________________________________________________________
consensus             CGAGTTATGCCAGGGCTTCGAGTTTGAGCGCGAGGCCTTCTTCGGTTGTTAGCTCCCTTA
 
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rJMSF026K02+          CTTCCGGGGCCGGTTCGCTTTCTTGCCGGAAGGGTTCTCGATGCTAACTATTTACAAATT
rJMFF015H12+          CTTCCGGGGCCGGTTCGCTTTCTTGCCGGAAGGGTTCTCGATGCTAACTATTTACAAATT
rJMFF026F12+          CTTCCGGGGCCGGTTCGCTTTCTTGCCGGAAGGGTTCTCGATGCTAACTATTTACAAATT
                      ____________________________________________________________
consensus             CTTCCGGGGCCGGTTCGCTTTCTTGCCGGAAGGGTTCTCGATGCTAACTATTTACAAATT
 
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rJMSF026K02+          ATGATATATACAACATCTTGTTAAAATTAAGTTATGCTAAATATGGGAAATGTTTTTAAA
rJMFF015H12+          ATGATATATACAACATCTTGTTAAAATTAAGTTATGCTAAATATGGGAAATGTTTTTAAA
rJMFF026F12+          ATGATATATACAACATCTTGTTAAAATTAAGTTATGCTAAATATGGGAAATGTTTTTAAA
                      ____________________________________________________________
consensus             ATGATATATACAACATCTTGTTAAAATTAAGTTATGCTAAATATGGGAAATGTTTTTAAA
 
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rJMSF026K02+          TTAGGAATATAATTCAAAAATTAAAGGGAGGGAAAGGAAATAATTAAAGAAGTGAAGTAG
rJMFF015H12+          TTAGGAATATAATTCAAAAATTAAAGGGAGGGAAAGGAAATAATTAAAGAAGTGAAGTAG
rJMFF026F12+          TTAGGAATATAATTCAAAAATTAAAGGGAGGGAAAGGAAATAATTAAAGAAGTGAAGTAG
                      ____________________________________________________________
consensus             TTAGGAATATAATTCAAAAATTAAAGGGAGGGAAAGGAAATAATTAAAGAAGTGAAGTAG
 
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rJMSF026K02+          TCTAGCTAGCTAGGGATTGACTACATGGATTTTTCATTCAATTCCCTCCAATTTTTCACT
rJMFF015H12+          TCTAGCTAGCTAGGGATTGACTACATGGATTTTTCATTCAATTCCCTCCAATTTTTCACT
rJMFF026F12+          TCTAGCTAGCTAGGGATTGACTACATGGATTTTTCATTCAATTCCCTCCAATTTTTCACT
                      ____________________________________________________________
consensus             TCTAGCTAGCTAGGGATTGACTACATGGATTTTTCATTCAATTCCCTCCAATTTTTCACT
 
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rJMSF026K02+          TTTGTTATTT                                                  
rJMFF015H12+          TTTGTTATTTTAATTTTGTTCTGTTATTTGACTTGATCTGGTTGGGAAGTACAAC     
rJMFF026F12+          TTTGTTATTTTAATTTTGTTCTGTTATTTGACTTGATCTGGTTGGGAAGTACAACCTCTG
                      ____________________________________________________________
consensus             TTTGTTATTTTAATTTTGTTCTGTTATTTGACTTGATCTGGTTGGGAAGTACAACCTCTG
 
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rJMFF026F12+          CACGCTGCTCAAGTGCTCTGGCTTTATTGTTAGCTGCATGCACAGTTTCAATTCTTATTG
                      ____________________________________________________________
consensus             CACGCTGCTCAAGTGCTCTGGCTTTATTGTTAGCTGCATGCACAGTTTCAATTCTTATTG
 
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rJMFF026F12+          GATTCTGAGAAAGCATGTCCAGAAGTGTTGAGATATATACATTTTGTTTTATCATCAATA
                      ____________________________________________________________
consensus             GATTCTGAGAAAGCATGTCCAGAAGTGTTGAGATATATACATTTTGTTTTATCATCAATA